Listening on http://127.0.0.1:41595 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-04 08:31:18.490656 | timeMax: 2024-05-03 09:31:18.49174 | timeDiff: 5184000.00108361 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 960 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-04 07:31:18.491 | timeMax: 2024-05-03 07:31:18.492 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-04 09:12:24.141145 | timeMax: 2024-05-03 10:12:24.141775 | timeDiff: 5184000.00063038 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-04 08:12:24.14114 | timeMax: 2024-05-03 08:12:24.14178 | timeDiff: 5184000.00064015 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-04 08:12:24.141 | timeMax: 2024-05-03 08:12:24.142 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-04 10:55:12.793726 | timeMax: 2024-05-03 11:55:12.794632 | timeDiff: 5184000.00090599 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). Warning: Removed 5 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-04 09:55:12.794 | timeMax: 2024-05-03 09:55:12.795 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). Warning: Removed 5 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-04 10:55:22.028191 | timeMax: 2024-05-03 11:55:22.029115 | timeDiff: 5184000.00092459 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 18 rows containing missing values (`geom_point()`). Warning: Removed 5 rows containing missing values (`geom_line()`). nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-04 09:55:22.028 | timeMax: 2024-05-03 09:55:22.029 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). Warning: Removed 5 rows containing missing values (`geom_line()`). nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 18 rows containing missing values (`geom_point()`). Warning: Removed 5 rows containing missing values (`geom_line()`). nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). Warning: Removed 5 rows containing missing values (`geom_line()`). nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). Warning: Removed 5 rows containing missing values (`geom_line()`). NA input timeRange: 7776000 | timeMin: 2024-03-28 09:55:14.441 | timeMax: 2024-05-03 09:55:12.795 | timeDiff: 3110398.35400009 nrow dataFiltered(): 880 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 880 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-04 15:13:04.185452 | timeMax: 2024-05-03 16:13:04.186247 | timeDiff: 5184000.00079513 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-04 14:13:04.185 | timeMax: 2024-05-03 14:13:04.186 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-05 21:01:31.053798 | timeMax: 2024-05-04 22:01:31.054367 | timeDiff: 5184000.00056815 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-05 20:01:31.054 | timeMax: 2024-05-04 20:01:31.054 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-06 10:30:32.257803 | timeMax: 2024-05-05 11:30:32.258437 | timeDiff: 5184000.00063419 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-06 09:30:32.258 | timeMax: 2024-05-05 09:30:32.258 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 624 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-06 18:26:54.70712 | timeMax: 2024-05-05 19:26:54.707801 | timeDiff: 5184000.00068116 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-06 17:26:54.707 | timeMax: 2024-05-05 17:26:54.708 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-07 07:43:53.810914 | timeMax: 2024-05-06 08:43:53.811591 | timeDiff: 5184000.00067735 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-07 06:43:53.811 | timeMax: 2024-05-06 06:43:53.812 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_002_autoQC01.raw NA p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_002_autoQC01.raw NA plotClick: p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_002_autoQC01.raw p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_002_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-07 07:44:38.350008 | timeMax: 2024-05-06 08:44:38.350644 | timeDiff: 5184000.00063562 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-07 06:44:38.35 | timeMax: 2024-05-06 06:44:38.351 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-07 08:19:21.373355 | timeMax: 2024-05-06 09:19:21.374083 | timeDiff: 5184000.00072718 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-07 07:19:21.373 | timeMax: 2024-05-06 07:19:21.374 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-07 08:19:33.148096 | timeMax: 2024-05-06 09:19:33.149033 | timeDiff: 5184000.00093746 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-07 07:19:33.148 | timeMax: 2024-05-06 07:19:33.149 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-07 13:04:43.040613 | timeMax: 2024-05-06 14:04:43.041294 | timeDiff: 5184000.00068069 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-07 12:04:43.041 | timeMax: 2024-05-06 12:04:43.041 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-07 13:42:04.049066 | timeMax: 2024-05-06 14:42:04.049652 | timeDiff: 5184000.00058627 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-07 12:42:04.04907 | timeMax: 2024-05-06 12:42:04.04965 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-07 12:42:04.049 | timeMax: 2024-05-06 12:42:04.05 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/antdit_20240503_turboTMTtest_newTune/20240503_017_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-07 13:42:14.388174 | timeMax: 2024-05-06 14:42:14.388754 | timeDiff: 5184000.00058031 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-07 12:42:14.38817 | timeMax: 2024-05-06 12:42:14.38875 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-07 12:42:14.388 | timeMax: 2024-05-06 12:42:14.389 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//NA p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_009_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-07 14:42:25.552449 | timeMax: 2024-05-06 15:42:25.553105 | timeDiff: 5184000.00065565 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-07 13:42:25.55245 | timeMax: 2024-05-06 13:42:25.5531 | timeDiff: 5184000.00065017 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-07 13:42:25.552 | timeMax: 2024-05-06 13:42:25.553 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 07:46:49.495192 | timeMax: 2024-05-07 08:46:49.496067 | timeDiff: 5184000.000875 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 06:46:49.49519 | timeMax: 2024-05-07 06:46:49.49607 | timeDiff: 5184000.00088024 autoQC01 module APEX wide nrow: 267718 autoQC01 module APEX long nrow: 1200 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 14 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-08 06:46:49.495 | timeMax: 2024-05-07 06:46:49.496 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p35100/Proteomics/LUMOS_1/analytic_20240506/20240506_C35100_001_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240429_2PCA/20240429_042_autoQC03dda.raw NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_015_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 07:53:11.244597 | timeMax: 2024-05-07 08:53:11.245174 | timeDiff: 5184000.00057673 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-08 06:53:11.2446 | timeMax: 2024-05-07 06:53:11.24517 | timeDiff: 5184000.00056982 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-08 06:53:11.245 | timeMax: 2024-05-07 06:53:11.245 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA nrow dataFiltered(): 180 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 10:34:11.438615 | timeMax: 2024-05-07 11:34:11.439502 | timeDiff: 5184000.00088763 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-08 09:34:11.439 | timeMax: 2024-05-07 09:34:11.44 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//p35121/Proteomics/FUSION_2/limingqin_20240503/20240503_007_autoQC03dda.raw p35121/Proteomics/FUSION_2/limingqin_20240503/20240503_007_autoQC03dda.raw plotClick: plotClick: NA plotClick: p35121/Proteomics/FUSION_2/limingqin_20240503/20240503_007_autoQC03dda.raw plotClick: p35121/Proteomics/FUSION_2/limingqin_20240503/20240503_007_autoQC03dda.raw p34973/Proteomics/FUSION_2/beffinger_20240424/20240424_012_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p34973/Proteomics/FUSION_2/beffinger_20240424/20240424_012_autoQC03dia.raw plotClick: plotClick: plotClick: plotClick: NA p35121/Proteomics/FUSION_2/limingqin_20240503/20240503_007_autoQC03dda.raw plotClick: plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 