Listening on http://127.0.0.1:33875 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-04 07:40:48.263956 | timeMax: 2024-04-04 08:40:48.264536 | timeDiff: 5184000.00057983 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-04 06:40:48.264 | timeMax: 2024-04-04 06:40:48.265 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-04 07:49:30.873476 | timeMax: 2024-04-04 08:49:30.87406 | timeDiff: 5184000.00058484 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-04 06:49:30.873 | timeMax: 2024-04-04 06:49:30.874 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... NA p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_010_autoQC03dda.raw input timeRange: 7776000 | timeMin: 2024-01-16 06:49:46.724 | timeMax: 2024-04-04 06:49:30.874 | timeDiff: 6825584.1500001 nFacets: 4 nrow dataFiltered(): 1508 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240206_Dimethylation/20240311_41_autoQC03dda.raw NA vals$rawDiag: TRUE p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_010_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_010_autoQC03dda.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawDiag-autoQC03-plot 1: runApp reading index for 20240403_010_autoQC03dda.raw... reading took17.52seconds NA p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_010_autoQC03dda.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_010_autoQC03dda.raw Plotting chromatograms ... Read 22032 items plotClick: Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... nrow dataFiltered(): 1508 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-04 11:58:27.4323 | timeMax: 2024-04-04 12:58:27.432951 | timeDiff: 5184000.00065112 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-04 10:58:27.4323 | timeMax: 2024-04-04 10:58:27.43295 | timeDiff: 5184000.00064993 nrow dataFiltered(): 988 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 180 using 'ggh4x' package ... nFacets: 1 input timeRange: 7776000 | timeMin: 2024-02-04 10:58:27.432 | timeMax: 2024-04-04 10:58:27.433 | timeDiff: 5184000.00100017 nrow dataFiltered(): 988 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 180 using 'ggh4x' package ... nFacets: 1 p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_010_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-03-28 12:16:37.394579 | timeMax: 2024-04-04 13:16:37.394644 | timeDiff: 604800.00006485 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Execution halted Warning message: agg could not write to the given file