Listening on http://127.0.0.1:42323 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-26 11:45:53.187895 | timeMax: 2024-04-26 12:45:53.188783 | timeDiff: 5184000.00088859 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-26 10:45:53.188 | timeMax: 2024-04-26 10:45:53.189 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-02 10:45:54.519 | timeMax: 2024-04-26 10:45:53.189 | timeDiff: 7257598.66999984 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-18 10:46:29.909 | timeMax: 2024-04-26 10:45:53.189 | timeDiff: 5875163.27999997 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw Plotting chromatograms ... Read 22032 items nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 936 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-26 13:53:28.114287 | timeMax: 2024-04-26 14:53:28.115121 | timeDiff: 5184000.00083375 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-26 12:53:28.114 | timeMax: 2024-04-26 12:53:28.115 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw NA p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw NA Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Plotting chromatograms ... p31573/Proteomics/LUMOS_1/yichichen_20240315/20240315_016_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p31573/Proteomics/LUMOS_1/yichichen_20240315/20240315_016_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p31573/Proteomics/LUMOS_1/yichichen_20240315/20240315_016_autoQC01.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... plotClick: plotClick: Plotting chromatograms ... NA Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Plotting chromatograms ... p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw plotClick: p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw plotClick: plotClick: Plotting chromatograms ... p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw NA p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 08:28:15.554148 | timeMax: 2024-04-29 09:28:15.555022 | timeDiff: 5184000.0008738 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-29 07:28:15.554 | timeMax: 2024-04-29 07:28:15.555 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//NA NA p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw plotClick: nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//NA NA plotClick: p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_03_autoQC03dda.raw NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_015_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 09:25:06.777713 | timeMax: 2024-04-29 10:25:06.778277 | timeDiff: 5184000.00056386 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 08:25:06.77771 | timeMax: 2024-04-29 08:25:06.77828 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 08:25:06.778 | timeMax: 2024-04-29 08:25:06.778 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 09:42:51.029029 | timeMax: 2024-04-29 10:42:51.029794 | timeDiff: 5184000.00076485 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-29 08:42:51.029 | timeMax: 2024-04-29 08:42:51.03 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_010_autoQC01.raw p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_010_autoQC01.raw NA p34686/Proteomics/EXPLORIS_2/analytic_20240426/20240426_C34686_001_autoQC01_20240427135515.raw p34686/Proteomics/EXPLORIS_2/analytic_20240426/20240426_C34686_001_autoQC01_20240427135515.raw plotClick: fn has changed to /srv/www/htdocs//p34686/Proteomics/EXPLORIS_2/analytic_20240426/20240426_C34686_001_autoQC01_20240427135515.raw vals$rawDiag: TRUE plotChargeState reading index for 20240426_C34686_001_autoQC01_20240427135515.raw... reading took19.376seconds p34686/Proteomics/EXPLORIS_2/analytic_20240426/20240426_C34686_001_autoQC01_20240427135515.raw NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p34686/Proteomics/EXPLORIS_2/analytic_20240426/20240426_C34686_001_autoQC01_20240427135515.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases vals$rawDiag: FALSE p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_010_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_010_autoQC01.raw Reading raw file: /srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_010_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases reading index for 20240428_C35011_010_autoQC01.raw... reading took16.622seconds NA p34858/Proteomics/EXPLORIS_2/analytic_20240410/20240410_C34858_001_autoQC01_20240411014057.raw NA nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 10:15:22.116872 | timeMax: 2024-04-29 11:15:22.117459 | timeDiff: 5184000.00058722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-29 09:15:22.117 | timeMax: 2024-04-29 09:15:22.117 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 11:52:02.538654 | timeMax: 2024-04-29 12:52:02.539382 | timeDiff: 5184000.00072742 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-29 10:52:02.539 | timeMax: 2024-04-29 10:52:02.539 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 624 using 'ggh4x' package ... NA nrow dataFiltered(): 162 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 13:05:43.827922 | timeMax: 2024-04-29 14:05:43.828487 | timeDiff: 5184000.00056458 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 12:05:43.82792 | timeMax: 2024-04-29 12:05:43.82849 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 12:05:43.828 | timeMax: 2024-04-29 12:05:43.828 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA nFacets: 2 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... nFacets: 2 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... p34705/Proteomics/LUMOS_2/analytic_20240425/20240425_C34705_009_autoQC03dda.raw p34963/Proteomics/LUMOS_2/analytic_20240425/20240425_C34963_0011_autoQC03dda.raw NA NA p34956/Proteomics/LUMOS_2/analytic_20240426/20240426_C34956_007_autoQC03dia.raw p34963/Proteomics/LUMOS_2/analytic_20240425/20240425_C34963_0010_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p34963/Proteomics/LUMOS_2/analytic_20240425/20240425_C34963_0010_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 NA nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 