Listening on http://127.0.0.1:38371 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 09:40:48.971221 | timeMax: 2024-05-27 10:40:48.971803 | timeDiff: 5184000.00058174 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 884 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-28 08:40:48.97122 | timeMax: 2024-05-27 08:40:48.9718 | timeDiff: 5184000.00058007 nFacets: 4 nrow dataFiltered(): 884 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-28 08:40:48.971 | timeMax: 2024-05-27 08:40:48.972 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 884 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p35279/Proteomics/FUSION_2/aeberle_20240524/20240524_005_autoQC03dda.raw p35279/Proteomics/FUSION_2/aeberle_20240524/20240524_005_autoQC03dda.raw plotClick: NA p35279/Proteomics/FUSION_2/aeberle_20240524/20240524_005_autoQC03dda.raw NA p35279/Proteomics/FUSION_2/aeberle_20240524/20240524_005_autoQC03dda.raw plotClick: plotClick: p35279/Proteomics/FUSION_2/aeberle_20240524/20240524_005_autoQC03dda.raw plotClick: plotClick: NA p35279/Proteomics/FUSION_2/aeberle_20240524/20240524_005_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35279/Proteomics/FUSION_2/aeberle_20240524/20240524_005_autoQC03dia.raw plotClick: NA nrow dataFiltered(): 884 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw nFacets: 4 nrow dataFiltered(): 884 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 10:56:42.760619 | timeMax: 2024-05-27 11:56:42.761184 | timeDiff: 5184000.00056481 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-28 09:56:42.76062 | timeMax: 2024-05-27 09:56:42.76118 | timeDiff: 5184000.00055981 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-03-28 09:56:42.761 | timeMax: 2024-05-27 09:56:42.761 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 11:39:55.691907 | timeMax: 2024-05-27 12:39:55.69247 | timeDiff: 5184000.00056219 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 11:46:19.145139 | timeMax: 2024-05-27 12:46:19.14571 | timeDiff: 5184000.0005703 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-28 10:46:19.145 | timeMax: 2024-05-27 10:46:19.146 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_003_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_068_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 76 rows containing missing values (`geom_point()`). Warning: Removed 21 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 11:47:38.405868 | timeMax: 2024-05-27 12:47:38.406435 | timeDiff: 5184000.00056767 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-28 10:47:38.406 | timeMax: 2024-05-27 10:47:38.406 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 11:51:43.227086 | timeMax: 2024-05-27 12:51:43.227661 | timeDiff: 5184000.00057435 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-28 10:51:43.227 | timeMax: 2024-05-27 10:51:43.228 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20240527/20240527_001_autoQC01.raw p35273/Proteomics/LUMOS_2/analytic_20240524_dda/20240524_C35273_005_autoQC01_dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240527/20240527_001_autoQC01.raw p35273/Proteomics/LUMOS_2/analytic_20240524_dda/20240524_C35273_001_autoQC01_dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 12:01:04.408251 | timeMax: 2024-05-27 13:01:04.408819 | timeDiff: 5184000.00056839 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-28 11:01:04.408 | timeMax: 2024-05-27 11:01:04.409 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p35273/Proteomics/LUMOS_2/analytic_20240524_dda/20240524_C35273_019_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524_dda/20240524_C35273_019_autoQC03dda.raw NA p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_019_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_019_autoQC03dia.raw NA plotClick: p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_019_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 13:29:54.063288 | timeMax: 2024-05-27 14:29:54.063864 | timeDiff: 5184000.00057554 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-28 12:29:54.063 | timeMax: 2024-05-27 12:29:54.064 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20240527/20240527_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240527/20240527_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240527/20240527_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240527/20240527_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240527/20240527_001_autoQC01.raw nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p35273/Proteomics/LUMOS_2/analytic_20240524_dda/20240524_C35273_019_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524_dda/20240524_C35273_019_autoQC03dda.raw p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_019_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 14:01:12.409566 | timeMax: 2024-05-27 15:01:12.410129 | timeDiff: 5184000.00056243 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-28 13:01:12.41 | timeMax: 2024-05-27 13:01:12.41 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 269566 autoQC01 module APEX long nrow: 1104 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 6 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_001_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_004_autoQC01.raw plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_004_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_001_autoQC01_20240508071507.raw fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_004_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_004_autoQC01.raw Plotting chromatograms ... Read 22032 items NA Warning: Removed 6 rows containing missing values (`geom_point()`). Plotting chromatograms ... Read 22032 items Warning: Removed 6 rows containing missing values (`geom_point()`). Plotting chromatograms ... Read 22032 items Warning: Removed 6 rows containing missing values (`geom_point()`). Plotting chromatograms ... Read 22032 items Warning: Removed 6 rows containing missing values (`geom_point()`). Plotting chromatograms ... Read 22032 items Warning: Removed 6 rows containing missing values (`geom_point()`). Plotting chromatograms ... Read 22032 items Warning: Removed 6 rows containing missing values (`geom_point()`). Plotting chromatograms ... Read 22032 items Warning: Removed 6 rows containing missing values (`geom_point()`). Plotting chromatograms ... Read 22032 items Plotting chromatograms ... p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_004_autoQC01.raw plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_004_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_002_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_001_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_001_autoQC01_20240508071507.raw NA plot_click: p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_001_autoQC01.raw | plot_click: p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_008_autoQC01.raw | plot_click: p35089/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35089_001_autoQC01.raw fn has changed to /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_001_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_001_autoQC01.raw Plotting chromatograms ... p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_001_autoQC01.raw Plotting chromatograms ... NA autoQC01 module APEX long nrow: 1044 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p34926/Proteomics/QEXACTIVE_1/analytic_20240426/20240426_C34926_001_autoQC01.raw p34985/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34985_001r_autoQC01.raw p34995/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34995_001_autoQC01.raw plot_click: p34995/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34995_001_autoQC01.raw | plot_click: p34985/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34985_010_autoQC01.raw | plot_click: p34985/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34985_010_autoQC01.raw | plot_click: p34985/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34985_001r_autoQC01.raw | plot_click: p34985/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34985_001r_autoQC01.raw fn has changed to /srv/www/htdocs//p34995/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34995_001_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p34995/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34995_001_autoQC01.raw Plotting chromatograms ... NA autoQC01 module APEX long nrow: 1044 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, TPVITGAPYEYR, VEATFGVDESNAK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 1044 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, TPVITGAPYEYR, VEATFGVDESNAK, DGLDAASYYAPVR APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 1044 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, TPVITGAPYEYR, VEATFGVDESNAK, DGLDAASYYAPVR, GAGSSEPVTGLDAK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 1044 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, TPVITGAPYEYR, VEATFGVDESNAK, DGLDAASYYAPVR, GAGSSEPVTGLDAK, GTFIIDPAAVIR APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 1044 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, TPVITGAPYEYR, VEATFGVDESNAK, DGLDAASYYAPVR, GAGSSEPVTGLDAK, GTFIIDPAAVIR, ADVTPADFSEWSK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 1044 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, TPVITGAPYEYR, VEATFGVDESNAK, DGLDAASYYAPVR, GAGSSEPVTGLDAK, GTFIIDPAAVIR, ADVTPADFSEWSK, YILAGVENSK APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 1044 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, TPVITGAPYEYR, VEATFGVDESNAK, DGLDAASYYAPVR, GAGSSEPVTGLDAK, GTFIIDPAAVIR, ADVTPADFSEWSK, YILAGVENSK, GTFIIDPGGVIR APEXAUC.lg2 Warning: Removed 20 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 3828 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, TPVITGAPYEYR, VEATFGVDESNAK, DGLDAASYYAPVR, GAGSSEPVTGLDAK, GTFIIDPAAVIR, ADVTPADFSEWSK, YILAGVENSK, GTFIIDPGGVIR APEXAUC.lg2 Warning: Removed 178 rows containing missing values (`geom_point()`). Warning: Removed 22 rows containing missing values (`geom_line()`). Read 22032 items Reading raw file: /srv/www/htdocs//p34995/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34995_001_autoQC01.raw Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p34995/Proteomics/QEXACTIVE_1/analytic_20240423/20240423_C34995_001_autoQC01.raw Plotting chromatograms ... Warning: Removed 178 rows containing missing values (`geom_point()`). Warning: Removed 22 rows containing missing values (`geom_line()`). Read 22032 items Plotting chromatograms ... p35049/Proteomics/QEXACTIVE_1/analytic_20240430/20240430_C35049_001_autoQC01.raw plot_click: p34808/Proteomics/QEXACTIVE_1/analytic_20240523/20240523_C34808_001_autoQC01.raw | plot_click: p35065/Proteomics/QEXACTIVE_1/analytic_20240522/20240522_C35065_004_autoQC01.raw | plot_click: p35065/Proteomics/QEXACTIVE_1/analytic_20240522/20240522_C35065_001_autoQC01.raw fn has changed to /srv/www/htdocs//p34808/Proteomics/QEXACTIVE_1/analytic_20240523/20240523_C34808_001_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p34808/Proteomics/QEXACTIVE_1/analytic_20240523/20240523_C34808_001_autoQC01.raw Plotting chromatograms ... p34808/Proteomics/QEXACTIVE_1/analytic_20240523/20240523_C34808_001_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p34808/Proteomics/QEXACTIVE_1/analytic_20240523/20240523_C34808_001_autoQC01.raw Plotting chromatograms ... plot_click: p34922/Proteomics/QEXACTIVE_1/analytic_20240417/20240417_C34922_004_autoQC01.raw | plot_click: p34922/Proteomics/QEXACTIVE_1/analytic_20240417/20240417_C34922_001_autoQC01.raw | plot_click: p34622/Proteomics/QEXACTIVE_1/analytic_20240417/20240417_C34622_001_autoQC01.raw | plot_click: p34693/Proteomics/QEXACTIVE_1/analytic_20240417/20240417_C34693_001_autoQC01.raw fn has changed to /srv/www/htdocs//p34922/Proteomics/QEXACTIVE_1/analytic_20240417/20240417_C34922_004_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p34922/Proteomics/QEXACTIVE_1/analytic_20240417/20240417_C34922_004_autoQC01.raw Plotting chromatograms ... p34922/Proteomics/QEXACTIVE_1/analytic_20240417/20240417_C34922_004_autoQC01.raw NA plot_click: p34789/Proteomics/QEXACTIVE_1/analytic_20240402/20240402_C34789_005_autoQC01.raw | plot_click: p34789/Proteomics/QEXACTIVE_1/analytic_20240402/20240402_C34789_002_autoQC01.raw | plot_click: p34788/Proteomics/QEXACTIVE_1/analytic_20240402/20240402_C34788_002_autoQC01.raw | plot_click: p34788/Proteomics/QEXACTIVE_1/analytic_20240402/20240402_C34788_001_autoQC01.raw fn has changed to /srv/www/htdocs//p34789/Proteomics/QEXACTIVE_1/analytic_20240402/20240402_C34789_005_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p34789/Proteomics/QEXACTIVE_1/analytic_20240402/20240402_C34789_005_autoQC01.raw Plotting chromatograms ... p34789/Proteomics/QEXACTIVE_1/analytic_20240402/20240402_C34789_005_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 14:06:20.566131 | timeMax: 2024-05-27 15:06:20.5667 | timeDiff: 5184000.00056982 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-28 13:06:20.566 | timeMax: 2024-05-27 13:06:20.567 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values (`geom_point()`). p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_025_autoQC01.raw p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_025_autoQC01.raw p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_003_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240520_073_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_066_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240520_073_autoQC01.raw p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_003_autoQC01.raw p35059/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35059_001_autoQC01.raw p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_037_autoQC01.raw NA p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_013_autoQC01.raw p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_001_autoQC01.raw p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_003_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw autoQC01 module APEX long nrow: 4048 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK, TPVITGAPYEYR, VEATFGVDESNAK, DGLDAASYYAPVR, GAGSSEPVTGLDAK, GTFIIDPAAVIR, ADVTPADFSEWSK, YILAGVENSK, GTFIIDPGGVIR APEXAUC.lg2 Warning: Removed 36 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). plot_click: p35089/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35089_001_autoQC01.raw | plot_click: p35089/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35089_001_autoQC01.raw | plot_click: p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_001_autoQC01.raw fn has changed to /srv/www/htdocs//p35089/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35089_001_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p35089/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35089_001_autoQC01.raw Plotting chromatograms ... p35089/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35089_001_autoQC01.raw NA Read 22032 items Reading raw file: /srv/www/htdocs//p35089/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35089_001_autoQC01.raw Plotting chromatograms ... p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw | plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw Plotting chromatograms ... p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw NA Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_002_autoQC01.raw Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-28 15:11:46.466568 | timeMax: 2024-05-27 16:11:46.467149 | timeDiff: 5184000.00058126 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-28 14:11:46.467 | timeMax: 2024-05-27 14:11:46.467 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). p34936/Proteomics/FUSION_2/lorerossi_20240419/20240422_010_autoQC01.raw p34936/Proteomics/FUSION_2/lorerossi_20240419/20240422_010_autoQC01.raw NA nFacets: 5 nrow dataFiltered(): 1240 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). p3000/Proteomics/FUSION_2/chiawei_20240527/20240527_002_autoQC01.raw nFacets: 6 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 7 nrow dataFiltered(): 1736 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 8 nrow dataFiltered(): 1984 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 9 nrow dataFiltered(): 2232 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 10 nrow dataFiltered(): 2480 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 11 nrow dataFiltered(): 2728 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-29 07:49:06.225912 | timeMax: 2024-05-28 08:49:06.226488 | timeDiff: 5184000.00057554 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-29 06:49:06.22591 | timeMax: 2024-05-28 06:49:06.22649 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-03-29 06:49:06.226 | timeMax: 2024-05-28 06:49:06.226 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-29 09:00:46.818899 | timeMax: 2024-05-28 10:00:46.819547 | timeDiff: 5184000.00064826 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-29 08:00:46.819 | timeMax: 2024-05-28 08:00:46.82 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 269643 autoQC01 module APEX long nrow: 948 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20240527/20240527_002_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-30 08:55:33.661 | timeMax: 2024-05-29 09:55:33.661573 | timeDiff: 5184000.0005722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-30 07:55:33.661 | timeMax: 2024-05-29 07:55:33.662 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values (`geom_point()`). p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_019_autoQC01.raw p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_013_autoQC01.raw p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_013_autoQC01.raw p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_031_autoQC01.raw p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_031_autoQC01.raw NA p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_031_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240520_073_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240520_073_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw NA p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240520_073_autoQC01.raw Warning in observe() : timeDiff is higher than timeRange NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-30 08:56:37.96994 | timeMax: 2024-05-29 09:56:37.970517 | timeDiff: 5184000.00057673 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in observe() : timeDiff is higher than timeRange nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-30 07:56:37.97 | timeMax: 2024-05-29 07:56:37.971 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values (`geom_point()`). p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_031_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_068_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_057_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-30 08:56:53.38722 | timeMax: 2024-05-29 09:56:53.387789 | timeDiff: 5184000.00056934 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01.raw nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-30 07:56:53.387 | timeMax: 2024-05-29 07:56:53.388 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240520/20240520_001_autoQC01_20240520110011.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240520_073_autoQC01.raw nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_003_autoQC01.raw p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_007_autoQC01.raw NA p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_007_autoQC01.raw NA p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_013_autoQC01.raw vals$rawrr: TRUE p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_031_autoQC01.raw p35059/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35059_005_autoQC01.raw p35059/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35059_005_autoQC01.raw p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw p35059/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35059_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_037_autoQC01.raw p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_003_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw vals$rawrr: TRUE NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-30 12:56:34.612296 | timeMax: 2024-05-29 13:56:34.612867 | timeDiff: 5184000.00057125 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-30 11:56:34.612 | timeMax: 2024-05-29 11:56:34.613 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-31 09:27:48.613701 | timeMax: 2024-05-30 09:27:48.614271 | timeDiff: 5184000.00056982 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-31 07:27:48.6137 | timeMax: 2024-05-30 07:27:48.61427 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-31 07:27:48.614 | timeMax: 2024-05-30 07:27:48.614 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_004_autoQC03dda.raw nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-31 10:17:53.842415 | timeMax: 2024-05-30 10:17:53.843662 | timeDiff: 5184000.00124764 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-31 08:17:53.84241 | timeMax: 2024-05-30 08:17:53.84366 | timeDiff: 5184000.00125003 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-31 08:17:53.842 | timeMax: 2024-05-30 08:17:53.844 | timeDiff: 5184000.00200009 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_004_autoQC03dda.raw NA nrow dataFiltered(): 216 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_005_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_005_autoQC03dia.raw p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_004_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-31 14:24:27.183542 | timeMax: 2024-05-30 14:24:27.184232 | timeDiff: 5184000.00068998 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-31 12:24:27.18354 | timeMax: 2024-05-30 12:24:27.18423 | timeDiff: 5184000.00068998 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-31 12:24:27.184 | timeMax: 2024-05-30 12:24:27.184 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-31 14:43:25.65748 | timeMax: 2024-05-30 14:43:25.658051 | timeDiff: 5184000.00057077 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-31 12:43:25.657 | timeMax: 2024-05-30 12:43:25.658 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-31 12:43:25.657 | timeMax: 2024-05-30 12:43:28.9933 | timeDiff: 5184003.3362999 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-31 12:43:25.657 | timeMax: 2024-05-30 12:43:28.993 | timeDiff: 5184003.33599997 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-02 12:46:04.603 | timeMax: 2024-05-30 12:43:28.993 | timeDiff: 5011044.3900001 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw plotClick: input timeRange: 7776000 | timeMin: 2024-04-01 12:46:08.152 | timeMax: 2024-05-30 12:43:28.993 | timeDiff: 5097440.84100008 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-31 15:01:25.438334 | timeMax: 2024-05-30 15:01:25.438964 | timeDiff: 5184000.00062943 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-31 13:01:25.438 | timeMax: 2024-05-30 13:01:25.439 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-23 15:01:33.262455 | timeMax: 2024-05-30 15:01:33.262498 | timeDiff: 604800.000043631 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_001_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_001_autoQC01.raw p35189/Proteomics/LUMOS_1/analytic_20240529/20240529_C35189_001_autoQC01.raw p35189/Proteomics/LUMOS_1/analytic_20240529/20240529_C35189_001_autoQC01.raw NA p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_001_autoQC01.raw NA p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw vals$rawrr: TRUE p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_001_autoQC01.raw Plotting chromatograms ... Read 22032 items nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw plotClick: NA Plotting chromatograms ... nrow dataFiltered(): 572 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-01 12:49:24.384 | timeMax: 2024-05-30 12:43:28.993 | timeDiff: 5097244.60899997 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... Warning in observe() : timeDiff is higher than timeRange NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 2592000 | timeMin: 2024-03-31 15:17:07.469388 | timeMax: 2024-05-30 15:17:07.469954 | timeDiff: 5184000.00056529 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 2592000 | timeMin: 2024-04-30 15:17:08.473208 | timeMax: 2024-05-30 15:17:07.469954 | timeDiff: 2591998.99674559 nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... input timeRange: 2592000 | timeMin: 2024-04-30 13:17:08.47321 | timeMax: 2024-05-30 13:17:07.46995 | timeDiff: 2591998.9967401 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... input timeRange: 2592000 | timeMin: 2024-04-30 16:17:08.871473 | timeMax: 2024-05-30 13:17:07.46995 | timeDiff: 2588398.59847665 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... input timeRange: 2592000 | timeMin: 2024-04-30 13:17:08.473 | timeMax: 2024-05-30 13:17:07.47 | timeDiff: 2591998.99699998 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... input timeRange: 2592000 | timeMin: 2024-04-30 16:17:10.512983 | timeMax: 2024-05-30 13:17:07.47 | timeDiff: 2588396.95701742 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... input timeRange: 2592000 | timeMin: 2024-04-30 14:17:10.513 | timeMax: 2024-05-30 13:17:07.47 | timeDiff: 2588396.95700002 input timeRange: 7776000 | timeMin: 2024-03-31 15:17:14.515645 | timeMax: 2024-05-30 15:17:14.526785 | timeDiff: 5184000.01113987 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-31 13:17:14.516 | timeMax: 2024-05-30 13:17:14.527 | timeDiff: 5184000.01099992 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-31 17:48:27.785655 | timeMax: 2024-05-30 17:48:27.786232 | timeDiff: 5184000.00057697 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-31 15:48:27.786 | timeMax: 2024-05-30 15:48:27.786 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p35354/Proteomics/LUMOS_1/analytic_20240530/20240530_C35354_001_autoQC01.raw NA p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw p35189/Proteomics/LUMOS_1/analytic_20240529/20240529_C35189_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35189/Proteomics/LUMOS_1/analytic_20240529/20240529_C35189_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_001_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_001_autoQC01.raw NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 624 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-01 12:17:44.663449 | timeMax: 2024-05-31 12:17:44.664025 | timeDiff: 5184000.00057673 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-01 10:17:44.663 | timeMax: 2024-05-31 10:17:44.664 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... p35318/Proteomics/TIMSTOF_1/analytic_20240530_/zip/20240530_012_autoQC03dda.d.zip NA p35318/Proteomics/TIMSTOF_1/analytic_20240530_/zip/20240530_012_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p35318/Proteomics/TIMSTOF_1/analytic_20240530_/zip/20240530_012_autoQC03dda.d.zip p35314/Proteomics/TIMSTOF_1/analytic_20240529/zip/20240529_006_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-01 12:29:20.019001 | timeMax: 2024-05-31 12:29:20.019664 | timeDiff: 5184000.00066304 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-01 10:29:20.019 | timeMax: 2024-05-31 10:29:20.02 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 83 rows containing missing values (`geom_point()`). Warning: Removed 28 rows containing missing values (`geom_line()`). nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 166 rows containing missing values (`geom_point()`). Warning: Removed 28 rows containing missing values (`geom_line()`). NA p35155/Proteomics/QEXACTIVE_1/analytic_20240514/20240514_C35155_001r_autoQC01.raw NA p35326/Proteomics/QEXACTIVE_1/analytic_20240529/20240529_C35326_010_autoQC01.raw p35326/Proteomics/QEXACTIVE_1/analytic_20240529/20240529_C35326_010_autoQC01.raw p35326/Proteomics/QEXACTIVE_1/analytic_20240529/20240529_C35326_010_autoQC01.raw NA p35326/Proteomics/QEXACTIVE_1/analytic_20240529/20240529_C35326_010_autoQC01.raw p35326/Proteomics/QEXACTIVE_1/analytic_20240529/20240529_C35326_001_autoQC01.raw p35244/Proteomics/QEXACTIVE_1/analytic_20240529/20240529_C35244_001_autoQC01.raw NA p35326/Proteomics/QEXACTIVE_1/analytic_20240529/20240529_C35326_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-01 13:56:45.776979 | timeMax: 2024-05-31 13:56:45.777547 | timeDiff: 5184000.00056767 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-01 11:56:45.777 | timeMax: 2024-05-31 11:56:45.778 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... vals$rawrr: TRUE NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-02 11:50:43.859492 | timeMax: 2024-06-01 11:50:43.860063 | timeDiff: 5184000.00057054 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-02 09:50:43.859 | timeMax: 2024-06-01 09:50:43.86 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-25 11:52:55.067281 | timeMax: 2024-06-01 11:52:55.067325 | timeDiff: 604800.000043631 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-02 11:56:01.75827 | timeMax: 2024-06-01 11:56:01.75886 | timeDiff: 5184000.00059032 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-02 09:56:01.758 | timeMax: 2024-06-01 09:56:01.759 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... NA vals$rawrr: TRUE p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-02 13:53:35.569079 | timeMax: 2024-06-01 13:53:35.569653 | timeDiff: 5184000.00057435 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-02 11:53:35.569 | timeMax: 2024-06-01 11:53:35.57 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-02 21:39:13.735296 | timeMax: 2024-06-01 21:39:13.735868 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-02 19:39:13.735 | timeMax: 2024-06-01 19:39:13.736 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 07:53:53.378399 | timeMax: 2024-06-03 07:53:53.378968 | timeDiff: 5184000.00056958 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-04 05:53:53.378 | timeMax: 2024-06-03 05:53:53.379 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p35243/Proteomics/EXPLORIS_2/analytic_20240531/20240531_C35243_001_autoQC01.raw nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_001_autoQC01.raw