12:18:38.507465 | timeMax: 2024-05-07 13:18:38.508356 | timeDiff: 5184000.00089025 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-03-08 11:18:38.50747 | timeMax: 2024-05-07 11:18:38.50836 | timeDiff: 5184000.00089025 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 12:47:32.025869 | timeMax: 2024-05-07 13:47:32.026582 | timeDiff: 5184000.00071311 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-08 11:47:32.026 | timeMax: 2024-05-07 11:47:32.027 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... p35121/Proteomics/FUSION_2/limingqin_20240507/20240506_007_autoQC03dda.raw p35121/Proteomics/FUSION_2/limingqin_20240507/20240506_008_autoQC03dia.raw p35121/Proteomics/FUSION_2/limingqin_20240506/20240506_008_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//NA NA plotClick: plotClick: plotClick: p35121/Proteomics/FUSION_2/limingqin_20240506/20240506_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35121/Proteomics/FUSION_2/limingqin_20240506/20240506_007_autoQC03dda.raw plotClick: plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 15:50:04.454844 | timeMax: 2024-05-07 16:50:04.455525 | timeDiff: 5184000.00068164 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-08 14:50:04.455 | timeMax: 2024-05-07 14:50:04.456 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-09 06:26:01.212809 | timeMax: 2024-05-08 07:26:01.213605 | timeDiff: 5184000.0007956 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 63 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-09 05:26:01.213 | timeMax: 2024-05-08 05:26:01.214 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 63 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 338 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p35074/Proteomics/QEXACTIVE_1/analytic_20240502/20240502_C35074_006_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_005_autoQC01.raw NA p34701/Proteomics/QEXACTIVE_1/analytic_20240321/20240321_C34701_001_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//NA nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_005_autoQC01.raw NA nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-09 08:01:21.696217 | timeMax: 2024-05-08 09:01:21.696796 | timeDiff: 5184000.00057888 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 63 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-09 07:01:21.696 | timeMax: 2024-05-08 07:01:21.697 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 63 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 126 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-09 14:24:37.72811 | timeMax: 2024-05-08 15:24:37.728708 | timeDiff: 5184000.00059795 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-09 13:24:37.728 | timeMax: 2024-05-08 13:24:37.729 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 576 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... nrow dataFiltered(): 576 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-09 15:24:47.264316 | timeMax: 2024-05-08 16:24:47.265122 | timeDiff: 5184000.00080538 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-09 14:24:47.264 | timeMax: 2024-05-08 14:24:47.265 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 267916 autoQC01 module APEX long nrow: 1224 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 12 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 840 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 NA p25334/Proteomics/LUMOS_1/dlesli_20240508_DLP247/20240508_001_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p25334/Proteomics/LUMOS_1/dlesli_20240508_DLP247/20240508_001_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... p35100/Proteomics/LUMOS_1/analytic_20240506/20240506_C35100_006_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-10 14:05:46.386353 | timeMax: 2024-05-09 15:05:46.387022 | timeDiff: 5184000.00066924 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-10 13:05:46.386 | timeMax: 2024-05-09 13:05:46.387 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-10 14:26:28.468333 | timeMax: 2024-05-09 15:26:28.469021 | timeDiff: 5184000.00068712 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-10 13:26:28.468 | timeMax: 2024-05-09 13:26:28.469 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 576 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA NA input timeRange: 7776000 | timeMin: 2024-02-17 13:26:35.43 | timeMax: 2024-05-09 13:26:28.469 | timeDiff: 7084793.03900003 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-02-17 13:26:35.43 | timeMax: 2024-05-09 15:27:04.517612 | timeDiff: 7084829.08761215 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-02-17 13:26:35.43 | timeMax: 2024-05-09 13:27:04.518 | timeDiff: 7084829.08799982 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 810 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-11 08:22:08.613054 | timeMax: 2024-05-10 09:22:08.613643 | timeDiff: 5184000.00058937 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-11 07:22:08.61305 | timeMax: 2024-05-10 07:22:08.61364 | timeDiff: 5184000.00058985 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-11 07:22:08.613 | timeMax: 2024-05-10 07:22:08.614 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-11 08:22:18.890169 | timeMax: 2024-05-10 09:22:18.890741 | timeDiff: 5184000.00057268 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-11 07:22:18.89 | timeMax: 2024-05-10 07:22:18.891 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-10 07:22:10.05623 | timeMax: 2024-05-10 07:22:08.614 | timeDiff: 7775998.55777001 nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-10 09:22:32.268409 | timeMax: 2024-05-10 07:22:08.614 | timeDiff: 7772376.34559059 nrow dataFiltered(): 342 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-10 08:22:32.268 | timeMax: 2024-05-10 07:22:08.614 | timeDiff: 7772376.34600019 nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-12 06:16:26.543288 | timeMax: 2024-05-11 07:16:26.543869 | timeDiff: 5184000.00058007 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-12 05:16:26.543 | timeMax: 2024-05-11 05:16:26.544 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-14 07:43:42.092137 | timeMax: 2024-05-13 08:43:42.092728 | timeDiff: 5184000.00059104 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-14 06:43:42.092 | timeMax: 2024-05-13 06:43:42.093 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-06 08:45:14.294991 | timeMax: 2024-05-13 08:45:14.295034 | timeDiff: 604800.000043392 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-14 07:45:26.243392 | timeMax: 2024-05-13 08:45:26.243976 | timeDiff: 5184000.00058341 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-14 06:45:26.243 | timeMax: 2024-05-13 06:45:26.244 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-14 09:48:20.53295 | timeMax: 2024-05-13 10:48:20.533543 | timeDiff: 5184000.00059319 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-14 08:48:20.533 | timeMax: 2024-05-13 08:48:20.534 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-14 09:49:06.176925 | timeMax: 2024-05-13 10:49:06.177512 | timeDiff: 5184000.00058722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-14 08:49:06.177 | timeMax: 2024-05-13 08:49:06.178 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-14 16:52:08.095773 | timeMax: 2024-05-13 17:52:08.096722 | timeDiff: 5184000.00094986 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-14 15:52:08.096 | timeMax: 2024-05-13 15:52:08.097 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_011_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_011_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//NA NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw plotClick: plotClick: p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-07 09:30:23.03057 | timeMax: 2024-05-14 09:30:23.030614 | timeDiff: 604800.000043631 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 08:30:36.924152 | timeMax: 2024-05-14 09:30:36.924724 | timeDiff: 5184000.00057125 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-15 07:30:36.924 | timeMax: 2024-05-14 07:30:36.925 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_011_autoQC01.