0 Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 0 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 13:51:13.824994 | timeMax: 2024-04-29 14:51:13.825738 | timeDiff: 5184000.0007441 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-29 12:51:13.825 | timeMax: 2024-04-29 12:51:13.826 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_014_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw Plotting chromatograms ... Read 22032 items NA vals$rawDiag: TRUE plotChargeState reading index for 20240427_005_autoQC01.raw... reading took13.938seconds plotTicBasepeak plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw NA plotClick: p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240426_001_autoQC01.raw... reading took12.612seconds reading index for 20240426_001_autoQC01.raw... reading took13.448seconds NA p34610/Proteomics/LUMOS_1/mwolleb_20240409/20240409_001_autoQC01.raw NA p34610/Proteomics/LUMOS_1/mwolleb_20240409/20240409_001_autoQC01.raw reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) plotPrecursorHeatmap plotScanTime plotTicBasepeak fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 15:03:05.334081 | timeMax: 2024-04-29 16:03:05.334842 | timeDiff: 5184000.00076151 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-29 14:03:05.334 | timeMax: 2024-04-29 14:03:05.335 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). NA p34956/Proteomics/LUMOS_2/analytic_20240426/20240426_C34956_006_autoQC01.raw p34956/Proteomics/LUMOS_2/analytic_20240426/20240426_C34956_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34956/Proteomics/LUMOS_2/analytic_20240426/20240426_C34956_006_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 15:08:54.382775 | timeMax: 2024-04-29 16:08:54.383699 | timeDiff: 5184000.0009234 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-02-29 14:08:54.38278 | timeMax: 2024-04-29 14:08:54.3837 | timeDiff: 5184000.00091982 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 15:15:08.603685 | timeMax: 2024-04-29 16:15:08.60426 | timeDiff: 5184000.00057459 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-02-29 14:15:08.604 | timeMax: 2024-04-29 14:15:08.604 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 06:27:59.824929 | timeMax: 2024-04-30 07:27:59.825624 | timeDiff: 5184000.00069523 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 49 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-01 05:27:59.825 | timeMax: 2024-04-30 05:27:59.826 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 49 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). p35019/Proteomics/QEXACTIVE_1/analytic_20240424/20240425_C35019_008_autoQC01.raw p35019/Proteomics/QEXACTIVE_1/analytic_20240424/20240425_C35019_008_autoQC01.raw p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw NA p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 312 using 'ggh4x' package ... p34926/Proteomics/QEXACTIVE_1/analytic_20240426/20240426_C34926_010_autoQC03dda.raw nrow dataFiltered(): 312 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 07:55:19.85581 | timeMax: 2024-04-30 08:55:19.856455 | timeDiff: 5184000.00064516 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 06:55:19.85581 | timeMax: 2024-04-30 06:55:19.85646 | timeDiff: 5184000.00064969 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 06:55:19.856 | timeMax: 2024-04-30 06:55:19.856 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p33994/Proteomics/EXPLORIS_1/analytic_20240429/20240429_C33994_001_autoQC03dda.raw p33994/Proteomics/EXPLORIS_1/analytic_20240429/20240429_C33994_005_autoQC03dda.raw nrow dataFiltered(): 338 using 'ggh4x' package ... p33994/Proteomics/EXPLORIS_1/analytic_20240429/20240429_C33994_001_autoQC03dda.raw nrow dataFiltered(): 338 using 'ggh4x' package ... NA p33994/Proteomics/EXPLORIS_1/analytic_20240426/20240426_C33994_005_autoQC03dda.raw p33994/Proteomics/EXPLORIS_1/analytic_20240429/20240429_C33994_001_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 08:13:54.919541 | timeMax: 2024-04-30 09:13:54.92011 | timeDiff: 5184000.00056863 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-01 07:13:54.92 | timeMax: 2024-04-30 07:13:54.92 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 5 nrow dataFiltered(): 1860 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1860 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 6 nrow dataFiltered(): 2232 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). nFacets: 7 nrow dataFiltered(): 2604 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 8 nrow dataFiltered(): 2976 using 'ggh4x' package ... Warning: Removed 25 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 9 nrow dataFiltered(): 3348 using 'ggh4x' package ... Warning: Removed 29 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 10 nrow dataFiltered(): 3720 using 'ggh4x' package ... Warning: Removed 31 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 11 nrow dataFiltered(): 4092 using 'ggh4x' package ... Warning: Removed 31 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_000_autoQC01.raw NA p35020/Proteomics/EXPLORIS_2/analytic_20240426/20240426_C35020_019_autoQC01_20240428012154.raw p35011/Proteomics/EXPLORIS_2/analytic_20240426/20240426_C35011_001_autoQC01.raw p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_001_autoQC01.raw p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_010_autoQC01.raw p35020/Proteomics/EXPLORIS_2/analytic_20240426/20240426_C35020_001r_autoQC01.raw p35016/Proteomics/EXPLORIS_2/analytic_20240425/20240425_C35016_014_autoQC01.raw NA vals$rawrr: TRUE p35016/Proteomics/EXPLORIS_2/analytic_20240425/20240425_C35016_005_autoQC01.raw p35016/Proteomics/EXPLORIS_2/analytic_20240425/20240425_C35016_014_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35016/Proteomics/EXPLORIS_2/analytic_20240425/20240425_C35016_014_autoQC01.raw Reading raw file: /srv/www/htdocs//p35016/Proteomics/EXPLORIS_2/analytic_20240425/20240425_C35016_014_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases NA