p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_005_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_005_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 08:57:17.253238 | timeMax: 2024-06-03 08:57:17.254223 | timeDiff: 5184000.00098491 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-04 06:57:17.253 | timeMax: 2024-06-03 06:57:17.254 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 624 using 'ggh4x' package ... NA p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw NA p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw NA p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA NA p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw NA plotClick: p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 08:59:56.993239 | timeMax: 2024-06-03 08:59:56.994206 | timeDiff: 5184000.00096703 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-04 06:59:56.993 | timeMax: 2024-06-03 06:59:56.994 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). p35202/Proteomics/LUMOS_2/analytic_20240530/20240530_C35202_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35202/Proteomics/LUMOS_2/analytic_20240530/20240530_C35202_007_autoQC01.raw nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 624 using 'ggh4x' package ... p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw NA plotClick: p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw plotClick: p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw plotClick: NA p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw plotClick: p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 09:35:27.14063 | timeMax: 2024-06-03 09:35:27.141212 | timeDiff: 5184000.00058293 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-04 07:35:27.14063 | timeMax: 2024-06-03 07:35:27.14121 | timeDiff: 5184000.00058031 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-04 07:35:27.141 | timeMax: 2024-06-03 07:35:27.141 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 09:35:37.528104 | timeMax: 2024-06-03 09:35:37.528682 | timeDiff: 5184000.00057888 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-04 07:35:37.528 | timeMax: 2024-06-03 07:35:37.529 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values (`geom_point()`). NA p3189/Proteomics/EXPLORIS_1/kbende_20240531/20240531_028_autoQC03dda.raw nrow dataFiltered(): 325 using 'ggh4x' package ... p3189/Proteomics/EXPLORIS_1/kbende_20240531/20240531_028_autoQC03dda.raw NA nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... p35318/Proteomics/TIMSTOF_1/analytic_20240530_/zip/20240530_012_autoQC03dda.d.zip NA p35206/Proteomics/TIMSTOF_1/baselgia_20240530_/zip/20240530_011_autoQC03dia_60SPD.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 12:46:02.453955 | timeMax: 2024-06-03 12:46:02.456192 | timeDiff: 5184000.00223684 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-04-04 10:46:02.454 | timeMax: 2024-06-03 10:46:02.456 | timeDiff: 5184000.00200009 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 15:17:36.405604 | timeMax: 2024-06-03 15:17:36.406178 | timeDiff: 5184000.00057459 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-04 13:17:36.4056 | timeMax: 2024-06-03 13:17:36.40618 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-04 13:17:36.406 | timeMax: 2024-06-03 13:17:36.406 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_004_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_005_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_004_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_004_autoQC03dda.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_069_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240506/20240506_003_autoQC03dda.raw p34994/Proteomics/EXPLORIS_1/roschi_20240515_SQ_analysis/20240515_069_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_004_autoQC03dda.raw nrow dataFiltered(): 234 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_005_autoQC03dia.raw NA p35226/Proteomics/EXPLORIS_1/analytic_20240529/20240529_C35226_017_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_004_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_004_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_006_autoQC03dda.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_113_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 18:42:57.944366 | timeMax: 2024-06-03 18:42:57.94495 | timeDiff: 5184000.00058436 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-04 16:42:57.944 | timeMax: 2024-06-03 16:42:57.945 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 01:05:30.438953 | timeMax: 2024-06-04 01:05:30.439537 | timeDiff: 5184000.00058341 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-04 23:05:30.43895 | timeMax: 2024-06-03 23:05:30.43954 | timeDiff: 5184000.00059009 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-04 23:05:30.439 | timeMax: 2024-06-03 23:05:30.44 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... NA nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 07:41:59.264833 | timeMax: 2024-06-04 07:41:59.265414 | timeDiff: 5184000.00058103 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-05 05:41:59.265 | timeMax: 2024-06-04 05:41:59.265 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 08:07:57.469843 | timeMax: 2024-06-04 08:07:57.470438 | timeDiff: 5184000.00059462 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-04-05 06:07:57.47 | timeMax: 2024-06-04 06:07:57.47 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 08:38:29.097127 | timeMax: 2024-06-04 08:38:29.09771 | timeDiff: 5184000.00058317 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-05 06:38:29.09713 | timeMax: 2024-06-04 06:38:29.09771 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-05 06:38:29.097 | timeMax: 2024-06-04 06:38:29.098 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_006_autoQC03dda_IW1.raw p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_007_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_004_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_007_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_004_autoQC03dda.raw NA NA nFacets: 3 nrow dataFiltered(): 429 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 306 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240603/20240603_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240603/20240603_002_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240603/20240603_002_autoQC03dda.raw plotClick: p3000/Proteomics/LUMOS_2/analytics_20240603/20240603_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240603/20240603_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 09:04:59.956026 | timeMax: 2024-06-04 09:04:59.956607 | timeDiff: 5184000.00058079 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-05 07:04:59.956 | timeMax: 2024-06-04 07:04:59.957 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_18_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_18_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_18_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_17_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_16_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_15_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 09:22:54.61497 | timeMax: 2024-06-04 09:22:54.616063 | timeDiff: 5184000.00109339 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-05 07:22:54.615 | timeMax: 2024-06-04 07:22:54.616 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_003_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_007_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 16:20:04.06534 | timeMax: 2024-06-04 16:20:04.06591 | timeDiff: 5184000.00057006 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-05 14:20:04.065 | timeMax: 2024-06-04 14:20:04.066 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_19_autoQC03dda.raw NA Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 270391 autoQC01 module APEX long nrow: 732 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA nrow dataFiltered(): 162 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 20:55:30.237559 | timeMax: 2024-06-04 20:55:30.238619 | timeDiff: 5184000.00105977 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-05 18:55:30.238 | timeMax: 2024-06-04 18:55:30.239 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... vals$rawDiag: TRUE NA vals$rawDiag: FALSE vals$rawDiag: TRUE plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. plotClick: p3000/Proteomics/TIMSTOFFLEX_1/antdit_20240430/zip/20240430_002_autoQC03dda.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 08:06:39.185543 | timeMax: 2024-06-05 08:06:39.186123 | timeDiff: 5184000.00058007 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 06:06:39.18554 | timeMax: 2024-06-05 06:06:39.18612 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 06:06:39.186 | timeMax: 2024-06-05 06:06:39.186 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 08:39:48.744312 | timeMax: 2024-06-05 08:39:48.744884 | timeDiff: 5184000.00057149 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-06 06:39:48.744 | timeMax: 2024-06-05 06:39:48.745 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p35226/Proteomics/EXPLORIS_1/analytic_20240605/20240603_C35226_006_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_006_autoQC03dda_IW1.raw NA nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 10:56:56.355409 | timeMax: 2024-06-05 10:56:56.355981 | timeDiff: 5184000.00057149 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-06 08:56:56.355 | timeMax: 2024-06-05 08:56:56.356 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw nFacets: 3 nrow dataFiltered(): 429 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 14:23:05.294198 | timeMax: 2024-06-05 14:23:05.294783 | timeDiff: 5184000.00058532 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-04-06 12:23:05.294 | timeMax: 2024-06-05 12:23:05.295 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 14:44:22.784499 | timeMax: 2024-06-05 14:44:22.786069 | timeDiff: 5184000.00157022 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-06 12:44:22.784 | timeMax: 2024-06-05 12:44:22.786 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... p35226/Proteomics/EXPLORIS_1/analytic_20240605/20240603_C35226_006_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 14:49:08.362093 | timeMax: 2024-06-05 14:49:08.362935 | timeDiff: 5184000.00084186 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-06 12:49:08.362 | timeMax: 2024-06-05 12:49:08.363 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 14:49:37.048873 | timeMax: 2024-06-05 14:49:37.050474 | timeDiff: 5184000.0016017 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp p35366/Proteomics/LUMOS_2/analytic_20240603/20240603_C35366_028_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35366/Proteomics/LUMOS_2/analytic_20240603/20240603_C35366_028_autoQC01.raw nFacets: 4 p35366/Proteomics/LUMOS_2/analytic_20240603/20240603_C35366_028_autoQC01.raw input timeRange: 7776000 | timeMin: 2024-04-06 12:49:37.049 | timeMax: 2024-06-05 12:49:37.05 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE plotClick: nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 plotClick: NA vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... p35366/Proteomics/LUMOS_2/analytic_20240603/20240603_C35366_028_autoQC01.raw plotClick: p35226/Proteomics/EXPLORIS_1/analytic_20240605/20240603_C35226_006_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35226/Proteomics/EXPLORIS_1/analytic_20240605/20240603_C35226_006_autoQC03dda.raw NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 429 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240603/20240603_002_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240603/20240603_002_autoQC03dda.raw NA plotClick: p3000/Proteomics/LUMOS_2/analytics_20240603/20240603_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240603/20240603_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240603/20240603_003_autoQC03dia.raw NA NA p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_007_autoQC03dda.raw NA p35226/Proteomics/EXPLORIS_1/analytic_20240605/20240603_C35226_006_autoQC03dda.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 14:52:37.464541 | timeMax: 2024-06-05 14:52:37.465938 | timeDiff: 5184000.00139642 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-06 12:52:37.46454 | timeMax: 2024-06-05 12:52:37.46594 | timeDiff: 5184000.00139999 nFacets: 1 nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 12:52:37.465 | timeMax: 2024-06-05 12:52:37.466 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//NA input timeRange: 15552000 | timeMin: 2024-04-06 12:52:37.465 | timeMax: 2024-06-05 14:54:04.596314 | timeDiff: 5184087.13131452 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-06 12:52:37.465 | timeMax: 2024-06-05 12:54:04.596 | timeDiff: 5184087.13100004 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-06 12:54:06.643 | timeMax: 2024-06-05 12:54:04.596 | timeDiff: 5183997.95300007 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-02-16 12:54:06.643 | timeMax: 2024-06-05 12:54:04.596 | timeDiff: 9503997.95300007 nFacets: 4 nrow dataFiltered(): 1404 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-02-16 12:54:29.202 | timeMax: 2024-06-05 12:54:04.596 | timeDiff: 9503975.39400005 nFacets: 4 nrow dataFiltered(): 1404 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-22 12:54:29.202 | timeMax: 2024-06-05 12:54:04.596 | timeDiff: 11663975.3940001 nFacets: 4 nrow dataFiltered(): 1976 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2023-12-08 12:54:39.50285 | timeMax: 2024-06-05 12:54:04.596 | timeDiff: 15551965.0931499 nFacets: 4 nrow dataFiltered(): 2652 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2023-12-08 14:54:44.958071 | timeMax: 2024-06-05 12:54:04.596 | timeDiff: 15548359.6379294 nFacets: 4 nrow dataFiltered(): 2652 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2023-12-08 13:54:44.958 | timeMax: 2024-06-05 12:54:04.596 | timeDiff: 15548359.638 p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw nFacets: 3 nrow dataFiltered(): 1352 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 666 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 15:05:59.555893 | timeMax: 2024-06-05 15:05:59.556692 | timeDiff: 5184000.00079942 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 13:05:59.55589 | timeMax: 2024-06-05 13:05:59.55669 | timeDiff: 5184000.00080013 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 13:05:59.556 | timeMax: 2024-06-05 13:05:59.557 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240605/20240605_001_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240605/20240605_001_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 15:16:01.853011 | timeMax: 2024-06-05 15:16:01.853831 | timeDiff: 5184000.00082064 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 13:16:01.85301 | timeMax: 2024-06-05 13:16:01.85383 | timeDiff: 5184000.00082016 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 13:16:01.853 | timeMax: 2024-06-05 13:16:01.854 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 15:28:37.958555 | timeMax: 2024-06-05 15:28:37.959343 | timeDiff: 5184000.00078869 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 13:28:37.95855 | timeMax: 2024-06-05 13:28:37.95934 | timeDiff: 5184000.00079012 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 13:28:37.959 | timeMax: 2024-06-05 13:28:37.959 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-27 13:28:41.715 | timeMax: 2024-06-05 13:28:37.959 | timeDiff: 777596.244000196 nFacets: 1 nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 91 using 'ggh4x' package ... nrow dataFiltered(): 91 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240605/20240605_001_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 16:12:11.455074 | timeMax: 2024-06-05 16:12:11.458193 | timeDiff: 5184000.00311875 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 14:12:11.45507 | timeMax: 2024-06-05 14:12:11.45819 | timeDiff: 5184000.00311995 nFacets: 1 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 14:12:11.455 | timeMax: 2024-06-05 14:12:11.458 | timeDiff: 5184000.00300002 nFacets: 1 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240605/20240605_003_autoQC03dda_neg.