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_001_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_001_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_001_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... NA p35100/Proteomics/LUMOS_1/analytic_20240506/20240506_C35100_006_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35100/Proteomics/LUMOS_1/analytic_20240506/20240506_C35100_006_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 08:45:30.239838 | timeMax: 2024-05-14 09:45:30.240571 | timeDiff: 5184000.00073314 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-15 07:45:30.24 | timeMax: 2024-05-14 07:45:30.241 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p34963/Proteomics/LUMOS_2/analytic_20240425/20240425_C34963_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 09:14:14.942195 | timeMax: 2024-05-14 10:14:14.943638 | timeDiff: 5184000.00144267 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-15 08:14:14.942 | timeMax: 2024-05-14 08:14:14.944 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_001_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 10:13:37.213272 | timeMax: 2024-05-14 11:13:37.214877 | timeDiff: 5184000.00160527 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-15 09:13:37.213 | timeMax: 2024-05-14 09:13:37.215 | timeDiff: 5184000.00199986 nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw plotClick: plotClick: plotClick: fn has changed to /srv/www/htdocs//NA NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2024-05-07 09:13:39.131 | timeMax: 2024-05-14 09:13:37.215 | timeDiff: 604798.083999872 nFacets: 4 nrow dataFiltered(): 128 using 'ggh4x' package ... p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_031_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 10:28:46.691622 | timeMax: 2024-05-14 11:28:46.69365 | timeDiff: 5184000.00202823 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-15 09:28:46.692 | timeMax: 2024-05-14 09:28:46.694 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 11:40:20.156163 | timeMax: 2024-05-14 12:40:20.157555 | timeDiff: 5184000.0013926 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-15 10:40:20.156 | timeMax: 2024-05-14 10:40:20.158 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw NA p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw Plotting chromatograms ... Read 22032 items NA Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... p25334/Proteomics/LUMOS_1/dlesli_20240508_DLP247/20240508_001_autoQC01.raw NA p31573/Proteomics/LUMOS_1/yichichen_20240315/20240315_001_autoQC01.raw NA Read 22032 items Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw Plotting chromatograms ... plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw p25334/Proteomics/LUMOS_1/dlesli_20240508_DLP247/20240508_001_autoQC01.raw NA p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240429_2PCA/20240429_041_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240429_2PCA/20240429_041_autoQC01.raw NA p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw Plotting chromatograms ... Read 22032 items NA plotClick: p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw NA plotClick: p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw plotClick: plotClick: plotClick: NA p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw plotClick: plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240325/20240325_006_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240325/20240325_006_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p3000/Proteomics/LUMOS_1/pgehrig_20240325/20240325_006_autoQC01.raw plotClick: vals$rawrr: FALSE p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw Plotting chromatograms ... Read 22032 items plotClick: plotClick: fn has changed to /srv/www/htdocs//p25334/Proteomics/LUMOS_1/dlesli_20240508_DLP247/20240508_007_autoQC01.raw Reading raw file: /srv/www/htdocs//p25334/Proteomics/LUMOS_1/dlesli_20240508_DLP247/20240508_007_autoQC01.raw Plotting chromatograms ... Read 22032 items p25334/Proteomics/LUMOS_1/dlesli_20240508_DLP247/20240508_007_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240417_HUNTER/20240417_022_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240417_HUNTER/20240417_022_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240417_HUNTER/20240417_022_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240417_HUNTER/20240417_026_autoQC01.raw NA p31573/Proteomics/LUMOS_1/yichichen_20240315/20240315_016_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240417_HUNTER/20240417_017_autoQC01.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw Plotting chromatograms ... Read 22032 items vals$rawDiag: TRUE vals$rawDiag: FALSE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 12:14:45.030947 | timeMax: 2024-05-14 13:14:45.032062 | timeDiff: 5184000.00111485 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-15 11:14:45.031 | timeMax: 2024-05-14 11:14:45.032 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 13:20:55.848956 | timeMax: 2024-05-14 14:20:55.850496 | timeDiff: 5184000.00154018 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-15 12:20:55.849 | timeMax: 2024-05-14 12:20:55.851 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_001_autoQC01.raw NA p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw NA p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw NA p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_001_autoQC01.raw Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 268334 autoQC01 module APEX long nrow: 804 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 15:45:22.028104 | timeMax: 2024-05-14 16:45:22.029117 | timeDiff: 5184000.00101304 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-15 14:45:22.028 | timeMax: 2024-05-14 14:45:22.029 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_001_autoQC01_20240514113400.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 08:01:10.056659 | timeMax: 2024-05-15 09:01:10.05724 | timeDiff: 5184000.00058103 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 07:01:10.057 | timeMax: 2024-05-15 07:01:10.057 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 08:06:52.741083 | timeMax: 2024-05-15 09:06:52.741662 | timeDiff: 5184000.00057888 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 07:06:52.741 | timeMax: 2024-05-15 07:06:52.742 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... NA p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_018_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 08:25:43.932997 | timeMax: 2024-05-15 09:25:43.933573 | timeDiff: 5184000.00057602 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 07:25:43.933 | timeMax: 2024-05-15 07:25:43.934 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... NA p35100/Proteomics/LUMOS_1/analytic_20240506/20240506_C35100_006_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35100/Proteomics/LUMOS_1/analytic_20240506/20240506_C35100_006_autoQC03dda.raw plotClick: plotClick: p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw plotClick: NA plotClick: fn has changed to /srv/www/htdocs//NA p35114/Proteomics/LUMOS_1/analytic_20240508/20240508_C35114_005_autoQC03dia.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p35100/Proteomics/LUMOS_1/analytic_20240506/20240506_C35100_006_autoQC03dda.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw Plotting chromatograms ... Read 22032 items plotClick: NA p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw plotClick: plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawrr-autoQC03-plotTools 1: runApp plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA plotClick: p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 09:48:37.17419 | timeMax: 2024-05-15 10:48:37.174769 | timeDiff: 5184000.00057888 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 08:48:37.174 | timeMax: 2024-05-15 08:48:37.175 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_1/roschi_20240514/20240514_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/roschi_20240514/20240514_004_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/roschi_20240514/20240514_004_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240506/20240506_003_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240506/20240506_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240506/20240506_003_autoQC03dda.raw NA p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_018_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_018_autoQC03dia.raw NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_018_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... Plotting chromatograms ... p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_018_autoQC03dia.