Listening on http://127.0.0.1:46211

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-02-22 15:47:43.010723 | timeMax: 2024-04-22 16:47:43.011313 | timeDiff: 5184000.00058985
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 338
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-02-22 14:47:43.01072 | timeMax: 2024-04-22 14:47:43.01131 | timeDiff: 5184000.00059009
nFacets: 1
nrow dataFiltered(): 338
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-02-22 14:47:43.011 | timeMax: 2024-04-22 14:47:43.011 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 338
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 0
NA
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1440
using 'ggh4x' package ...
Warning: Removed 31 rows containing missing values (`geom_point()`).
Warning: Removed 11 rows containing missing values (`geom_line()`).
NA
input timeRange: 7776000 | timeMin: 2024-01-29 14:47:44.866 | timeMax: 2024-04-22 14:47:43.011 | timeDiff: 7257598.14499998
nFacets: 1
nrow dataFiltered(): 546
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 0
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-02-22 15:54:33.821792 | timeMax: 2024-04-22 16:54:33.822451 | timeDiff: 5184000.00065875
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 486
using 'ggh4x' package ...
nrow dataFiltered(): 286
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-02-22 14:54:33.82179 | timeMax: 2024-04-22 14:54:33.82245 | timeDiff: 5184000.00065994
nFacets: 1
nrow dataFiltered(): 286
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 486
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-02-22 14:54:33.822 | timeMax: 2024-04-22 14:54:33.822 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 286
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 486
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 832
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 126
using 'ggh4x' package ...
NA
p34610/Proteomics/LUMOS_1/mwolleb_20240409/20240410_010autoQC03dia.raw
vals$rawrr: TRUE
NA
nrow dataFiltered(): 126
using 'ggh4x' package ...
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-02-23 07:52:34.750219 | timeMax: 2024-04-23 08:52:34.750783 | timeDiff: 5184000.0005641
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1280
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-02-23 06:52:34.75 | timeMax: 2024-04-23 06:52:34.751 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1280
using 'ggh4x' package ...
Warning: Removed 7 rows containing missing values (`geom_point()`).
NA
p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_001_autoQC01.raw
NA
p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_001_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_001_autoQC01.raw
NA
p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_001_autoQC01.raw
p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_001_autoQC01.raw
NA
nFacets: 2
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 162
using 'ggh4x' package ...
nrow dataFiltered(): 338
using 'ggh4x' package ...
p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_002_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_002_autoQC03dda.raw
p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_002_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_002_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_002_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/analytics_20240422/20240327_003_autoQC03dia.raw
NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-02-23 07:57:43.659436 | timeMax: 2024-04-23 08:57:43.660016 | timeDiff: 5184000.00057983
nFacets: 4
Warning: Error in if: argument is of length zero
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-02-23 08:54:01.856382 | timeMax: 2024-04-23 09:54:01.857177 | timeDiff: 5184000.00079465
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1376
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-02-23 07:54:01.856 | timeMax: 2024-04-23 07:54:01.857 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1376
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1280
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 832
using 'ggh4x' package ...
vals$rawrr: TRUE
nrow dataFiltered(): 832
using 'ggh4x' package ...
p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw
Plotting chromatograms ...
Read 22032 items
plotClick: 
fn has changed to /srv/www/htdocs//NA
Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
Read 22032 items
Warning: Error in hist.default: 'x' must be numeric
  171: stop
  170: hist.default
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-rawrr-autoQC03-plotTools
    1: runApp
NA
p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw
Plotting chromatograms ...
Read 22032 items
plotClick: 
p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw
plotClick: 
p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw
plotClick: 


Execution halted