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240605/20240605_001_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240605/20240605_003_autoQC03dda_neg.raw nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_004_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_003_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 16:22:22.698493 | timeMax: 2024-06-05 16:22:22.699069 | timeDiff: 5184000.00057554 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 14:22:22.69849 | timeMax: 2024-06-05 14:22:22.69907 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 14:22:22.698 | timeMax: 2024-06-05 14:22:22.699 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240605/20240605_003_autoQC03dda_neg.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240605/20240605_001_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240605/20240605_003_autoQC03dda_neg.raw nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 16:28:01.935183 | timeMax: 2024-06-05 16:28:01.935987 | timeDiff: 5184000.00080466 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 14:28:01.93518 | timeMax: 2024-06-05 14:28:01.93599 | timeDiff: 5184000.00081015 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 14:28:01.935 | timeMax: 2024-06-05 14:28:01.936 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 16:29:19.150713 | timeMax: 2024-06-05 16:29:19.152187 | timeDiff: 5184000.00147462 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-06 14:29:19.151 | timeMax: 2024-06-05 14:29:19.152 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 16:40:34.182341 | timeMax: 2024-06-05 16:40:34.182987 | timeDiff: 5184000.00064611 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-06 14:40:34.182 | timeMax: 2024-06-05 14:40:34.183 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 16:46:22.754877 | timeMax: 2024-06-05 16:46:22.75549 | timeDiff: 5184000.00061297 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-06 14:46:22.755 | timeMax: 2024-06-05 14:46:22.755 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 21:21:52.951774 | timeMax: 2024-06-05 21:21:52.952551 | timeDiff: 5184000.00077629 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-06 19:21:52.952 | timeMax: 2024-06-05 19:21:52.953 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1008 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_19_autoQC03dda.raw Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 270534 autoQC01 module APEX long nrow: 756 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 NA vals$rawrr: TRUE NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_22_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_22_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_22_autoQC01.raw Plotting chromatograms ... Read 22032 items nrow dataFiltered(): 1008 using 'ggh4x' package ... nrow dataFiltered(): 1008 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw plotClick: NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw plotClick: Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-06 21:29:36.715791 | timeMax: 2024-06-05 21:29:36.716366 | timeDiff: 5184000.00057435 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1008 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 19:29:36.716 | timeMax: 2024-06-05 19:29:36.716 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1008 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw plotClick: Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-07 08:49:26.443828 | timeMax: 2024-06-06 08:49:26.444409 | timeDiff: 5184000.00058103 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-07 06:49:26.444 | timeMax: 2024-06-06 06:49:26.444 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_004_autoQC03dda.raw NA input timeRange: 7776000 | timeMin: 2024-05-23 06:49:28.466 | timeMax: 2024-06-06 06:49:26.444 | timeDiff: 1209597.97799993 nFacets: 1 nrow dataFiltered(): 130 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_006_autoQC03dda_IW1.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-07 09:22:12.59181 | timeMax: 2024-06-06 09:22:12.592391 | timeDiff: 5184000.00058126 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-07 07:22:12.59181 | timeMax: 2024-06-06 07:22:12.59239 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-07 07:22:12.592 | timeMax: 2024-06-06 07:22:12.592 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_003_autoQC03dia.raw plotClick: plotClick: nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw plotClick: plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw plotClick: plotClick: p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-07 10:25:41.311474 | timeMax: 2024-06-06 10:25:41.312076 | timeDiff: 5184000.00060153 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 84 rows containing missing values (`geom_point()`). Warning: Removed 29 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-07 08:25:41.311 | timeMax: 2024-06-06 08:25:41.312 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 84 rows containing missing values (`geom_point()`). Warning: Removed 29 rows containing missing values (`geom_line()`). nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 168 rows containing missing values (`geom_point()`). Warning: Removed 29 rows containing missing values (`geom_line()`). p35195/Proteomics/QEXACTIVE_1/analytic_20240515/20240515_C35195_001_autoQC01.raw p35195/Proteomics/QEXACTIVE_1/analytic_20240515/20240515_C35195_006_autoQC01.raw NA p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_001_autoQC01.raw p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_008_autoQC01.raw NA p35283/Proteomics/QEXACTIVE_1/analytic_20240527/20240527_C35283_002_autoQC01.raw p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240410_C34851_004_autoQC01.raw NA p35283/Proteomics/QEXACTIVE_1/analytic_20240527/20240527_C35283_002_autoQC01.raw p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-07 10:33:51.83392 | timeMax: 2024-06-06 10:33:51.834504 | timeDiff: 5184000.00058436 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-07 08:33:51.834 | timeMax: 2024-06-06 08:33:51.835 | timeDiff: 5184000.00099993 nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-07 13:59:32.556507 | timeMax: 2024-06-06 13:59:32.557083 | timeDiff: 5184000.00057578 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-07 11:59:32.557 | timeMax: 2024-06-06 11:59:32.557 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw p2135/Proteomics/LUMOS_1/dlesli_20210819/20210527_030_autoQC4L.raw p26433/Proteomics/LUMOS_1/baytekbarbini_20231127/20231127_034_autoQC4L.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-07 22:28:29.025563 | timeMax: 2024-06-06 22:28:29.026155 | timeDiff: 5184000.00059152 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-07 20:28:29.026 | timeMax: 2024-06-06 20:28:29.026 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_29_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_28_autoQC01.raw NA vals$rawrr: TRUE p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_29_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_29_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_29_autoQC01.raw Plotting chromatograms ... Read 22032 items p35189/Proteomics/LUMOS_1/analytic_20240529/20240529_C35189_001_autoQC01.raw NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_30_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_30_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_23_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-08 08:24:23.969049 | timeMax: 2024-06-07 08:24:23.969759 | timeDiff: 5184000.00071049 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-08 06:24:23.96905 | timeMax: 2024-06-07 06:24:23.96976 | timeDiff: 5184000.00071001 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-08 06:24:23.969 | timeMax: 2024-06-07 06:24:23.97 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_31_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_31_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_31_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-09 07:52:06.634358 | timeMax: 2024-06-08 07:52:06.634948 | timeDiff: 5184000.00058961 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-09 05:52:06.634 | timeMax: 2024-06-08 05:52:06.635 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240607_32_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240607_32_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-03 05:53:27.614 | timeMax: 2024-06-08 05:52:06.635 | timeDiff: 5702319.02099991 nFacets: 4 nrow dataFiltered(): 884 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-10 05:54:01.34289 | timeMax: 2024-06-08 05:52:06.635 | timeDiff: 7775885.2921102 nFacets: 4 nrow dataFiltered(): 1352 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-10 07:54:06.981328 | timeMax: 2024-06-08 05:52:06.635 | timeDiff: 7772279.65367174 nFacets: 4 nrow dataFiltered(): 1352 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-10 06:54:06.981 | timeMax: 2024-06-08 05:52:06.635 | timeDiff: 7772279.65400004 nFacets: 4 nrow dataFiltered(): 1352 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-09 08:10:03.08813 | timeMax: 2024-06-08 08:10:03.088706 | timeDiff: 5184000.00057626 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-09 06:10:03.088 | timeMax: 2024-06-08 06:10:03.089 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 31536000 | timeMin: 2024-04-09 06:10:03.088 | timeMax: 2024-06-08 08:11:18.800481 | timeDiff: 5184075.71248126 nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-04-09 06:10:03.088 | timeMax: 2024-06-08 06:11:18.8 | timeDiff: 5184075.71199989 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-12-05 06:11:27.076 | timeMax: 2024-06-08 06:11:18.8 | timeDiff: 16070391.724 nFacets: 4 nrow dataFiltered(): 2808 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-07 06:11:27.076 | timeMax: 2024-06-08 06:11:18.8 | timeDiff: 21167991.724 nFacets: 4 nrow dataFiltered(): 4056 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 666 using 'ggh4x' package ... NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw plotClick: NA Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... p31573/Proteomics/LUMOS_1/milope_20240202/20240202_028_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p31573/Proteomics/LUMOS_1/milope_20240202/20240202_028_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p31573/Proteomics/LUMOS_1/milope_20240202/20240202_028_autoQC03dia.raw Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw Plotting chromatograms ... Plotting chromatograms ... p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_012_autoQC4L.raw vals$rawrr: TRUE p27367/Proteomics/LUMOS_1/zhouj_20231114/20231114_029_autoQC4L.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_012_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_012_autoQC4L.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_012_autoQC4L.raw Plotting chromatograms ... Read 22032 items NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_012_autoQC4L.raw plotClick: plotClick: plotClick: plotClick: plotClick: Plotting chromatograms ... Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 270809 autoQC01 module APEX long nrow: 4836 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 104 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 6448 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-10 15:06:31.121605 | timeMax: 2024-06-09 15:06:31.122179 | timeDiff: 5184000.00057387 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-10 13:06:31.122 | timeMax: 2024-06-09 13:06:31.122 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-11 08:54:06.958016 | timeMax: 2024-06-10 08:54:06.958597 | timeDiff: 5184000.0005815 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-11 06:54:06.958 | timeMax: 2024-06-10 06:54:06.959 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-12 12:44:04.898874 | timeMax: 2024-06-11 12:44:04.899456 | timeDiff: 5184000.00058174 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 84 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-12 10:44:04.899 | timeMax: 2024-06-11 10:44:04.899 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 84 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_003_autoQC01.raw NA p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_003_autoQC01.raw p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_001_autoQC01.raw NA nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 168 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_001_autoQC01.raw p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_003_autoQC01.raw p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_001_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 312 using 'ggh4x' package ... p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_004_autoQC03dda.raw NA p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_004_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-12 13:59:58.032293 | timeMax: 2024-06-11 13:59:58.03288 | timeDiff: 5184000.00058627 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 85 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-12 11:59:58.032 | timeMax: 2024-06-11 11:59:58.033 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 85 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p35338/Proteomics/QEXACTIVE_1/analytic_20240531/20240531_C35338_004_autoQC01.raw NA p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_002_autoQC01.raw p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_003_autoQC01.raw p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_003_autoQC01.raw p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_002_autoQC01.raw p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_002_autoQC01.raw p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_002_autoQC01.raw NA nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 170 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_003_autoQC01.raw NA p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_002_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-12 14:45:03.259271 | timeMax: 2024-06-11 14:45:03.259855 | timeDiff: 5184000.00058341 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-12 12:45:03.259 | timeMax: 2024-06-11 12:45:03.26 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_28_autoQC01.raw p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_008_autoQC01.raw p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_001_autoQC01.raw p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_008_autoQC01.raw NA Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 270985 autoQC01 module APEX long nrow: 1140 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 12 rows containing missing values (`geom_point()`). NA p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_008_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-12 16:33:22.102822 | timeMax: 2024-06-11 16:33:22.103403 | timeDiff: 5184000.00058126 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-12 14:33:22.103 | timeMax: 2024-06-11 14:33:22.103 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... NA nrow dataFiltered(): 1056 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_02_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_02_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240422_02_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2024-04-12 14:33:22.103 | timeMax: 2024-05-18 14:33:23.053 | timeDiff: 3110400.95000005 nFacets: 4 nrow dataFiltered(): 528 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-12 14:33:22.103 | timeMax: 2024-06-11 14:35:16.53758 | timeDiff: 5184114.43458009 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-12 14:33:22.103 | timeMax: 2024-06-11 14:35:16.538 | timeDiff: 5184114.43500018 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-12 19:44:24.268418 | timeMax: 2024-06-11 19:44:24.269196 | timeDiff: 5184000.00077844 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-12 17:44:24.268 | timeMax: 2024-06-11 17:44:24.269 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_30_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_30_autoQC03dda.raw NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_31_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_31_autoQC03dia.