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 09:58:07.671862 | timeMax: 2024-05-15 10:58:07.672451 | timeDiff: 5184000.00058937 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 08:58:07.672 | timeMax: 2024-05-15 08:58:07.672 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p34944/Proteomics/LUMOS_2/analytic_20240423/20240423_C34944_008_autoQC01.raw p34956/Proteomics/LUMOS_2/analytic_20240423/20240423_C34956_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-08 10:58:37.322055 | timeMax: 2024-05-15 10:58:37.322089 | timeDiff: 604800.000034571 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 11:49:38.230084 | timeMax: 2024-05-15 12:49:38.230661 | timeDiff: 5184000.00057721 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 10:49:38.23 | timeMax: 2024-05-15 10:49:38.231 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 268455 autoQC01 module APEX long nrow: 1068 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 12 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-08 13:10:18.560038 | timeMax: 2024-05-15 13:10:18.560081 | timeDiff: 604800.000043392 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 12:10:28.108792 | timeMax: 2024-05-15 13:10:28.109364 | timeDiff: 5184000.0005722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 11:10:28.109 | timeMax: 2024-05-15 11:10:28.109 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 12:56:34.574603 | timeMax: 2024-05-15 13:56:34.575232 | timeDiff: 5184000.00062943 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-03-16 11:56:34.5746 | timeMax: 2024-05-15 11:56:34.57523 | timeDiff: 5184000.0006299 autoQC01 module APEX wide nrow: 268455 autoQC01 module APEX long nrow: 1068 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 12 rows containing missing values (`geom_point()`). nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 11:56:34.575 | timeMax: 2024-05-15 11:56:34.575 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... p35100/Proteomics/LUMOS_1/analytic_20240506/20240506_C35100_006_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 12:58:03.044003 | timeMax: 2024-05-15 13:58:03.044584 | timeDiff: 5184000.00058103 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 11:58:03.044 | timeMax: 2024-05-15 11:58:03.045 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... vals$rawrr: TRUE NA p35100/Proteomics/LUMOS_1/analytic_20240506/20240506_C35100_006_autoQC03dda.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw NA NA p3000/Proteomics/EXPLORIS_1/roschi_20240514/20240514_004_autoQC01.raw p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_017_autoQC01.raw p3000/Proteomics/EXPLORIS_1/roschi_20240514/20240514_004_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 13:14:58.950849 | timeMax: 2024-05-15 14:14:58.951458 | timeDiff: 5184000.00060964 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 12:14:58.951 | timeMax: 2024-05-15 12:14:58.951 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 13:31:26.572955 | timeMax: 2024-05-15 14:31:26.573596 | timeDiff: 5184000.00064063 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 12:31:26.573 | timeMax: 2024-05-15 12:31:26.574 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 14:02:02.752574 | timeMax: 2024-05-15 15:02:02.753159 | timeDiff: 5184000.00058532 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 13:02:02.753 | timeMax: 2024-05-15 13:02:02.753 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 15:21:41.640105 | timeMax: 2024-05-15 16:21:41.640691 | timeDiff: 5184000.00058556 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-16 14:21:41.64 | timeMax: 2024-05-15 14:21:41.641 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 15:21:51.74653 | timeMax: 2024-05-15 16:21:51.74711 | timeDiff: 5184000.00057983 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 14:21:51.747 | timeMax: 2024-05-15 14:21:51.747 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-16 15:22:27.133474 | timeMax: 2024-05-15 16:22:27.134058 | timeDiff: 5184000.00058436 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-16 14:22:27.133 | timeMax: 2024-05-15 14:22:27.134 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... NA NA p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_002_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_002_autoQC03dda.raw p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw NA NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-17 06:40:44.613608 | timeMax: 2024-05-16 07:40:44.614547 | timeDiff: 5184000.00093865 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-17 05:40:44.614 | timeMax: 2024-05-16 05:40:44.615 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-17 09:26:47.831015 | timeMax: 2024-05-16 10:26:47.831599 | timeDiff: 5184000.00058365 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-17 08:26:47.831 | timeMax: 2024-05-16 08:26:47.832 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p35114/Proteomics/LUMOS_2/analytic_20240515/20240515_C35114_003_autoQC01.raw NA p35114/Proteomics/LUMOS_2/analytic_20240515/20240515_C35114_003_autoQC01.raw p35114/Proteomics/LUMOS_2/analytic_20240515/20240515_C35114_003_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-17 09:33:23.602774 | timeMax: 2024-05-16 10:33:23.603585 | timeDiff: 5184000.00081086 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-17 08:33:23.603 | timeMax: 2024-05-16 08:33:23.604 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-17 09:50:50.497604 | timeMax: 2024-05-16 10:50:50.498209 | timeDiff: 5184000.00060439 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-17 08:50:50.498 | timeMax: 2024-05-16 08:50:50.498 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-17 12:19:17.238226 | timeMax: 2024-05-16 13:19:17.239128 | timeDiff: 5184000.00090194 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-17 11:19:17.238 | timeMax: 2024-05-16 11:19:17.239 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... vals$rawrr: TRUE NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_12_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_12_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_12_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_12_autoQC03dda.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-17 13:06:32.212797 | timeMax: 2024-05-16 14:06:32.213887 | timeDiff: 5184000.00109029 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-17 12:06:32.213 | timeMax: 2024-05-16 12:06:32.214 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... vals$rawrr: TRUE NA plotClick: fn has changed to /srv/www/htdocs//NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-17 14:51:31.600615 | timeMax: 2024-05-16 15:51:31.601991 | timeDiff: 5184000.00137544 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-17 13:51:31.601 | timeMax: 2024-05-16 13:51:31.602 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... p35190/Proteomics/TIMSTOF_1/analytic_20240515_/zip/20240515_008_autoQC03dda.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-17 14:59:57.956602 | timeMax: 2024-05-16 15:59:57.957938 | timeDiff: 5184000.0013361 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-17 13:59:57.957 | timeMax: 2024-05-16 13:59:57.958 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-17 15:48:44.338864 | timeMax: 2024-05-16 16:48:44.342537 | timeDiff: 5184000.00367284 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-17 14:48:44.339 | timeMax: 2024-05-16 14:48:44.343 | timeDiff: 5184000.00399995 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA p35114/Proteomics/LUMOS_2/analytic_20240515/20240515_C35114_003_autoQC01.raw p35114/Proteomics/LUMOS_2/analytic_20240515/20240515_C35114_003_autoQC01.raw NA nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_002_autoQC03dda.raw p34837/Proteomics/EXPLORIS_1/analytic_20240418/20240418_C34837_001_autoQC01.raw NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_001_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_001_autoQC01.raw NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-18 05:50:38.297569 | timeMax: 2024-05-17 06:50:38.298145 | timeDiff: 5184000.0005753 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-18 04:50:38.298 | timeMax: 2024-05-17 04:50:38.298 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values (`geom_point()`). NA p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_006_autoQC01_20240514064043.