Listening on http://127.0.0.1:36007 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-11 07:25:15.906636 | timeMax: 2024-04-11 08:25:15.907903 | timeDiff: 5184000.00126719 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-11 06:25:15.907 | timeMax: 2024-04-11 06:25:15.908 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 672 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_008_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 247 using 'ggh4x' package ... p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_001_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-11 09:54:04.913252 | timeMax: 2024-04-11 10:54:04.915089 | timeDiff: 5184000.00183749 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-11 08:54:04.913 | timeMax: 2024-04-11 08:54:04.915 | timeDiff: 5184000.00199986 nFacets: 4 nrow dataFiltered(): 688 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 247 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-11 10:49:40.509362 | timeMax: 2024-04-11 11:49:40.510775 | timeDiff: 5184000.00141311 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-11 09:49:40.509 | timeMax: 2024-04-11 09:49:40.511 | timeDiff: 5184000.00199986 nFacets: 4 nrow dataFiltered(): 688 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_017_autoQC03dda.raw p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_001_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-11 10:54:56.475065 | timeMax: 2024-04-11 11:54:56.475972 | timeDiff: 5184000.00090742 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 688 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-11 09:54:56.475 | timeMax: 2024-04-11 09:54:56.476 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 688 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_016_autoQC01.raw NA p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_016_autoQC01.raw NA p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_008_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-11 13:49:21.955751 | timeMax: 2024-04-11 14:49:21.956515 | timeDiff: 5184000.00076437 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 558 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-11 12:49:21.95575 | timeMax: 2024-04-11 12:49:21.95652 | timeDiff: 5184000.00077009 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 558 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-11 12:49:21.956 | timeMax: 2024-04-11 12:49:21.957 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 558 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-11 13:50:00.246895 | timeMax: 2024-04-11 14:50:00.247679 | timeDiff: 5184000.00078487 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-11 12:50:00.247 | timeMax: 2024-04-11 12:50:00.248 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-11 13:55:04.623252 | timeMax: 2024-04-11 14:55:04.62382 | timeDiff: 5184000.00056839 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-12 07:22:09.32639 | timeMax: 2024-04-12 08:22:09.327502 | timeDiff: 5184000.00111246 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-12 06:22:09.326 | timeMax: 2024-04-12 06:22:09.328 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-12 07:44:10.376642 | timeMax: 2024-04-12 08:44:10.377764 | timeDiff: 5184000.00112104 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-12 06:44:10.377 | timeMax: 2024-04-12 06:44:10.378 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... p34775/Proteomics/EXPLORIS_1/roschi_20240411_PQ500_survey/20240411_018_autoQC03dda.raw p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_017_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_017_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_004_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-12 14:03:57.625852 | timeMax: 2024-04-12 15:03:57.627394 | timeDiff: 5184000.00154161 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 736 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-12 13:03:57.626 | timeMax: 2024-04-12 13:03:57.627 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-12 15:03:43.936728 | timeMax: 2024-04-12 16:03:43.938359 | timeDiff: 5184000.0016315 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-12 14:03:43.937 | timeMax: 2024-04-12 14:03:43.938 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). p34815/Proteomics/LUMOS_2/analytic_20240410/20240410_C34815_019_autoQC01.raw NA nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). p34548/Proteomics/LUMOS_2/analytic_20240328/20240328_C34548_020_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-13 19:17:29.43179 | timeMax: 2024-04-13 20:17:29.432365 | timeDiff: 5184000.00057459 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 800 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-13 18:17:29.432 | timeMax: 2024-04-13 18:17:29.432 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 800 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-04-07 14:06:13.229876 | timeMax: 2024-04-14 14:06:13.229917 | timeDiff: 604800.000040293 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-15 09:09:08.209489 | timeMax: 2024-04-15 10:09:08.210062 | timeDiff: 5184000.00057316 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-15 08:09:08.20949 | timeMax: 2024-04-15 08:09:08.21006 | timeDiff: 5184000.00057006 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-15 08:09:08.209 | timeMax: 2024-04-15 08:09:08.21 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-15 10:20:03.632424 | timeMax: 2024-04-15 11:20:03.633715 | timeDiff: 5184000.00129056 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-15 09:20:03.632 | timeMax: 2024-04-15 09:20:03.634 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). vals$rawrr: TRUE vals$rawDiag: TRUE NA p3189/Proteomics/EXPLORIS_1/kbende_20240412/20240412_019_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3189/Proteomics/EXPLORIS_1/kbende_20240412/20240412_019_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p3189/Proteomics/EXPLORIS_1/kbende_20240412/20240412_019_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240412_019_autoQC01.raw... reading took31.669seconds plotCycleLoad `geom_smooth()` using formula = 'y ~ x' plotLockMassCorrection plotMassDistribution plotMzDistribution plotPrecursorHeatmap plotTicBasepeak fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-16 07:49:57.059852 | timeMax: 2024-04-16 08:49:57.060649 | timeDiff: 5184000.00079656 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-16 08:13:01.154426 | timeMax: 2024-04-16 09:13:01.154997 | timeDiff: 5184000.00057101 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 832 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-16 07:13:01.154 | timeMax: 2024-04-16 07:13:01.155 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 832 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... NA p3189/Proteomics/EXPLORIS_1/kbende_20240412/20240412_020_autoQC03dda.raw NA NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-16 10:20:58.938665 | timeMax: 2024-04-16 11:20:58.939235 | timeDiff: 5184000.00057054 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-16 09:20:58.939 | timeMax: 2024-04-16 09:20:58.939 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-16 12:05:02.351227 | timeMax: 2024-04-16 13:05:02.351804 | timeDiff: 5184000.00057769 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-16 11:05:02.35123 | timeMax: 2024-04-16 11:05:02.3518 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-16 11:05:02.351 | timeMax: 2024-04-16 11:05:02.352 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... p34775/Proteomics/EXPLORIS_1/roschi_20240415_PQ500_SQmethod/20240415_018_autoQC03dda.raw NA p34775/Proteomics/EXPLORIS_1/roschi_20240415_PQ500_SQmethod/20240415_018_autoQC03dda.raw p3189/Proteomics/EXPLORIS_1/kbende_20240412/20240412_020_autoQC03dda.raw nrow dataFiltered(): 273 using 'ggh4x' package ... NA NA p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_004_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-16 12:47:07.950353 | timeMax: 2024-04-16 13:47:07.951367 | timeDiff: 5184000.00101447 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-16 11:47:07.95 | timeMax: 2024-04-16 11:47:07.951 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 377 using 'ggh4x' package ... p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240410_C34851_005_autoQC03dda.raw NA p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240409_C34851_009_autoQC03dda.raw p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240410_C34851_005_autoQC03dda.raw p34883/Proteomics/QEXACTIVE_1/analytic_20240412/20240412_C34883_001_autoQC01.raw p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240409_C34851_001_autoQC01.raw Execution halted Warning message: agg could not write to the given file