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_31_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_31_autoQC03dia.raw Plotting chromatograms ... Plotting chromatograms ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240607_31_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240607_31_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240607_31_autoQC03dia.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-13 09:24:27.680212 | timeMax: 2024-06-12 09:24:27.680966 | timeDiff: 5184000.00075412 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1072 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-13 07:24:27.68 | timeMax: 2024-06-12 07:24:27.681 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-13 09:57:56.404277 | timeMax: 2024-06-12 09:57:56.404856 | timeDiff: 5184000.00057888 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-13 07:57:56.404 | timeMax: 2024-06-12 07:57:56.405 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-13 07:57:56.404 | timeMax: 2024-06-12 09:58:41.205112 | timeDiff: 5184044.80111146 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-13 07:57:56.404 | timeMax: 2024-06-12 07:58:41.205 | timeDiff: 5184044.80099988 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-13 07:58:42.476 | timeMax: 2024-06-12 07:58:41.205 | timeDiff: 13046398.7289999 nFacets: 1 nrow dataFiltered(): 637 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1170 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-13 11:16:43.874161 | timeMax: 2024-06-12 11:16:43.874754 | timeDiff: 5184000.00059319 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-13 09:16:43.874 | timeMax: 2024-06-12 09:16:43.875 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240611_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-05 12:09:24.80873 | timeMax: 2024-06-12 12:09:24.808753 | timeDiff: 604800.000023127 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-13 15:14:57.71777 | timeMax: 2024-06-12 15:14:57.718352 | timeDiff: 5184000.0005827 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-13 13:14:57.718 | timeMax: 2024-06-12 13:14:57.718 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). nFacets: 5 nrow dataFiltered(): 1900 using 'ggh4x' package ... Warning: Removed 25 rows containing missing values (`geom_point()`). nFacets: 6 nrow dataFiltered(): 2280 using 'ggh4x' package ... Warning: Removed 30 rows containing missing values (`geom_point()`). nFacets: 7 nrow dataFiltered(): 2660 using 'ggh4x' package ... Warning: Removed 37 rows containing missing values (`geom_point()`). nFacets: 8 nrow dataFiltered(): 3040 using 'ggh4x' package ... Warning: Removed 40 rows containing missing values (`geom_point()`). nFacets: 9 nrow dataFiltered(): 3420 using 'ggh4x' package ... Warning: Removed 45 rows containing missing values (`geom_point()`). nFacets: 10 nrow dataFiltered(): 3800 using 'ggh4x' package ... Warning: Removed 49 rows containing missing values (`geom_point()`). nFacets: 11 nrow dataFiltered(): 4180 using 'ggh4x' package ... Warning: Removed 58 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... p35226/Proteomics/EXPLORIS_1/analytic_20240605/20240605_C35226_017_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_005_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-14 10:07:05.191195 | timeMax: 2024-06-13 10:07:05.191784 | timeDiff: 5184000.00058889 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 86 rows containing missing values (`geom_point()`). Warning: Removed 17 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-14 08:07:05.191 | timeMax: 2024-06-13 08:07:05.192 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 86 rows containing missing values (`geom_point()`). Warning: Removed 17 rows containing missing values (`geom_line()`). NA p35479/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35479_008_autoQC01.raw p35479/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35479_001_autoQC01.raw p35479/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35479_001_autoQC01.raw p35387/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35387_004_autoQC01.raw p35387/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35387_001_autoQC01.raw NA p35387/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35387_001_autoQC01.raw p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_002_autoQC01.raw p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_005_autoQC01_new.raw p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_002_autoQC01.raw p35401/Proteomics/QEXACTIVE_1/analytic_20240607/20240607_C35401_001_autoQC01.raw p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_005_autoQC01_new.raw p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_004_autoQC01.raw p35437/Proteomics/QEXACTIVE_1/analytic_20240611/20240611_C35437_002_autoQC01.raw NA p35387/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35387_001_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 338 using 'ggh4x' package ... NA p35479/Proteomics/QEXACTIVE_1/analytic_20240612/20240612_C35479_009_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-06 14:24:58.252472 | timeMax: 2024-06-13 14:24:58.252517 | timeDiff: 604800.000044346 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-14 14:29:54.725025 | timeMax: 2024-06-13 14:29:54.7256 | timeDiff: 5184000.0005753 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-14 12:29:54.72502 | timeMax: 2024-06-13 12:29:54.7256 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-14 12:29:54.725 | timeMax: 2024-06-13 12:29:54.726 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-15 08:47:48.063297 | timeMax: 2024-06-14 08:47:48.063876 | timeDiff: 5184000.00057912 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1680 using 'ggh4x' package ... Warning: Removed 87 rows containing missing values (`geom_point()`). Warning: Removed 17 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-15 06:47:48.063 | timeMax: 2024-06-14 06:47:48.064 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1680 using 'ggh4x' package ... Warning: Removed 87 rows containing missing values (`geom_point()`). Warning: Removed 17 rows containing missing values (`geom_line()`). nrow dataFiltered(): 1680 using 'ggh4x' package ... Warning: Removed 174 rows containing missing values (`geom_point()`). Warning: Removed 17 rows containing missing values (`geom_line()`). p35306/Proteomics/QEXACTIVE_1/analytic_20240613/20240613_C35306_010_autoQC01.raw p35306/Proteomics/QEXACTIVE_1/analytic_20240613/20240613_C35306_010_autoQC01.raw p35306/Proteomics/QEXACTIVE_1/analytic_20240613/20240613_C35306_010_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 351 using 'ggh4x' package ... p35306/Proteomics/QEXACTIVE_1/analytic_20240613/20240613_C35306_011_autoQC03dda.raw nrow dataFiltered(): 351 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-15 12:28:51.050492 | timeMax: 2024-06-14 12:28:51.051094 | timeDiff: 5184000.00060225 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-15 10:28:51.05 | timeMax: 2024-06-14 10:28:51.051 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 1088 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_30_autoQC03dda.raw NA NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw plotClick: NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_31_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240607_31_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-15 16:29:04.890381 | timeMax: 2024-06-14 16:29:04.890969 | timeDiff: 5184000.00058818 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-15 14:29:04.89 | timeMax: 2024-06-14 14:29:04.891 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1088 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw NA NA nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 0 Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 4 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... p3000/Proteomics/FUSION_2/chiawei_20240514/20240514_004_autoQC03dda.raw NA p35281/Proteomics/FUSION_2/cmirov_20240531/20240531_007_autoQC03dda.raw nFacets: 4 nrow dataFiltered(): 832 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-16 09:28:07.459613 | timeMax: 2024-06-15 09:28:07.460201 | timeDiff: 5184000.00058746 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-16 07:28:07.46 | timeMax: 2024-06-15 07:28:07.46 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-08 09:29:36.213435 | timeMax: 2024-06-15 09:29:36.213481 | timeDiff: 604800.000046253 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-16 09:29:50.423946 | timeMax: 2024-06-15 09:29:50.424542 | timeDiff: 5184000.00059652 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-16 07:29:50.424 | timeMax: 2024-06-15 07:29:50.425 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). Warning: Removed 2 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... vals$rawrr: TRUE NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-16 21:46:53.682233 | timeMax: 2024-06-15 21:46:53.682811 | timeDiff: 5184000.00057817 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1152 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-16 19:46:53.682 | timeMax: 2024-06-15 19:46:53.683 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 07:51:04.099535 | timeMax: 2024-06-17 07:51:04.100111 | timeDiff: 5184000.00057673 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-18 05:51:04.1 | timeMax: 2024-06-17 05:51:04.1 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... NA p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_020_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_020_autoQC01.raw NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_020_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 07:57:39.403538 | timeMax: 2024-06-17 07:57:39.404114 | timeDiff: 5184000.00057554 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-18 05:57:39.404 | timeMax: 2024-06-17 05:57:39.404 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p35421/Proteomics/EXPLORIS_2/analytic_20240612/20240610_C35421_013_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_020_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_020_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 09:29:45.945872 | timeMax: 2024-06-17 09:29:45.946459 | timeDiff: 5184000.00058722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-18 07:29:45.946 | timeMax: 2024-06-17 07:29:45.946 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 09:48:38.371634 | timeMax: 2024-06-17 09:48:38.372224 | timeDiff: 5184000.00059009 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-18 07:48:38.372 | timeMax: 2024-06-17 07:48:38.372 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 09:50:05.475059 | timeMax: 2024-06-17 09:50:05.475725 | timeDiff: 5184000.00066662 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-18 07:50:05.475 | timeMax: 2024-06-17 07:50:05.476 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). NA p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240612_010_autoQC01.raw p35387/Proteomics/EXPLORIS_1/analytic_20240613/20240613_C35387_001_autoQC01.raw p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240612_010_autoQC01.raw NA p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240612_010_autoQC01.raw p35387/Proteomics/EXPLORIS_1/analytic_20240613/20240613_C35387_001_autoQC01.raw p35387/Proteomics/EXPLORIS_1/analytic_20240613/20240613_C35387_001_autoQC01.raw p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240612_001_autoQC01.raw p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240612_001_autoQC01.raw NA p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240612_010_autoQC01.raw p35387/Proteomics/EXPLORIS_1/analytic_20240613/20240613_C35387_001_autoQC01.raw p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240612_010_autoQC01.raw NA p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240612_010_autoQC01.raw p35387/Proteomics/EXPLORIS_1/analytic_20240613/20240613_C35387_001_autoQC01.raw p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240612_010_autoQC01.raw p25334/Proteomics/EXPLORIS_1/dlesli_20240611_DLP247/20240612_010_autoQC01.raw p35387/Proteomics/EXPLORIS_1/analytic_20240613/20240613_C35387_001_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... p35387/Proteomics/EXPLORIS_1/analytic_20240613/20240613_C35387_016_autoQC03dda.raw p35226/Proteomics/EXPLORIS_1/analytic_20240611/20240611_C35226_017_autoQC03dda.raw NA p35226/Proteomics/EXPLORIS_1/analytic_20240611/20240612_C35226_003_autoQC03dda.raw p35226/Proteomics/EXPLORIS_1/analytic_20240611/20240611_C35226_017_autoQC03dda.raw p35387/Proteomics/EXPLORIS_1/analytic_20240613/20240613_C35387_016_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 10:05:04.173523 | timeMax: 2024-06-17 10:05:04.17411 | timeDiff: 5184000.00058722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-18 08:05:04.174 | timeMax: 2024-06-17 08:05:04.174 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_020_autoQC01.raw NA p35526/Proteomics/LUMOS_1/roschi_20240614_test_andrew/20240614_013_autoQC01.raw p35526/Proteomics/LUMOS_1/roschi_20240614_test_andrew/20240614_007_autoQC01.raw NA p35526/Proteomics/LUMOS_1/roschi_20240614_test_andrew/20240614_013_autoQC01.raw NA p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_008_autoQC01.raw NA p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_008_autoQC01.raw p35526/Proteomics/LUMOS_1/roschi_20240614_test_andrew/20240614_007_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_37_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_32_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_32_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_32_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_37_autoQC01.raw NA p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_020_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_30_autoQC03dda.