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_017_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_017_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_017_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-18 07:51:25.037169 | timeMax: 2024-05-17 08:51:25.037749 | timeDiff: 5184000.00058031 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-18 06:51:25.037 | timeMax: 2024-05-17 06:51:25.038 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_001_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_001_autoQC01.raw p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_001_autoQC01.raw NA p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_001_autoQC01.raw plotClick: NA p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw NA p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw plotClick: p35015/Proteomics/LUMOS_2/analytic_20240429/20240429_C35015_060_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-18 09:13:19.319614 | timeMax: 2024-05-17 10:13:19.320193 | timeDiff: 5184000.00057936 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-18 08:13:19.32 | timeMax: 2024-05-17 08:13:19.32 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240514/20240514_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-18 10:09:11.464339 | timeMax: 2024-05-17 11:09:11.464921 | timeDiff: 5184000.00058198 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-18 09:09:11.464 | timeMax: 2024-05-17 09:09:11.465 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20240516/20240516_001_autoQC01_r.raw p3000/Proteomics/LUMOS_2/analytics_20240516/20240516_001_autoQC01r.raw NA nFacets: 5 nrow dataFiltered(): 1460 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 6 nrow dataFiltered(): 1752 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 7 nrow dataFiltered(): 2044 using 'ggh4x' package ... Warning: Removed 5 rows containing missing values (`geom_point()`). nFacets: 8 nrow dataFiltered(): 2336 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). nFacets: 9 nrow dataFiltered(): 2628 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). nFacets: 10 nrow dataFiltered(): 2920 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values (`geom_point()`). nFacets: 11 nrow dataFiltered(): 3212 using 'ggh4x' package ... Warning: Removed 17 rows containing missing values (`geom_point()`). p35012/Proteomics/LUMOS_2/analytic_20240429/20240429_C35012_032_autoQC01.raw NA p34705/Proteomics/LUMOS_2/analytic_20240425/20240425_C34705_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-18 10:30:55.658897 | timeMax: 2024-05-17 11:30:55.659494 | timeDiff: 5184000.00059748 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-18 09:30:55.659 | timeMax: 2024-05-17 09:30:55.659 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-18 13:26:16.292709 | timeMax: 2024-05-17 14:26:16.293296 | timeDiff: 5184000.00058675 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-18 12:26:16.293 | timeMax: 2024-05-17 12:26:16.293 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... NA p35157/Proteomics/TIMSTOF_1/analytic_20240516/zip/20240516_006_autoQC03dda.d.zip nrow dataFiltered(): 522 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 504 using 'ggh4x' package ... nFacets: 2 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 198 using 'ggh4x' package ... NA nrow dataFiltered(): 198 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240516/20240516_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240516/20240516_003_autoQC03dia.raw NA nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-19 07:04:19.721658 | timeMax: 2024-05-18 08:04:19.722244 | timeDiff: 5184000.00058556 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-19 06:04:19.722 | timeMax: 2024-05-18 06:04:19.722 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_025_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-20 07:22:31.000318 | timeMax: 2024-05-19 08:22:31.000895 | timeDiff: 5184000.00057697 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-20 06:22:31 | timeMax: 2024-05-19 06:22:31.001 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_025_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_041_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_033_autoQC01.raw vals$rawrr: TRUE p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_033_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_033_autoQC01.raw Reading raw file: /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_033_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/EXPLORIS_1/lkunz_20240506/20240506_002_autoQC01.raw nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 26 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_025_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_033_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_025_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_025_autoQC01.raw Reading raw file: /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_025_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p33927/Proteomics/EXPLORIS_1/analytic_20240508/20240508_C33927_005_autoQC01.raw p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_017_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_017_autoQC01.raw Reading raw file: /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_017_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_017_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_025_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_025_autoQC01.raw Reading raw file: /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_025_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 26 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_041_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_041_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_041_autoQC01.raw Reading raw file: /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_041_autoQC01.raw Plotting chromatograms ... Read 22032 items p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_041_autoQC01.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240430/20240430_005_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_017_autoQC01.raw NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_041_autoQC01.raw plotClick: NA p34715/Proteomics/EXPLORIS_1/analytic_20240328/20240328_C34715_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34715/Proteomics/EXPLORIS_1/analytic_20240328/20240328_C34715_007_autoQC01.raw Reading raw file: /srv/www/htdocs//p34715/Proteomics/EXPLORIS_1/analytic_20240328/20240328_C34715_007_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p3189/Proteomics/EXPLORIS_1/kbende_20240412/20240412_019_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_009_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_009_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_009_autoQC01.raw Reading raw file: /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_009_autoQC01.raw Plotting chromatograms ... Read 22032 items NA Plotting chromatograms ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-20 12:49:11.761174 | timeMax: 2024-05-19 13:49:11.761934 | timeDiff: 5184000.00075984 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-20 11:49:11.761 | timeMax: 2024-05-19 11:49:11.762 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-24 11:49:13.048 | timeMax: 2024-05-19 11:49:11.762 | timeDiff: 4838398.71399999 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-24 11:49:13.048 | timeMax: 2024-04-03 11:49:22.334 | timeDiff: 864009.286000013 nFacets: 4 nrow dataFiltered(): 240 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 144 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). NA p34708/Proteomics/LUMOS_1/analytic_20240326/20240326_C34708_001_autoQC01.raw input timeRange: 7776000 | timeMin: 2024-03-29 11:49:27.085 | timeMax: 2024-04-03 11:49:22.334 | timeDiff: 431995.249000072 nFacets: 4 nrow dataFiltered(): 32 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-29 11:49:27.085 | timeMax: 2024-04-21 11:49:52.553 | timeDiff: 1987225.46799994 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-11 11:49:57.415 | timeMax: 2024-04-21 11:49:52.553 | timeDiff: 863995.138000011 nFacets: 4 nrow dataFiltered(): 96 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-11 11:49:57.415 | timeMax: 2024-04-29 11:49:57.415 | timeDiff: 1555200 nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw plotClick: p34775/Proteomics/LUMOS_1/roschi_20240411_opt_beads_incubation_time/20240411_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-12 