Listening on http://127.0.0.1:39795 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-17 10:34:38.912087 | timeMax: 2024-04-17 11:34:38.912677 | timeDiff: 5184000.00059009 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-17 09:34:38.912 | timeMax: 2024-04-17 09:34:38.913 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). plotClick: fn has changed to /srv/www/htdocs//p34775/Proteomics/EXPLORIS_1/roschi_20240415_PQ500_SQmethod/20240415_007_autoQC01.raw p34775/Proteomics/EXPLORIS_1/roschi_20240415_PQ500_SQmethod/20240415_007_autoQC01.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-17 10:35:35.318458 | timeMax: 2024-04-17 11:35:35.3196 | timeDiff: 5184000.00114226 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-17 09:35:35.318 | timeMax: 2024-04-17 09:35:35.32 | timeDiff: 5184000.00199986 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-17 10:42:50.286252 | timeMax: 2024-04-17 11:42:50.28766 | timeDiff: 5184000.00140738 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-17 09:42:50.286 | timeMax: 2024-04-17 09:42:50.288 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 800 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240417/20240417_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240417/20240417_001_autoQC01.raw NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240417/20240417_001_autoQC01.raw Plotting chromatograms ... Read 22032 items vals$rawDiag: TRUE plotClick: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240417/20240417_001_autoQC01.raw plotClick: NA plotChargeState reading index for 20240417_001_autoQC01.raw... reading took47.291seconds fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-17 12:03:15.458783 | timeMax: 2024-04-17 13:03:15.459568 | timeDiff: 5184000.00078464 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-17 11:03:15.459 | timeMax: 2024-04-17 11:03:15.46 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-17 14:29:30.907979 | timeMax: 2024-04-17 15:29:30.909084 | timeDiff: 5184000.00110555 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-17 13:29:30.908 | timeMax: 2024-04-17 13:29:30.909 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_001_autoQC01_X02.raw p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_009_autoQC01_X01.raw NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_009_autoQC01_X01.raw p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_001_autoQC01_X02.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw p34891/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34891_008_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-04-10 15:59:26.143525 | timeMax: 2024-04-17 15:59:26.143558 | timeDiff: 604800.000033379 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-17 21:09:38.218112 | timeMax: 2024-04-17 22:09:38.219016 | timeDiff: 5184000.00090384 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-17 20:09:38.218 | timeMax: 2024-04-17 20:09:38.219 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 800 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). vals$rawrr: TRUE vals$rawDiag: TRUE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240417/20240417_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240417/20240417_008_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240417/20240417_008_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240417_008_autoQC01.raw... reading took32.318seconds Plotting chromatograms ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-18 06:34:43.278719 | timeMax: 2024-04-18 07:34:43.279534 | timeDiff: 5184000.00081468 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 364 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-18 05:34:43.27872 | timeMax: 2024-04-18 05:34:43.27953 | timeDiff: 5184000.00081015 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-02-18 05:34:43.279 | timeMax: 2024-04-18 05:34:43.28 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 29 rows containing missing values (`geom_point()`). Warning: Removed 9 rows containing missing values (`geom_line()`). nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 58 rows containing missing values (`geom_point()`). Warning: Removed 9 rows containing missing values (`geom_line()`). p3000/Proteomics/EXPLORIS_1/antdit_20240219/20240219_004_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... NA NA p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_004_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-18 08:26:29.856112 | timeMax: 2024-04-18 09:26:29.857322 | timeDiff: 5184000.00120926 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-18 07:26:29.856 | timeMax: 2024-04-18 07:26:29.857 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw NA p34891/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34891_008_autoQC03dia.raw Execution halted Warning message: agg could not write to the given file