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_021_autoQC03dia.raw p35526/Proteomics/LUMOS_1/roschi_20240614_test_andrew/20240614_021_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_31_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 10:12:12.226758 | timeMax: 2024-06-17 10:12:12.227746 | timeDiff: 5184000.00098753 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-18 08:12:12.227 | timeMax: 2024-06-17 08:12:12.228 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 11:13:07.762165 | timeMax: 2024-06-17 11:13:07.762786 | timeDiff: 5184000.00062108 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-18 09:13:07.762 | timeMax: 2024-06-17 09:13:07.763 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 1040 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 3 nrow dataFiltered(): 520 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... NA p35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_007_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_007_autoQC03dia.raw nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 11:50:10.396611 | timeMax: 2024-06-17 11:50:10.397216 | timeDiff: 5184000.00060463 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-18 09:50:10.397 | timeMax: 2024-06-17 09:50:10.397 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 12:14:09.352441 | timeMax: 2024-06-17 12:14:09.353143 | timeDiff: 5184000.0007019 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1152 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-18 10:14:09.352 | timeMax: 2024-06-17 10:14:09.353 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-18 12:33:02.917451 | timeMax: 2024-06-17 12:33:02.918448 | timeDiff: 5184000.00099754 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-18 10:33:02.917 | timeMax: 2024-06-17 10:33:02.918 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-19 10:13:14.616392 | timeMax: 2024-06-18 10:13:14.616969 | timeDiff: 5184000.00057697 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-19 12:42:53.879832 | timeMax: 2024-06-18 12:42:53.880412 | timeDiff: 5184000.00058007 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-19 10:42:53.88 | timeMax: 2024-06-18 10:42:53.88 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 271612 autoQC01 module APEX long nrow: 900 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 input timeRange: 7776000 | timeMin: 2024-04-19 10:43:18.022 | timeMax: 2024-06-18 10:42:53.88 | timeDiff: 5183975.85800004 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-04 10:44:20.308 | timeMax: 2024-06-18 10:42:53.88 | timeDiff: 3887913.57200003 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-21 10:44:26.101 | timeMax: 2024-06-18 10:42:53.88 | timeDiff: 2419107.77900004 nFacets: 4 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-15 10:44:30.138 | timeMax: 2024-06-18 10:42:53.88 | timeDiff: 2937503.7420001 nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240607_30_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//NA vals$rawrr: TRUE Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw NA plotClick: p35261/Proteomics/LUMOS_1/analytic_20240522/20240522_C35261_009_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw NA p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw Plotting chromatograms ... Read 22032 items p35261/Proteomics/LUMOS_1/analytic_20240522/20240522_C35261_009_autoQC03dda.raw NA p35261/Proteomics/LUMOS_1/analytic_20240522/20240522_C35261_009_autoQC03dda.raw p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw plotClick: NA p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw plotClick: p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw Plotting chromatograms ... Read 22032 items plotClick: plotClick: fn has changed to /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw Plotting chromatograms ... Read 22032 items p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawrr-autoQC03-plotTools 1: runApp p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_032_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-19 14:23:22.76593 | timeMax: 2024-06-18 14:23:22.766529 | timeDiff: 5184000.00059819 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-19 12:23:22.766 | timeMax: 2024-06-18 12:23:22.767 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-19 14:29:36.030246 | timeMax: 2024-06-18 14:29:36.030825 | timeDiff: 5184000.00057864 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-19 12:29:36.03 | timeMax: 2024-06-18 12:29:36.031 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-24 12:29:36.689 | timeMax: 2024-06-18 12:29:36.031 | timeDiff: 4751999.34200001 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-03 13:21:22.408 | timeMax: 2024-06-18 12:29:36.031 | timeDiff: 3971293.62299991 nFacets: 4 nrow dataFiltered(): 864 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-07 13:21:22.408 | timeMax: 2024-06-18 12:29:36.031 | timeDiff: 3625693.62299991 nFacets: 4 nrow dataFiltered(): 816 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 117 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 117 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-07 13:21:37.018 | timeMax: 2024-06-18 12:29:36.031 | timeDiff: 3625679.01300001 nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-25 13:22:11.507 | timeMax: 2024-06-18 12:29:36.031 | timeDiff: 4662444.52399993 nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-19 15:29:01.562301 | timeMax: 2024-06-18 15:29:01.562893 | timeDiff: 5184000.00059199 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-19 13:29:01.5623 | timeMax: 2024-06-18 13:29:01.56289 | timeDiff: 5184000.00058985 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-19 13:29:01.562 | timeMax: 2024-06-18 13:29:01.563 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 08:54:25.324501 | timeMax: 2024-06-19 08:54:25.325223 | timeDiff: 5184000.00072217 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-20 06:54:25.325 | timeMax: 2024-06-19 06:54:25.325 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 09:43:22.73955 | timeMax: 2024-06-19 09:43:22.740216 | timeDiff: 5184000.0006659 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 07:43:22.74 | timeMax: 2024-06-19 07:43:22.74 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 12:08:43.544917 | timeMax: 2024-06-19 12:08:43.545496 | timeDiff: 5184000.00057864 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 10:08:43.545 | timeMax: 2024-06-19 10:08:43.546 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 12:10:25.322117 | timeMax: 2024-06-19 12:10:25.322699 | timeDiff: 5184000.00058174 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 10:10:25.322 | timeMax: 2024-06-19 10:10:25.323 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 12:11:10.99329 | timeMax: 2024-06-19 12:11:10.993876 | timeDiff: 5184000.00058627 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 10:11:10.993 | timeMax: 2024-06-19 10:11:10.994 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 12:11:53.051328 | timeMax: 2024-06-19 12:11:53.051911 | timeDiff: 5184000.00058341 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 10:11:53.051 | timeMax: 2024-06-19 10:11:53.052 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 12:13:33.976155 | timeMax: 2024-06-19 12:13:33.97674 | timeDiff: 5184000.00058484 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 10:13:33.976 | timeMax: 2024-06-19 10:13:33.977 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 12:13:57.326994 | timeMax: 2024-06-19 12:13:57.327666 | timeDiff: 5184000.00067186 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 10:13:57.327 | timeMax: 2024-06-19 10:13:57.328 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 12:14:44.398563 | timeMax: 2024-06-19 12:14:44.399148 | timeDiff: 5184000.00058484 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 10:14:44.399 | timeMax: 2024-06-19 10:14:44.399 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 12:15:04.003688 | timeMax: 2024-06-19 12:15:04.004277 | timeDiff: 5184000.00058889 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 10:15:04.004 | timeMax: 2024-06-19 10:15:04.004 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 12:16:09.711965 | timeMax: 2024-06-19 12:16:09.712538 | timeDiff: 5184000.00057387 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-20 10:16:09.712 | timeMax: 2024-06-19 10:16:09.713 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases vals$rawDiag: TRUE NA plotClick: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw NA plotChargeState reading index for 20240619_001_autoQC01.raw... p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_001_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240616_C35387_001_autoQC01.raw... NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw Reading raw file: /srv/www/htdocs//p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240616_C35387_015_autoQC01.raw... NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw plotClick: NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw plotClick: NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw plotClick: NA plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases reading index for 20240619_001_autoQC01.raw... p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_001_autoQC01.raw p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw Reading raw file: /srv/www/htdocs//p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240616_C35387_015_autoQC01.raw... NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw plotClick: p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_015_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases reading index for 20240619_001_autoQC01.raw... p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 13:22:47.211105 | timeMax: 2024-06-19 13:22:47.211711 | timeDiff: 5184000.0006063 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-20 11:22:47.211 | timeMax: 2024-06-19 11:22:47.212 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 13:26:44.423603 | timeMax: 2024-06-19 13:26:44.424261 | timeDiff: 5184000.00065875 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-20 11:26:44.424 | timeMax: 2024-06-19 11:26:44.424 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 13:27:01.110581 | timeMax: 2024-06-19 13:27:01.11125 | timeDiff: 5184000.00066948 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-20 11:27:01.111 | timeMax: 2024-06-19 11:27:01.111 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 13:27:31.696965 | timeMax: 2024-06-19 13:27:31.697581 | timeDiff: 5184000.00061584 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-20 11:27:31.697 | timeMax: 2024-06-19 11:27:31.698 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 13:27:49.000875 | timeMax: 2024-06-19 13:27:49.001471 | timeDiff: 5184000.00059628 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-20 11:27:49.001 | timeMax: 2024-06-19 11:27:49.001 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 13:29:03.467962 | timeMax: 2024-06-19 13:29:03.468576 | timeDiff: 5184000.00061417 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-20 11:29:03.468 | timeMax: 2024-06-19 11:29:03.469 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 13:29:41.999292 | timeMax: 2024-06-19 13:29:41.999899 | timeDiff: 5184000.00060701 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-20 11:29:41.999 | timeMax: 2024-06-19 11:29:42 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 13:29:50.997072 | timeMax: 2024-06-19 13:29:50.997666 | timeDiff: 5184000.00059462 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-20 11:29:50.997 | timeMax: 2024-06-19 11:29:50.998 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 13:30:54.65158 | timeMax: 2024-06-19 13:30:54.65222 | timeDiff: 5184000.00064063 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-20 11:30:54.652 | timeMax: 2024-06-19 11:30:54.652 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 3 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 13:31:15.585602 | timeMax: 2024-06-19 13:31:15.586237 | timeDiff: 5184000.00063491 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 11:31:15.586 | timeMax: 2024-06-19 11:31:15.586 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01_20240619124000.raw vals$rawDiag: TRUE vals$rawrr: TRUE plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01_20240619124000.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_001_autoQC01_20240619124000.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240619_001_autoQC01_20240619124000.raw... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-20 22:14:32.157009 | timeMax: 2024-06-19 22:14:32.157591 | timeDiff: 5184000.0005815 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-20 20:14:32.157 | timeMax: 2024-06-19 20:14:32.158 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_006_autoQC01.raw vals$rawrr: TRUE NA vals$rawDiag: TRUE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_006_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_006_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240619_006_autoQC01.raw... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-21 07:12:54.626233 | timeMax: 2024-06-20 07:12:54.626805 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-21 05:12:54.626 | timeMax: 2024-06-20 05:12:54.627 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). NA vals$rawrr: TRUE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_012_autoQC01.