14:29:51.973113 | timeMax: 2024-05-19 14:29:51.973148 | timeDiff: 604800.000035048 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-20 13:30:19.787611 | timeMax: 2024-05-19 14:30:19.788188 | timeDiff: 5184000.00057697 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-20 12:30:19.788 | timeMax: 2024-05-19 12:30:19.788 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-20 12:30:19.788 | timeMax: 2024-05-19 12:30:20.94113 | timeDiff: 5184001.15312982 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-20 12:30:19.788 | timeMax: 2024-04-23 12:30:20.941 | timeDiff: 2937601.15299988 nFacets: 4 nrow dataFiltered(): 528 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-20 12:30:19.788 | timeMax: 2024-04-26 12:31:47.158 | timeDiff: 3196887.36999989 nFacets: 4 nrow dataFiltered(): 560 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw input timeRange: 7776000 | timeMin: 2024-03-20 12:30:19.788 | timeMax: 2024-04-27 12:31:51.273 | timeDiff: 3283291.4849999 nFacets: 4 nrow dataFiltered(): 608 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_014_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_014_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_014_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw vals$rawrr: FALSE NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_014_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA vals$rawrr: FALSE p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw Plotting chromatograms ... Read 22032 items p34610/Proteomics/LUMOS_1/mwolleb_20240404/20240404_001_autoQC01.raw vals$rawrr: FALSE p34809/Proteomics/LUMOS_1/roschi_20240404_mouse_mod_DIA/20240404_005a_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34809/Proteomics/LUMOS_1/roschi_20240404_mouse_mod_DIA/20240404_005a_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//NA NA p34809/Proteomics/LUMOS_1/roschi_20240404_mouse_mod_DIA/20240404_001_autoQC01.raw p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_009_autoQC01.raw p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_009_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_009_autoQC01.raw NA p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_009_autoQC01.raw plotClick: NA p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_009_autoQC01.raw p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_005a_autoQC01.raw p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_009_autoQC01.raw plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_009_autoQC01.raw Plotting chromatograms ... Read 22032 items NA vals$rawrr: FALSE p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 07:51:21.557348 | timeMax: 2024-05-20 08:51:21.557922 | timeDiff: 5184000.00057364 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 06:51:21.557 | timeMax: 2024-05-20 06:51:21.558 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:34:24.88696 | timeMax: 2024-05-20 10:34:24.887551 | timeDiff: 5184000.0005908 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:34:24.887 | timeMax: 2024-05-20 08:34:24.888 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:34:24.887 | timeMax: 2024-05-20 08:34:25.85346 | timeDiff: 5184000.96645999 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:34:24.887 | timeMax: 2024-05-20 08:34:25.853 | timeDiff: 5184000.96599984 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:39:27.96766 | timeMax: 2024-05-20 10:39:27.968242 | timeDiff: 5184000.00058246 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:39:27.968 | timeMax: 2024-05-20 08:39:27.968 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:41:17.738348 | timeMax: 2024-05-20 10:41:17.739077 | timeDiff: 5184000.0007298 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:41:17.738 | timeMax: 2024-05-20 08:41:17.739 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_049_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:42:00.941116 | timeMax: 2024-05-20 10:42:00.941702 | timeDiff: 5184000.00058651 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:42:00.941 | timeMax: 2024-05-20 08:42:00.942 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:42:50.319467 | timeMax: 2024-05-20 10:42:50.320048 | timeDiff: 5184000.00058079 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:42:50.319 | timeMax: 2024-05-20 08:42:50.32 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:45:01.391775 | timeMax: 2024-05-20 10:45:01.392363 | timeDiff: 5184000.00058794 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:45:01.392 | timeMax: 2024-05-20 08:45:01.392 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:45:42.628555 | timeMax: 2024-05-20 10:45:42.629143 | timeDiff: 5184000.00058818 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:45:42.629 | timeMax: 2024-05-20 08:45:42.629 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw Plotting chromatograms ... Read 22032 items vals$rawDiag: TRUE plotClick: NA plotChargeState reading index for 20240515_068_autoQC01.raw... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:46:19.395584 | timeMax: 2024-05-20 10:46:19.396202 | timeDiff: 5184000.00061798 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:46:19.396 | timeMax: 2024-05-20 08:46:19.396 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:46:54.071799 | timeMax: 2024-05-20 10:46:54.072494 | timeDiff: 5184000.00069499 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:46:54.072 | timeMax: 2024-05-20 08:46:54.072 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:48:22.896343 | timeMax: 2024-05-20 10:48:22.897006 | timeDiff: 5184000.00066304 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:48:22.896 | timeMax: 2024-05-20 08:48:22.897 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:50:01.949176 | timeMax: 2024-05-20 10:50:01.949826 | timeDiff: 5184000.00065064 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:50:01.949 | timeMax: 2024-05-20 08:50:01.95 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:50:39.731596 | timeMax: 2024-05-20 10:50:39.732258 | timeDiff: 5184000.00066161 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:50:39.732 | timeMax: 2024-05-20 08:50:39.732 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_041_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_041_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_057_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_049_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:56:23.716873 | timeMax: 2024-05-20 10:56:23.717523 | timeDiff: 5184000.00064945 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 08:56:23.717 | timeMax: 2024-05-20 08:56:23.718 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 09:58:30.98772 | timeMax: 2024-05-20 10:58:30.988587 | timeDiff: 5184000.00086737 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-21 08:58:30.988 | timeMax: 2024-05-20 08:58:30.989 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 10:02:59.790148 | timeMax: 2024-05-20 11:02:59.790763 | timeDiff: 5184000.00061536 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 09:02:59.79 | timeMax: 2024-05-20 09:02:59.791 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 10:12:39.51939 | timeMax: 2024-05-20 11:12:39.520072 | timeDiff: 5184000.00068188 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 09:12:39.519 | timeMax: 2024-05-20 09:12:39.52 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 11:54:33.847963 | timeMax: 2024-05-20 12:54:33.848571 | timeDiff: 5184000.00060725 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 10:54:33.848 | timeMax: 2024-05-20 10:54:33.849 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 12:18:21.475892 | timeMax: 2024-05-20 13:18:21.4765 | timeDiff: 5184000.00060725 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 11:18:21.476 | timeMax: 2024-05-20 11:18:21.477 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 13:24:59.500309 | timeMax: 2024-05-20 14:24:59.500911 | timeDiff: 5184000.00060248 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 12:24:59.5 | timeMax: 2024-05-20 12:24:59.501 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-21 15:58:19.683702 | timeMax: 2024-05-20 16:58:19.684297 | timeDiff: 5184000.00059438 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-21 14:58:19.684 | timeMax: 2024-05-20 14:58:19.684 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_069_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_069_autoQC03dda.raw