Listening on http://127.0.0.1:39421

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-02-22 14:34:27.944039 | timeMax: 2024-04-22 15:34:27.944624 | timeDiff: 5184000.00058579
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1344
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-02-22 13:34:27.944 | timeMax: 2024-04-22 13:34:27.945 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1344
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1280
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
NA
p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_02_autoQC01.raw
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 126
using 'ggh4x' package ...
nrow dataFiltered(): 780
using 'ggh4x' package ...
vals$rawrr: TRUE
p3000/Proteomics/LUMOS_1/pgehrig_20240417_HUNTER/20240417_027_autoQC03dda.raw


Execution halted