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_012_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-21 08:22:28.989191 | timeMax: 2024-06-20 08:22:28.989773 | timeDiff: 5184000.00058198 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-21 06:22:28.989 | timeMax: 2024-06-20 06:22:28.99 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p35526/Proteomics/LUMOS_2/roschi_20240619_DIA_w4_vs_normal/20240619_001_autoQC01.raw p35504/Proteomics/LUMOS_2/analytic_20240618/20240618_C35504_008_autoQC01.raw p35526/Proteomics/LUMOS_2/roschi_20240619_DIA_w4_vs_normal/20240619_001_autoQC01.raw p35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_006_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... NA p35526/Proteomics/LUMOS_1/analytic_20240619/20240619_C35526_014_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-21 08:45:00.74698 | timeMax: 2024-06-20 08:45:00.747561 | timeDiff: 5184000.00058079 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-21 06:45:00.74698 | timeMax: 2024-06-20 06:45:00.74756 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-21 06:45:00.747 | timeMax: 2024-06-20 06:45:00.748 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 494 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... NA p35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_008_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_008_autoQC03dda.raw plotClick: plotClick: NA p35504/Proteomics/LUMOS_2/analytic_20240618/20240618_C35504_009_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytic_20240617/20240613_002_autoQC03dia.raw NA p35135/Proteomics/LUMOS_2/analytic_20240612/20240612_C35135_009_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35135/Proteomics/LUMOS_2/analytic_20240612/20240612_C35135_009_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-21 09:29:15.716873 | timeMax: 2024-06-20 09:29:15.717467 | timeDiff: 5184000.00059462 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-21 07:29:15.717 | timeMax: 2024-06-20 07:29:15.717 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_012_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_012_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_012_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_012_autoQC01.raw Plotting chromatograms ... Read 22032 items vals$rawDiag: TRUE NA plotChargeState reading index for 20240619_012_autoQC01.raw... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-21 11:33:19.387499 | timeMax: 2024-06-20 11:33:19.388095 | timeDiff: 5184000.00059605 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-21 09:33:19.388 | timeMax: 2024-06-20 09:33:19.388 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 23 rows containing non-finite values (`stat_smooth()`). Warning: Removed 23 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 1 rows containing non-finite values (`stat_smooth()`). Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 77 rows containing non-finite values (`stat_smooth()`). Warning: Removed 77 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 1 rows containing non-finite values (`stat_smooth()`). Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 77 rows containing non-finite values (`stat_smooth()`). Warning: Removed 77 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 1 rows containing non-finite values (`stat_smooth()`). Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 1 rows containing non-finite values (`stat_smooth()`). Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-21 11:40:32.116706 | timeMax: 2024-06-20 11:40:32.117383 | timeDiff: 5184000.00067687 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-21 09:40:32.117 | timeMax: 2024-06-20 09:40:32.117 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_2/analytic_20240610/20240610_002_autoQC01.raw NA p35421/Proteomics/EXPLORIS_2/analytic_20240612/20240610_C35421_001_autoQC01.raw nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 1092 using 'ggh4x' package ... NA p35502/Proteomics/FUSION_2/fabiac_20240618/20240618_005_autoQC03dda.raw NA p35350/Proteomics/FUSION_2/loesle_20240612/20240612_007_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35350/Proteomics/FUSION_2/loesle_20240612/20240612_007_autoQC03dia.raw plotClick: NA p35281/Proteomics/FUSION_2/cmirov_20240529/20240529_007_autoQC03dia.raw NA p35281/Proteomics/FUSION_2/cmirov_20240529/20240529_007_autoQC03dia.raw NA p35279/Proteomics/FUSION_2/aeberle_20240524/20240524_005_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-21 12:42:29.254463 | timeMax: 2024-06-20 12:42:29.255048 | timeDiff: 5184000.00058508 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-21 10:42:29.254 | timeMax: 2024-06-20 10:42:29.255 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-21 12:43:52.061728 | timeMax: 2024-06-20 12:43:52.062372 | timeDiff: 5184000.00064445 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-21 10:43:52.062 | timeMax: 2024-06-20 10:43:52.062 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p35526/Proteomics/LUMOS_1/analytic_20240619/20240619_C35526_015_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_20_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_006_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_006_autoQC03dia.raw nFacets: 3 nrow dataFiltered(): 494 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... NA p35504/Proteomics/LUMOS_2/analytic_20240618/20240618_C35504_009_autoQC03dia.raw p3000/Proteomics/LUMOS_2/analytic_20240617/20240613_002_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytic_20240617/20240613_002_autoQC03dia.raw p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240523_after_Lu_PM/20240523_003_autoQC03dia.raw NA p34944/Proteomics/LUMOS_2/analytic_20240423/20240423_C34944_016_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p34944/Proteomics/LUMOS_2/analytic_20240423/20240423_C34944_016_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-21 16:48:22.487238 | timeMax: 2024-06-20 16:48:22.487818 | timeDiff: 5184000.0005796 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-21 14:48:22.487 | timeMax: 2024-06-20 14:48:22.488 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-21 21:18:03.265856 | timeMax: 2024-06-20 21:18:03.266432 | timeDiff: 5184000.00057673 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-21 19:18:03.266 | timeMax: 2024-06-20 19:18:03.266 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-22 00:17:38.881536 | timeMax: 2024-06-21 00:17:38.882119 | timeDiff: 5184000.00058246 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-04-21 22:17:38.882 | timeMax: 2024-06-20 22:17:38.882 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-22 08:00:10.391726 | timeMax: 2024-06-21 08:00:10.3923 | timeDiff: 5184000.00057411 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 77 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-22 06:00:10.392 | timeMax: 2024-06-21 06:00:10.392 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 77 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 154 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240617/20240617_004_autoQC03dda.raw NA nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-22 12:06:26.781317 | timeMax: 2024-06-21 12:06:26.782016 | timeDiff: 5184000.00069928 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 78 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-22 10:06:26.781 | timeMax: 2024-06-21 10:06:26.782 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 78 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). NA ./p35567/Proteomics/QEXACTIVE_1/analytic_20240620/20240620_C35567_004_autoQC01.raw ./p35567/Proteomics/QEXACTIVE_1/analytic_20240620/20240620_C35567_004_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-22 12:06:56.946444 | timeMax: 2024-06-21 12:06:56.947023 | timeDiff: 5184000.00057888 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 78 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-04-22 10:06:56.946 | timeMax: 2024-06-21 10:06:56.947 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 78 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-22 14:22:50.723013 | timeMax: 2024-06-21 14:22:50.723683 | timeDiff: 5184000.00066948 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-04-22 12:22:50.723 | timeMax: 2024-06-21 12:22:50.724 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw NA p35526/Proteomics/LUMOS_1/analytic_20240619/20240619_C35526_014_autoQC01.raw NA p35526/Proteomics/LUMOS_1/analytic_20240619/20240619_C35526_014_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_29_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_32_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_28_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_32_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_32_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_32_autoQC01.raw Plotting chromatograms ... Read 22032 items nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw NA Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 272107 autoQC01 module APEX long nrow: 1260 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 16 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 364 using 'ggh4x' package ... p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_005_autoQC03dda.raw ./p35567/Proteomics/QEXACTIVE_1/analytic_20240620/20240620_C35567_004_autoQC01.raw ./p35567/Proteomics/QEXACTIVE_1/analytic_20240620/20240620_C35567_001_autoQC01.raw ./p35567/Proteomics/QEXACTIVE_1/analytic_20240620/20240620_C35567_004_autoQC01.raw nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 156 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-22 16:41:47.343153 | timeMax: 2024-06-21 16:41:47.343813 | timeDiff: 5184000.0006597 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-22 14:41:47.343 | timeMax: 2024-06-21 14:41:47.344 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-22 16:41:53.116065 | timeMax: 2024-06-21 16:41:53.11665 | timeDiff: 5184000.00058508 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-22 16:41:56.371568 | timeMax: 2024-06-21 16:41:56.372175 | timeDiff: 5184000.00060701 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp p35272/Proteomics/LUMOS_1/analytic_20240617/20240617_C35272_006_autoQC01.raw nFacets: 4 p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-22 14:41:53.116 | timeMax: 2024-06-21 14:41:53.117 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-22 14:41:56.372 | timeMax: 2024-06-21 14:41:56.372 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nrow dataFiltered(): 1248 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_21_autoQC01.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_016_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240607_29_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-23 17:59:27.812398 | timeMax: 2024-06-22 17:59:27.813018 | timeDiff: 5184000.00062013 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-23 15:59:27.812 | timeMax: 2024-06-22 15:59:27.813 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-16 07:47:15.986841 | timeMax: 2024-06-23 07:47:15.986891 | timeDiff: 604800.000049353 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-24 07:47:43.34688 | timeMax: 2024-06-23 07:47:43.34746 | timeDiff: 5184000.00057936 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-24 05:47:43.347 | timeMax: 2024-06-23 05:47:43.347 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-03-29 05:47:44.109 | timeMax: 2024-06-23 05:47:43.347 | timeDiff: 7430399.23799992 nFacets: 4 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-25 13:00:52.196434 | timeMax: 2024-06-24 13:00:52.197014 | timeDiff: 5184000.00057983 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-25 11:00:52.19643 | timeMax: 2024-06-24 11:00:52.19701 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-25 11:00:52.196 | timeMax: 2024-06-24 11:00:52.197 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_013_autoQC03dda_rep.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-25 14:40:37.808045 | timeMax: 2024-06-24 14:40:37.80863 | timeDiff: 5184000.00058508 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 1092 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-25 12:40:37.80805 | timeMax: 2024-06-24 12:40:37.80863 | timeDiff: 5184000.00057983 nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-25 12:40:37.808 | timeMax: 2024-06-24 12:40:37.809 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p35472/Proteomics/FUSION_2/chiawei_20240621/20240621_007_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35472/Proteomics/FUSION_2/chiawei_20240621/20240621_007_autoQC03dia.raw NA nFacets: 3 nrow dataFiltered(): 442 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-26 09:49:53.710415 | timeMax: 2024-06-25 09:49:53.710992 | timeDiff: 5184000.00057673 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-26 07:49:53.71 | timeMax: 2024-06-25 07:49:53.711 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... NA input timeRange: 15552000 | timeMin: 2024-04-26 07:49:53.71 | timeMax: 2024-06-25 09:50:28.431066 | timeDiff: 5184034.721066 nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-26 07:49:53.71 | timeMax: 2024-06-25 07:50:28.431 | timeDiff: 5184034.72099996 nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-14 07:50:30.023 | timeMax: 2024-06-25 07:50:28.431 | timeDiff: 14083198.408 nFacets: 4 nrow dataFiltered(): 2444 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 558 using 'ggh4x' package ... nrow dataFiltered(): 558 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 2288 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 2444 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 558 using 'ggh4x' package ... nrow dataFiltered(): 558 using 'ggh4x' package ... nrow dataFiltered(): 558 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-26 09:53:53.862463 | timeMax: 2024-06-25 09:53:53.863063 | timeDiff: 5184000.00060034 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-26 07:53:53.862 | timeMax: 2024-06-25 07:53:53.863 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-26 15:51:44.010967 | timeMax: 2024-06-25 15:51:44.011563 | timeDiff: 5184000.00059605 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-26 13:51:44.011 | timeMax: 2024-06-25 13:51:44.012 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... vals$rawrr: TRUE NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw NA Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw NA p35272/Proteomics/LUMOS_1/analytic_20240617/20240617_C35272_011_autoQC01.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw NA p35526/Proteomics/LUMOS_1/analytic_20240619/20240619_C35526_014_autoQC01.raw NA p35526/Proteomics/LUMOS_1/analytic_20240619/20240619_C35526_014_autoQC01.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-27 14:32:12.779971 | timeMax: 2024-06-26 14:32:12.780555 | timeDiff: 5184000.00058341 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-27 12:32:12.78 | timeMax: 2024-06-26 12:32:12.781 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 26 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 416 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-27 16:48:09.088068 | timeMax: 2024-06-26 16:48:09.088658 | timeDiff: 5184000.00059032 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-27 14:48:09.088 | timeMax: 2024-06-26 14:48:09.089 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 07:36:12.292993 | timeMax: 2024-06-27 07:36:12.293564 | timeDiff: 5184000.00057077 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-28 05:36:12.293 | timeMax: 2024-06-27 05:36:12.294 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 09:18:30.735967 | timeMax: 2024-06-27 09:18:30.73655 | timeDiff: 5184000.0005827 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-28 07:18:30.736 | timeMax: 2024-06-27 07:18:30.737 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... vals$rawrr: TRUE nrow dataFiltered(): 414 using 'ggh4x' package ... NA p35494/Proteomics/EXPLORIS_2/analytic_20240619/20240619_C35494_034_autoQC03dia.raw NA nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 09:19:29.21773 | timeMax: 2024-06-27 09:19:29.218318 | timeDiff: 5184000.00058794 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-28 07:19:29.218 | timeMax: 2024-06-27 07:19:29.218 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... vals$rawrr: TRUE nrow dataFiltered(): 270 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 09:30:34.894829 | timeMax: 2024-06-27 09:30:34.895581 | timeDiff: 5184000.00075245 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-28 07:30:34.895 | timeMax: 2024-06-27 07:30:34.896 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_01_autoQC01.raw NA reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA Plotting chromatograms ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 10:36:19.166678 | timeMax: 2024-06-27 10:36:19.167434 | timeDiff: 5184000.00075603 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-28 08:36:19.167 | timeMax: 2024-06-27 08:36:19.167 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... NA vals$rawrr: TRUE p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_01_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_01_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_01_autoQC01.raw Plotting chromatograms ... Read 22032 items plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw plotClick: p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_01_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_01_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA vals$rawrr: TRUE p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 10:51:14.450225 | timeMax: 2024-06-27 10:51:14.45081 | timeDiff: 5184000.00058508 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-28 08:51:14.45 | timeMax: 2024-06-27 08:51:14.451 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_008_autoQC03dia.raw nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw nrow dataFiltered(): 780 using 'ggh4x' package ... vals$rawrr: TRUE nrow dataFiltered(): 780 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 10:58:07.361579 | timeMax: 2024-06-27 10:58:07.362177 | timeDiff: 5184000.00059819 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-28 08:58:07.362 | timeMax: 2024-06-27 08:58:07.362 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-20 11:01:10.350176 | timeMax: 2024-06-27 11:01:10.350199 | timeDiff: 604800.000022888 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 12:40:50.716803 | timeMax: 2024-06-27 12:40:50.717403 | timeDiff: 5184000.00060058 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-28 10:40:50.717 | timeMax: 2024-06-27 10:40:50.717 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_030_autoQC01.raw NA p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_030_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_030_autoQC01.raw NA nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_031_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_031_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_031_autoQC03dda.raw NA p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_012_autoQC03dia.raw NA nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 08:58:32.371 | timeMax: 2024-06-27 08:58:07.362 | timeDiff: 7084774.99099994 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 558 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-31 10:56:08.183 | timeMax: 2024-06-27 08:58:07.362 | timeDiff: 7596119.1789999 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 612 using 'ggh4x' package ... p34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_008_autoQC03dia.raw NA p35139/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35139_021_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_005_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_005_autoQC03dia.raw NA p35494/Proteomics/EXPLORIS_2/analytic_20240619/20240619_C35494_034_autoQC03dia.raw nrow dataFiltered(): 612 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_004_autoQC03dia.raw NA p35494/Proteomics/EXPLORIS_2/analytic_20240619/20240619_C35494_034_autoQC03dia.raw p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_008_autoQC03dia.raw NA p35494/Proteomics/EXPLORIS_2/analytic_20240619/20240619_C35494_034_autoQC03dia.raw p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_014_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240402/20240402_004_autoQC03dia.raw input timeRange: 7776000 | timeMin: 2024-03-29 10:56:13.60852 | timeMax: 2024-06-27 08:58:07.362 | timeDiff: 7768913.75347996 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-29 13:52:36.278563 | timeMax: 2024-06-27 08:58:07.362 | timeDiff: 7761931.0834372 nrow dataFiltered(): 630 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-29 12:52:36.279 | timeMax: 2024-06-27 08:58:07.362 | timeDiff: 7761931.08299994 p34474/Proteomics/EXPLORIS_2/analytic_20240328/20240328_C34474_035_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 13:58:16.434465 | timeMax: 2024-06-27 13:58:16.435045 | timeDiff: 5184000.00058055 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-28 11:58:16.434 | timeMax: 2024-06-27 11:58:16.435 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1552 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_023_autoQC01.raw p3000/Proteomics/LUMOS_2/pgehrig_20240624_2PCA/20240624_030_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 14:29:53.510121 | timeMax: 2024-06-27 14:29:53.510709 | timeDiff: 5184000.0005877 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-28 12:29:53.51 | timeMax: 2024-06-27 12:29:53.511 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 16:55:45.342599 | timeMax: 2024-06-27 16:55:45.343193 | timeDiff: 5184000.0005939 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 17:19:48.452939 | timeMax: 2024-06-27 17:19:48.453834 | timeDiff: 5184000.00089455 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-28 15:19:48.453 | timeMax: 2024-06-27 15:19:48.454 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 17:28:44.335057 | timeMax: 2024-06-27 17:28:44.33564 | timeDiff: 5184000.00058293 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-28 15:28:44.33506 | timeMax: 2024-06-27 15:28:44.33564 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-28 15:28:44.335 | timeMax: 2024-06-27 15:28:44.336 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... NA nFacets: 3 nrow dataFiltered(): 442 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 324 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 17:30:25.054961 | timeMax: 2024-06-27 17:30:25.05555 | timeDiff: 5184000.00058913 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-28 15:30:25.055 | timeMax: 2024-06-27 15:30:25.056 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 324 using 'ggh4x' package ... NA nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 17:31:37.555729 | timeMax: 2024-06-27 17:31:37.556317 | timeDiff: 5184000.00058794 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 1092 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-28 15:31:37.55573 | timeMax: 2024-06-27 15:31:37.55632 | timeDiff: 5184000.00059009 nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-28 15:31:37.556 | timeMax: 2024-06-27 15:31:37.556 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... NA nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... NA input timeRange: 31536000 | timeMin: 2024-04-28 15:28:44.335 | timeMax: 2024-06-27 17:32:02.622419 | timeDiff: 5184198.28741908 nFacets: 3 nrow dataFiltered(): 442 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 324 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-04-28 15:28:44.335 | timeMax: 2024-06-27 15:32:02.622 | timeDiff: 5184198.28699994 nFacets: 3 nrow dataFiltered(): 442 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-26 15:32:02.638 | timeMax: 2024-06-27 15:32:02.622 | timeDiff: 18489599.984 nFacets: 3 nrow dataFiltered(): 1703 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 918 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-03-08 15:32:04.19 | timeMax: 2024-06-27 15:32:02.622 | timeDiff: 9590398.43199992 nFacets: 3 nrow dataFiltered(): 650 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-07-24 15:32:07.481 | timeMax: 2024-06-27 15:32:02.622 | timeDiff: 29289595.141 nFacets: 3 nrow dataFiltered(): 2951 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1008 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-08-07 15:32:07.481 | timeMax: 2024-06-27 15:32:02.622 | timeDiff: 28079995.141 nFacets: 3 nrow dataFiltered(): 2821 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1008 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-28 15:30:25.055 | timeMax: 2024-06-27 17:32:40.56952 | timeDiff: 5184135.51451993 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-28 15:30:25.055 | timeMax: 2024-06-27 15:32:40.57 | timeDiff: 5184135.51499987 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-04-28 15:30:25.055 | timeMax: 2024-06-27 17:32:43.16832 | timeDiff: 5184138.11331964 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-04-28 15:30:25.055 | timeMax: 2024-06-27 15:32:43.168 | timeDiff: 5184138.11299992 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-01-01 15:32:43.175 | timeMax: 2024-06-27 15:32:43.168 | timeDiff: 15379199.993 nFacets: 4 nrow dataFiltered(): 2652 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-08-09 15:32:46.406 | timeMax: 2024-06-27 15:32:43.168 | timeDiff: 27907196.7620001 nFacets: 4 nrow dataFiltered(): 4940 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 792 using 'ggh4x' package ... nrow dataFiltered(): 792 using 'ggh4x' package ... nrow dataFiltered(): 792 using 'ggh4x' package ... nrow dataFiltered(): 1008 using 'ggh4x' package ... nrow dataFiltered(): 1008 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-08-10 15:32:13.206 | timeMax: 2024-06-27 15:32:02.622 | timeDiff: 27820789.4159999 nFacets: 3 nrow dataFiltered(): 2821 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1008 using 'ggh4x' package ... nrow dataFiltered(): 1008 using 'ggh4x' package ... nrow dataFiltered(): 1008 using 'ggh4x' package ... p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_002_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_002_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_2/leonardoschwarz_20231116/20231116_002_S580219_K562_incl_iRT_autoQC03dia.raw NA nrow dataFiltered(): 1008 using 'ggh4x' package ... nrow dataFiltered(): 1008 using 'ggh4x' package ... nrow dataFiltered(): 1008 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-04-28 15:31:37.556 | timeMax: 2024-06-27 17:34:11.928604 | timeDiff: 5184154.37260389 nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-04-28 15:31:37.556 | timeMax: 2024-06-27 15:34:11.929 | timeDiff: 5184154.37299991 nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-08-13 15:34:13.645 | timeMax: 2024-06-27 15:34:11.929 | timeDiff: 27561598.2839999 nFacets: 5 nrow dataFiltered(): 5746 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... nrow dataFiltered(): 954 using 'ggh4x' package ... nrow dataFiltered(): 954 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw vals$rawrr: TRUE plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... Plotting chromatograms ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240614_30_autoQC03dda.raw Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... NA Plotting chromatograms ... nrow dataFiltered(): 792 using 'ggh4x' package ... p31573/Proteomics/LUMOS_1/yichichen_20240315/20240315_025_autoQC03dda.raw nrow dataFiltered(): 1008 using 'ggh4x' package ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-28 22:42:38.062893 | timeMax: 2024-06-27 22:42:38.06351 | timeDiff: 5184000.00061774 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-28 20:42:38.063 | timeMax: 2024-06-27 20:42:38.064 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-21 08:48:48.772724 | timeMax: 2024-06-28 08:48:48.772761 | timeDiff: 604800.000037432 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-29 09:02:26.793472 | timeMax: 2024-06-28 09:02:26.794059 | timeDiff: 5184000.00058675 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-29 07:02:26.793 | timeMax: 2024-06-28 07:02:26.794 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-29 09:50:18.490442 | timeMax: 2024-06-28 09:50:18.491039 | timeDiff: 5184000.00059652 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-29 07:50:18.49 | timeMax: 2024-06-28 07:50:18.491 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_006_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_006_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_001_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_006_autoQC01.raw nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_003_autoQC03dda_newBatch.raw NA p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_002_autoQC03dda_oldBatch.raw p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_003_autoQC03dda_newBatch.raw NA p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_003_autoQC03dda_newBatch.raw NA NA p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_005_autoQC03dia_newBatch.raw nrow dataFiltered(): 360 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_005_autoQC03dia_newBatch.raw p3000/Proteomics/LUMOS_2/analytics_20240627_auoQC03_old_vs_newBatch/20240627_004_autoQC03dia_oldBatch.raw nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 1144 using 'ggh4x' package ... p35555/Proteomics/FUSION_2/mmasek_20240626_test_cyto_mem_prep_inlcusion/20240626_008_autoQC03dda.raw NA p35555/Proteomics/FUSION_2/mmasek_20240627_test_cyto_mem_prep_inlcusion/20240627_008_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35555/Proteomics/FUSION_2/mmasek_20240627_test_cyto_mem_prep_inlcusion/20240627_008_autoQC03dda.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p35555/Proteomics/FUSION_2/mmasek_20240627_test_cyto_mem_prep_inlcusion/20240627_008_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA Plotting chromatograms ... NA p35555/Proteomics/FUSION_2/mmasek_20240627_test_cyto_mem_prep_inlcusion/20240627_009_autoQC03dia.raw NA p35555/Proteomics/FUSION_2/mmasek_20240627_test_cyto_mem_prep_inlcusion/20240627_009_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35555/Proteomics/FUSION_2/mmasek_20240627_test_cyto_mem_prep_inlcusion/20240627_009_autoQC03dia.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p35555/Proteomics/FUSION_2/mmasek_20240627_test_cyto_mem_prep_inlcusion/20240627_009_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-29 12:46:24.837182 | timeMax: 2024-06-28 12:46:24.837784 | timeDiff: 5184000.00060201 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-29 10:46:24.837 | timeMax: 2024-06-28 10:46:24.838 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-29 15:24:42.110828 | timeMax: 2024-06-28 15:24:42.111414 | timeDiff: 5184000.00058627 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-29 13:24:42.111 | timeMax: 2024-06-28 13:24:42.111 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-23 15:06:17.11662 | timeMax: 2024-06-30 15:06:17.116662 | timeDiff: 604800.000041962 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 08:34:11.929248 | timeMax: 2024-07-01 08:34:11.929826 | timeDiff: 5184000.00057745 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file 3: agg could not write to the given file 4: agg could not write to the given file 5: agg could not write to the given file