NA p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_018_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_018_autoQC03dia.raw plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_018_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA Plotting chromatograms ... nrow dataFiltered(): 312 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA nrow dataFiltered(): 312 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-22 06:28:55.269117 | timeMax: 2024-05-21 07:28:55.269712 | timeDiff: 5184000.00059485 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 73 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-22 05:28:55.269 | timeMax: 2024-05-21 05:28:55.27 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 73 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 146 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). p35195/Proteomics/QEXACTIVE_1/analytic_20240515/20240516_C35195_006_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 299 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... p35195/Proteomics/QEXACTIVE_1/analytic_20240515/20240515_C35195_007_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-22 08:56:12.156069 | timeMax: 2024-05-21 09:56:12.156657 | timeDiff: 5184000.00058746 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-22 07:56:12.15607 | timeMax: 2024-05-21 07:56:12.15666 | timeDiff: 5184000.00058985 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-22 07:56:12.156 | timeMax: 2024-05-21 07:56:12.157 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-22 08:58:01.268514 | timeMax: 2024-05-21 09:58:01.269107 | timeDiff: 5184000.00059247 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-22 07:58:01.269 | timeMax: 2024-05-21 07:58:01.269 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 312 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-22 09:01:16.59993 | timeMax: 2024-05-21 10:01:16.600531 | timeDiff: 5184000.00060177 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-22 09:05:53.678952 | timeMax: 2024-05-21 10:05:53.679547 | timeDiff: 5184000.00059414 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-22 08:05:53.679 | timeMax: 2024-05-21 08:05:53.68 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 864 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p25334/Proteomics/LUMOS_1/dlesli_20240517_DLP248/20240517_011_autoQC01.raw p25334/Proteomics/LUMOS_1/dlesli_20240517_DLP248/20240517_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p25334/Proteomics/LUMOS_1/dlesli_20240517_DLP248/20240517_011_autoQC01.raw plotClick: NA p25334/Proteomics/LUMOS_1/dlesli_20240517_DLP248/20240517_011_autoQC01.raw plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p25334/Proteomics/LUMOS_1/dlesli_20240517_DLP248/20240517_011_autoQC01.raw Plotting chromatograms ... Read 22032 items p25334/Proteomics/LUMOS_1/dlesli_20240517_DLP248/20240517_011_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-22 13:46:27.016775 | timeMax: 2024-05-21 14:46:27.017869 | timeDiff: 5184000.0010941 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-22 12:46:27.017 | timeMax: 2024-05-21 12:46:27.018 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_013_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_013_autoQC01.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-22 13:47:20.853812 | timeMax: 2024-05-21 14:47:20.855208 | timeDiff: 5184000.00139618 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-22 12:47:20.854 | timeMax: 2024-05-21 12:47:20.855 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-22 14:07:01.581122 | timeMax: 2024-05-21 15:07:01.581712 | timeDiff: 5184000.00059056 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-22 13:07:01.581 | timeMax: 2024-05-21 13:07:01.582 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_013_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_013_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-23 07:48:18.987422 | timeMax: 2024-05-22 08:48:18.988019 | timeDiff: 5184000.00059676 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-23 06:48:18.987 | timeMax: 2024-05-22 06:48:18.988 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_013_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_013_autoQC01.raw nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240516/20240516_002_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240516/20240516_002_autoQC03dda.raw NA plotClick: p3000/Proteomics/LUMOS_2/analytics_20240516/20240516_002_autoQC03dda.raw NA p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_014_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_014_autoQC03dia.raw NA p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_014_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-23 09:45:34.885308 | timeMax: 2024-05-22 10:45:34.8859 | timeDiff: 5184000.00059247 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-23 08:45:34.885 | timeMax: 2024-05-22 08:45:34.886 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-23 09:45:59.851833 | timeMax: 2024-05-22 10:45:59.852419 | timeDiff: 5184000.00058579 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-23 08:45:59.852 | timeMax: 2024-05-22 08:45:59.852 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_001_autoQC01.raw NA Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 268983 autoQC01 module APEX long nrow: 840 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p3000/Proteomics/LUMOS_2/analytics_20240516/20240516_002_autoQC03dda.raw NA NA p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_003_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_003_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_003_autoQC03dia.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-23 09:49:17.94731 | timeMax: 2024-05-22 10:49:17.947894 | timeDiff: 5184000.00058341 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-23 08:49:17.947 | timeMax: 2024-05-22 08:49:17.948 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_004_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_004_autoQC01.raw plotClick: NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_005_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_005_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_005_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_005_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_005_autoQC03dia.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-23 10:03:09.253167 | timeMax: 2024-05-22 11:03:09.253756 | timeDiff: 5184000.00058866 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-03-23 09:03:09.25317 | timeMax: 2024-05-22 09:03:09.25376 | timeDiff: 5184000.00059009 Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 268983 autoQC01 module APEX long nrow: 1116 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 10 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 0 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 autoQC01 module APEX long nrow: 0 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 autoQC01 module APEX long nrow: 0 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 autoQC01 module APEX long nrow: 1116 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 10 rows containing missing values (`geom_point()`). autoQC01 module APEX long nrow: 840 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 3 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-03-23 09:03:09.253 | timeMax: 2024-05-22 09:03:09.254 | timeDiff: 5184000.00099993 nFacets: 3 nrow dataFiltered(): 299 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-15 11:32:43.134153 | timeMax: 2024-05-22 11:32:43.134199 | timeDiff: 604800.000046492 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-23 12:37:37.499644 | timeMax: 2024-05-22 13:37:37.500243 | timeDiff: 5184000.00059867 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-23 11:37:37.5 | timeMax: 2024-05-22 11:37:37.5 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240520_073_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240520_073_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240520_073_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-24 08:36:01.487678 | timeMax: 2024-05-23 09:36:01.488296 | timeDiff: 5184000.00061822 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-24 07:36:01.488 | timeMax: 2024-05-23 07:36:01.488 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). vals$rawrr: TRUE NA p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_002_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-24 11:42:35.437781 | timeMax: 2024-05-23 12:42:35.438366 | timeDiff: 5184000.00058484 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 79 rows containing missing values (`geom_point()`). Warning: Removed 13 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-24 10:42:35.438 | timeMax: 2024-05-23 10:42:35.438 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 79 rows containing missing values (`geom_point()`). Warning: Removed 13 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 325 using 'ggh4x' package ... p35065/Proteomics/QEXACTIVE_1/analytic_20240522/20240522_C35065_005_autoQC03dda.raw NA p35155/Proteomics/QEXACTIVE_1/analytic_20240514/20240514_C35155_001r_autoQC01.raw p35065/Proteomics/QEXACTIVE_1/analytic_20240522/20240522_C35065_004_autoQC01.raw p35065/Proteomics/QEXACTIVE_1/analytic_20240522/20240522_C35065_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-24 12:50:08.222516 | timeMax: 2024-05-23 13:50:08.223098 | timeDiff: 5184000.00058198 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-24 11:50:08.223 | timeMax: 2024-05-23 11:50:08.223 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-24 14:18:10.855519 | timeMax: 2024-05-23 15:18:10.856097 | timeDiff: 5184000.00057817 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-24 13:18:10.856 | timeMax: 2024-05-23 13:18:10.856 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-24 14:18:51.484246 | timeMax: 2024-05-23 15:18:51.484835 | timeDiff: 5184000.00058818 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-24 13:18:51.484 | timeMax: 2024-05-23 13:18:51.485 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_002_autoQC01.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_002_autoQC01.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_013_autoQC01.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_002_autoQC01.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_013_autoQC01.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_002_autoQC01.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_013_autoQC01.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_013_autoQC01.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_002_autoQC01.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_013_autoQC01.raw NA p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_002_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-24 15:54:35.281135 | timeMax: 2024-05-23 16:54:35.281712 | timeDiff: 5184000.00057697 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-24 14:54:35.281 | timeMax: 2024-05-23 14:54:35.282 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_002_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_003_autoQC03dia.raw p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_003_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-24 16:19:10.233291 | timeMax: 2024-05-23 17:19:10.233877 | timeDiff: 5184000.00058579 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-24 15:19:10.233 | timeMax: 2024-05-23 15:19:10.234 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_002_autoQC03dda.raw NA p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_015_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_003_autoQC03dia.raw NA nrow dataFiltered(): 325 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_002_autoQC03dda.raw NA nrow dataFiltered(): 325 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 325 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p3000/Proteomics/LUMOS_2/analytics_20240513/20240513_002_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_002_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240521/20240521_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-25 05:22:54.7733 | timeMax: 2024-05-24 06:22:54.77389 | timeDiff: 5184000.00059056 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-25 04:22:54.773 | timeMax: 2024-05-24 04:22:54.774 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-17 06:23:35.426471 | timeMax: 2024-05-24 06:23:35.426495 | timeDiff: 604800.000024319 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-25 08:09:07.935511 | timeMax: 2024-05-24 09:09:07.936106 | timeDiff: 5184000.00059509 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-25 07:09:07.936 | timeMax: 2024-05-24 07:09:07.936 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-25 08:16:08.37752 | timeMax: 2024-05-24 09:16:08.378103 | timeDiff: 5184000.00058293 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 912 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-25 07:16:08.378 | timeMax: 2024-05-24 07:16:08.378 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 912 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-25 09:49:14.478117 | timeMax: 2024-05-24 10:49:14.478702 | timeDiff: 5184000.00058556 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-25 08:49:14.478 | timeMax: 2024-05-24 08:49:14.479 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-25 14:06:21.785284 | timeMax: 2024-05-24 15:06:21.785867 | timeDiff: 5184000.00058341 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-25 13:06:21.785 | timeMax: 2024-05-24 13:06:21.786 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-25 18:13:20.476257 | timeMax: 2024-05-24 19:13:20.476851 | timeDiff: 5184000.00059485 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-25 17:13:20.476 | timeMax: 2024-05-24 17:13:20.477 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_004_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-25 18:13:30.735025 | timeMax: 2024-05-24 19:13:30.735618 | timeDiff: 5184000.00059271 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-25 17:13:30.735 | timeMax: 2024-05-24 17:13:30.736 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values (`geom_point()`). nrow dataFiltered(): 325 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_004_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_005_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-27 07:13:40.91438 | timeMax: 2024-05-26 08:13:40.914971 | timeDiff: 5184000.00059056 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-27 06:13:40.914 | timeMax: 2024-05-26 06:13:40.915 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-27 07:25:28.934887 | timeMax: 2024-05-26 08:25:28.935482 | timeDiff: 5184000.00059438 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-27 06:25:28.935 | timeMax: 2024-05-26 06:25:28.935 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p34809/Proteomics/LUMOS_1/roschi_20240404_mouse_mod_DIA/20240404_005a_autoQC01.raw nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p25334/Proteomics/LUMOS_1/dlesli_20240508_DLP247/20240508_001_autoQC01.raw nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). vals$rawrr: TRUE nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_016_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_016_autoQC01.raw Reading raw file: /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_016_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 08:04:37.604446 | timeMax: 2024-05-27 09:04:37.605058 | timeDiff: 5184000.00061178 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 input timeRange: 7776000 | timeMin: 2024-03-28 07:04:37.604 | timeMax: 2024-05-27 07:04:37.605 | timeDiff: 5184000.00099993 nFacets: 3 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? plotClick: fn has changed to /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524_dda/20240524_C35273_019_autoQC03dda.raw p35273/Proteomics/LUMOS_2/analytic_20240524_dda/20240524_C35273_019_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 08:04:54.422852 | timeMax: 2024-05-27 09:04:54.423539 | timeDiff: 5184000.0006876 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-28 07:04:54.423 | timeMax: 2024-05-27 07:04:54.424 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p35273/Proteomics/LUMOS_2/analytic_20240524_dda/20240524_C35273_018_autoQC01_dda.raw plotClick: fn has changed to /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524_dda/20240524_C35273_018_autoQC01_dda.raw nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_019_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_019_autoQC03dia.raw NA plotClick: p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_019_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_003_autoQC03dia.raw p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_003_autoQC03dia.raw Execution halted