p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_010_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_010_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_010_autoQC01.raw Reading raw file: /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_010_autoQC01.raw Plotting chromatograms ... Read 22032 items nFacets: 11 nrow dataFiltered(): 3080 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). Warning: Removed 12 rows containing missing values (`geom_line()`). nFacets: 11 nrow dataFiltered(): 3520 using 'ggh4x' package ... Warning: Removed 21 rows containing missing values (`geom_point()`). nFacets: 11 nrow dataFiltered(): 3080 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). Warning: Removed 12 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-01 07:13:54.92 | timeMax: 2024-04-11 07:13:55.6 | timeDiff: 3542400.67999983 nFacets: 11 nrow dataFiltered(): 1364 using 'ggh4x' package ... Warning: Removed 5 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-25 07:13:55.6 | timeMax: 2024-04-12 07:13:55.6 | timeDiff: 1555200 nFacets: 11 nrow dataFiltered(): 792 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_002_autoQC01.raw vals$rawDiag: TRUE plotChargeState reading index for 20240417_C34831_010_autoQC01.raw... reading took18.325seconds vals$rawrr: FALSE p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_002_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_002_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240408_002_autoQC01.raw... reading took30.618seconds NA p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_008_autoQC01.raw Reading raw file: /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_008_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240409_008_autoQC01.raw... reading took32.127seconds vals$rawrr: TRUE vals$rawDiag: FALSE p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_008_autoQC01.raw vals$rawrr: FALSE vals$rawDiag: TRUE plotCycleTime plotChargeState vals$rawrr: TRUE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: TRUE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawrr: TRUE vals$rawrr: TRUE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 11:04:14.839969 | timeMax: 2024-04-30 12:04:14.840647 | timeDiff: 5184000.00067854 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 10:04:14.83997 | timeMax: 2024-04-30 10:04:14.84065 | timeDiff: 5184000.00067997 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 10:04:14.84 | timeMax: 2024-04-30 10:04:14.841 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... NA p33994/Proteomics/EXPLORIS_1/analytic_20240429/20240429_C33994_005_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:19:40.77259 | timeMax: 2024-04-30 14:19:40.773443 | timeDiff: 5184000.00085306 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:19:40.77259 | timeMax: 2024-04-30 12:19:40.77344 | timeDiff: 5184000.00084972 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:19:40.773 | timeMax: 2024-04-30 12:19:40.773 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... NA p34886/Proteomics/QEXACTIVE_1/analytic_20240419/20240422_C34886_007_autoQC01.raw NA p34886/Proteomics/QEXACTIVE_1/analytic_20240419/20240422_C34886_007_autoQC01.raw p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw NA p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw NA autoQC01 module APEX wide nrow: 267168 autoQC01 module APEX long nrow: 1212 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 60 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_001_autoQC01.raw NA nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 98 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). p34617/Proteomics/QEXACTIVE_1/analytic_20240314/20240314_C34617_004_autoQC01.raw NA p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw NA p35019/Proteomics/QEXACTIVE_1/analytic_20240424/20240425_C35019_008_autoQC01.raw p35016/Proteomics/QEXACTIVE_1/analytic_20240425/20240425_C35016_002_autoQC01.raw p35019/Proteomics/QEXACTIVE_1/analytic_20240424/20240425_C35019_008_autoQC01.raw p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240409_C34851_001_autoQC01.raw NA p34842/Proteomics/QEXACTIVE_1/analytic_20240409/20240409_C34842_001_autoQC01.raw nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 147 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:58:39.364138 | timeMax: 2024-04-30 14:58:39.36471 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:58:39.36414 | timeMax: 2024-04-30 12:58:39.36471 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:58:39.364 | timeMax: 2024-04-30 12:58:39.365 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp p35019/Proteomics/QEXACTIVE_1/analytic_20240424/20240425_C35019_008_autoQC01.raw p35016/Proteomics/QEXACTIVE_1/analytic_20240425/20240425_C35016_002_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-03 06:28:17.851281 | timeMax: 2024-05-02 07:28:17.851985 | timeDiff: 5184000.00070405 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-03 05:28:17.851 | timeMax: 2024-05-02 05:28:17.852 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-04-25 07:29:56.607906 | timeMax: 2024-05-02 07:29:56.607939 | timeDiff: 604800.000032902 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-03 06:30:07.070134 | timeMax: 2024-05-02 07:30:07.070709 | timeDiff: 5184000.00057578 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-03 05:30:07.07 | timeMax: 2024-05-02 05:30:07.071 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 5 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 5 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240501/20240501_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240501/20240501_001_autoQC01.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240430/20240430_005_autoQC01.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240501/20240501_001_autoQC01.raw vals$rawrr: TRUE nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 5 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). Reading raw file: /srv/www/htdocs//p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240501/20240501_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA