Listening on http://127.0.0.1:40223 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-26 11:55:49.129545 | timeMax: 2024-03-26 11:55:49.130142 | timeDiff: 5184000.000597 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-26 10:55:49.13 | timeMax: 2024-03-26 10:55:49.13 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 26 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 442 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... autoQC01 module APEX wide nrow: 264099 autoQC01 module APEX long nrow: 1284 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 48 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-26 12:24:31.740995 | timeMax: 2024-03-26 12:24:31.741574 | timeDiff: 5184000.00057912 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-26 11:24:31.741 | timeMax: 2024-03-26 11:24:31.74157 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-26 11:24:31.741 | timeMax: 2024-03-26 11:24:31.742 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA p34628/Proteomics/EXPLORIS_1/analytic_20240321/20240321_C34628_050_autoQC03dia.raw nrow dataFiltered(): 180 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-03-19 12:48:47.943079 | timeMax: 2024-03-26 12:48:47.943125 | timeDiff: 604800.0000453 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-26 12:49:02.138117 | timeMax: 2024-03-26 12:49:02.1387 | timeDiff: 5184000.00058293 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-26 11:49:02.138 | timeMax: 2024-03-26 11:49:02.139 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1808 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-26 13:37:38.759722 | timeMax: 2024-03-26 13:37:38.760332 | timeDiff: 5184000.00060987 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-01-26 12:37:38.75972 | timeMax: 2024-03-26 12:37:38.76033 | timeDiff: 5184000.00060987 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-26 13:46:12.700573 | timeMax: 2024-03-26 13:46:12.701203 | timeDiff: 5184000.00063014 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-27 13:48:38.058873 | timeMax: 2024-03-27 13:48:38.060235 | timeDiff: 5184000.00136137 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-01-27 12:48:38.059 | timeMax: 2024-03-27 12:48:38.06 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values (`geom_point()`). Warning: Removed 5 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 1808 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 264209 autoQC01 module APEX long nrow: 1356 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 16 rows containing missing values (`geom_point()`). NA Execution halted