Listening on http://127.0.0.1:33209 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 08:56:23.153317 | timeMax: 2024-07-01 08:56:23.153901 | timeDiff: 5184000.00058389 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-02 06:56:23.153 | timeMax: 2024-07-01 06:56:23.154 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 09:04:35.071992 | timeMax: 2024-07-01 09:04:35.072569 | timeDiff: 5184000.00057769 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-02 07:04:35.072 | timeMax: 2024-07-01 07:04:35.073 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... NA p35532/Proteomics/EXPLORIS_2/analytic_20240628/20240628_C35532_005_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... NA p25334/Proteomics/EXPLORIS_1/dlesli_20240627_DLP249/20240627_024_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240624/20240624_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 09:07:58.246624 | timeMax: 2024-07-01 09:07:58.24722 | timeDiff: 5184000.00059581 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 22 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-02 07:07:58.247 | timeMax: 2024-07-01 07:07:58.247 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 22 rows containing missing values or values outside the scale range (`geom_point()`). Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 272756 autoQC01 module APEX long nrow: 1068 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 46 rows containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 10:07:06.619521 | timeMax: 2024-07-01 10:07:06.6201 | timeDiff: 5184000.0005784 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 10:22:00.740714 | timeMax: 2024-07-01 10:22:00.741296 | timeDiff: 5184000.00058174 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-02 08:22:00.741 | timeMax: 2024-07-01 08:22:00.741 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 11:52:48.422313 | timeMax: 2024-07-01 11:52:48.422905 | timeDiff: 5184000.00059128 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-05-02 09:52:48.422 | timeMax: 2024-07-01 09:52:48.423 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 1144 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-04-02 09:53:23.19218 | timeMax: 2024-07-01 09:52:48.423 | timeDiff: 7775965.23082018 nFacets: 4 nrow dataFiltered(): 1404 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-02 12:53:50.943743 | timeMax: 2024-07-01 09:52:48.423 | timeDiff: 7772337.47925687 nFacets: 4 nrow dataFiltered(): 1404 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-02 10:53:50.944 | timeMax: 2024-07-01 09:52:48.423 | timeDiff: 7772337.47900009 nFacets: 4 nrow dataFiltered(): 1404 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-02 10:53:50.944 | timeMax: 2024-07-01 11:53:59.724852 | timeDiff: 7772408.78085208 nFacets: 4 nrow dataFiltered(): 1404 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-02 10:53:50.944 | timeMax: 2024-07-01 09:53:59.725 | timeDiff: 7772408.7809999 nFacets: 4 nrow dataFiltered(): 1404 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-03 09:54:01.15965 | timeMax: 2024-07-01 09:53:59.725 | timeDiff: 15551998.5653501 nFacets: 4 nrow dataFiltered(): 2652 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-03 11:54:39.798678 | timeMax: 2024-07-01 09:53:59.725 | timeDiff: 15548359.926322 nFacets: 4 nrow dataFiltered(): 2652 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-03 10:54:39.799 | timeMax: 2024-07-01 09:53:59.725 | timeDiff: 15548359.9259999 nFacets: 4 nrow dataFiltered(): 2704 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 612 using 'ggh4x' package ... Warning in observe() : timeDiff is higher than timeRange Warning in observe() : timeDiff is higher than timeRange input timeRange: 15552000 | timeMin: 2024-03-11 09:54:42.07 | timeMax: 2024-07-01 09:53:59.725 | timeDiff: 9676757.65499997 nFacets: 4 nrow dataFiltered(): 1612 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-24 11:59:30.290838 | timeMax: 2024-07-01 11:59:30.290885 | timeDiff: 604800.000047207 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 11:59:37.400966 | timeMax: 2024-07-01 11:59:37.401561 | timeDiff: 5184000.00059509 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-02 09:59:37.401 | timeMax: 2024-07-01 09:59:37.402 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 11:59:46.318479 | timeMax: 2024-07-01 11:59:46.319088 | timeDiff: 5184000.00060844 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-02 09:59:46.318 | timeMax: 2024-07-01 09:59:46.319 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-24 12:02:02.802926 | timeMax: 2024-07-01 12:02:02.802973 | timeDiff: 604800.000047207 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 12:32:32.570752 | timeMax: 2024-07-01 12:32:32.571375 | timeDiff: 5184000.0006237 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-02 10:32:32.571 | timeMax: 2024-07-01 10:32:32.571 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 14:32:25.648759 | timeMax: 2024-07-01 14:32:25.6494 | timeDiff: 5184000.00064087 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-05-02 12:32:25.64876 | timeMax: 2024-07-01 12:32:25.6494 | timeDiff: 5184000.00063992 autoQC01 module APEX wide nrow: 272789 autoQC01 module APEX long nrow: 972 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 182 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-02 12:32:25.649 | timeMax: 2024-07-01 12:32:25.649 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 182 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-02 15:59:32.473145 | timeMax: 2024-07-01 15:59:32.473724 | timeDiff: 5184000.00057983 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-02 13:59:32.473 | timeMax: 2024-07-01 13:59:32.474 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 08:37:44.873066 | timeMax: 2024-07-02 08:37:44.873628 | timeDiff: 5184000.00056243 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-03 06:37:44.873 | timeMax: 2024-07-02 06:37:44.874 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_003_autoQC03dda_newBatch.raw NA nrow dataFiltered(): 520 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 08:38:37.916333 | timeMax: 2024-07-02 08:38:37.916906 | timeDiff: 5184000.0005734 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-03 06:38:37.916 | timeMax: 2024-07-02 06:38:37.917 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA nrow dataFiltered(): 520 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA nrow dataFiltered(): 396 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_005_autoQC03dia_newBatch.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_005_autoQC03dia_newBatch.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_003_autoQC03dda_newBatch.raw p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_003_autoQC03dda_newBatch.raw p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_004_autoQC03dia_oldBatch.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_004_autoQC03dia_oldBatch.raw NA p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_004_autoQC03dia_oldBatch.raw plotClick: NA p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240701_005_autoQC03dia_newBatch.raw NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 08:51:18.530495 | timeMax: 2024-07-02 08:51:18.531072 | timeDiff: 5184000.00057697 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-03 06:51:18.53 | timeMax: 2024-07-02 06:51:18.531 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA p35061/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35061_001_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 11:45:00.186887 | timeMax: 2024-07-02 11:45:00.188065 | timeDiff: 5184000.00117779 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-03 09:45:00.187 | timeMax: 2024-07-02 09:45:00.188 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p35593/Proteomics/EXPLORIS_2/analytic_20240701/20240701_C35593_016_autoQC01.raw NA vals$rawrr: TRUE p3000/Proteomics/EXPLORIS_2/analytic_20240701/20240701_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240701/20240701_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240701/20240701_001_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-25 14:01:26.661708 | timeMax: 2024-07-02 14:01:26.661751 | timeDiff: 604800.0000422 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 14:03:56.415931 | timeMax: 2024-07-02 14:03:56.416508 | timeDiff: 5184000.00057721 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 351 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-03 12:03:56.41593 | timeMax: 2024-07-02 12:03:56.41651 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-05-03 12:03:56.416 | timeMax: 2024-07-02 12:03:56.417 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 p35660/Proteomics/QEXACTIVE_1/analytic_20240701/20240701_C35660_005_autoQC03dda.raw NA nrow dataFiltered(): 351 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 51 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). NA nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 102 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). p3000/Proteomics/QEXACTIVE_1/analytic_20240702/20240702_C3000_002_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 15:07:51.661906 | timeMax: 2024-07-02 15:07:51.662529 | timeDiff: 5184000.00062275 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-03 13:07:51.662 | timeMax: 2024-07-02 13:07:51.663 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 16:22:59.736576 | timeMax: 2024-07-02 16:22:59.737252 | timeDiff: 5184000.00067616 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-03 14:22:59.737 | timeMax: 2024-07-02 14:22:59.737 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 520 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... NA nrow dataFiltered(): 270 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 16:23:49.664406 | timeMax: 2024-07-02 16:23:49.664985 | timeDiff: 5184000.0005784 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-03 14:23:49.664 | timeMax: 2024-07-02 14:23:49.665 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1616 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-03 16:23:55.267015 | timeMax: 2024-07-02 16:23:55.267601 | timeDiff: 5184000.00058508 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 1092 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-03 14:23:55.26702 | timeMax: 2024-07-02 14:23:55.2676 | timeDiff: 5184000.00058007 nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-03 14:23:55.267 | timeMax: 2024-07-02 14:23:55.268 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-03 14:22:59.737 | timeMax: 2024-07-02 16:25:01.943464 | timeDiff: 5184122.20646429 nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-03 14:22:59.737 | timeMax: 2024-07-02 14:25:01.943 | timeDiff: 5184122.20600009 nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-03 14:23:55.267 | timeMax: 2024-07-02 16:25:06.23754 | timeDiff: 5184070.97053981 nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-03 14:23:55.267 | timeMax: 2024-07-02 14:25:06.238 | timeDiff: 5184070.97099996 nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-04 14:25:07.72711 | timeMax: 2024-07-02 14:25:06.238 | timeDiff: 15551998.5108898 nFacets: 4 nrow dataFiltered(): 2600 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 558 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-04 16:25:10.434951 | timeMax: 2024-07-02 14:25:06.238 | timeDiff: 15548395.8030486 nFacets: 4 nrow dataFiltered(): 2600 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 558 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-04 15:25:10.435 | timeMax: 2024-07-02 14:25:06.238 | timeDiff: 15548395.803 input timeRange: 15552000 | timeMin: 2024-01-04 14:25:03.42333 | timeMax: 2024-07-02 14:25:01.943 | timeDiff: 15551998.51967 nFacets: 4 nrow dataFiltered(): 2652 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-04 16:25:13.139092 | timeMax: 2024-07-02 14:25:01.943 | timeDiff: 15548388.8039079 nFacets: 4 nrow dataFiltered(): 2652 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-01-04 15:25:13.139 | timeMax: 2024-07-02 14:25:01.943 | timeDiff: 15548388.8040001 p34007/Proteomics/LUMOS_1/roschi_20240123_YEAST_DIA/20240123_015_autoQC03dia.raw p34007/Proteomics/LUMOS_1/roschi_20240129_YEAST_DIA_insol/20240129_015_autoQC03dia.raw NA nrow dataFiltered(): 2600 using 'ggh4x' package ... nrow dataFiltered(): 2652 using 'ggh4x' package ... nrow dataFiltered(): 558 using 'ggh4x' package ... nrow dataFiltered(): 558 using 'ggh4x' package ... nrow dataFiltered(): 630 using 'ggh4x' package ... nrow dataFiltered(): 630 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-26 08:17:07.514987 | timeMax: 2024-07-03 08:17:07.515031 | timeDiff: 604800.000043631 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 08:45:13.25908 | timeMax: 2024-07-03 08:45:13.259721 | timeDiff: 5184000.00064039 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 06:45:13.259 | timeMax: 2024-07-03 06:45:13.26 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 09:00:46.824872 | timeMax: 2024-07-03 09:00:46.825436 | timeDiff: 5184000.00056458 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 07:00:46.825 | timeMax: 2024-07-03 07:00:46.825 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240625/20240625_005_autoQC01.raw NA p25334/Proteomics/EXPLORIS_1/dlesli_20240627_DLP249/20240627_023_autoQC01.raw p25334/Proteomics/EXPLORIS_1/dlesli_20240627_DLP249/20240627_023_autoQC01.raw p25334/Proteomics/EXPLORIS_1/dlesli_20240627_DLP249/20240627_002_autoQC01_rep.raw p25334/Proteomics/EXPLORIS_1/dlesli_20240627_DLP249/20240627_002_autoQC01_rep.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240625/20240625_001_autoQC01.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240625/20240625_001_autoQC01.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240624/20240624_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240619/20240619_012_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 11:00:56.511498 | timeMax: 2024-07-03 11:00:56.512064 | timeDiff: 5184000.00056648 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 09:00:56.512 | timeMax: 2024-07-03 09:00:56.512 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/EXPLORIS_1/lkunz_20240701/20240701_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 11:02:44.677514 | timeMax: 2024-07-03 11:02:44.678086 | timeDiff: 5184000.00057173 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 09:02:44.678 | timeMax: 2024-07-03 09:02:44.678 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 11:05:31.248773 | timeMax: 2024-07-03 11:05:31.249346 | timeDiff: 5184000.00057364 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 09:05:31.249 | timeMax: 2024-07-03 09:05:31.249 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 11:06:17.148117 | timeMax: 2024-07-03 11:06:17.148691 | timeDiff: 5184000.00057435 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 09:06:17.148 | timeMax: 2024-07-03 09:06:17.149 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/EXPLORIS_1/lkunz_20240701/20240701_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 11:10:24.305809 | timeMax: 2024-07-03 11:10:24.306389 | timeDiff: 5184000.0005796 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 09:10:24.306 | timeMax: 2024-07-03 09:10:24.306 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/EXPLORIS_1/lkunz_20240701/20240701_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 11:12:42.048139 | timeMax: 2024-07-03 11:12:42.048784 | timeDiff: 5184000.00064445 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 09:12:42.048 | timeMax: 2024-07-03 09:12:42.049 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw Plotting chromatograms ... Read 22032 items vals$rawDiag: TRUE plotClick: NA plotChargeState reading index for 20240703_001_autoQC01.raw... plotCycleLoad `geom_smooth()` using formula = 'y ~ x' plotChargeState plotInjectionTime plotLockMassCorrection plotMzDistribution plotPrecursorHeatmap plotTicBasepeak plotChargeState p3000/Proteomics/EXPLORIS_1/lkunz_20240701/20240701_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240701/20240701_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240701/20240701_001_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240701_001_autoQC01.raw... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 14:20:53.320477 | timeMax: 2024-07-03 14:20:53.321141 | timeDiff: 5184000.00066352 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-04 12:20:53.32 | timeMax: 2024-07-03 12:20:53.321 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-27 12:20:54.409 | timeMax: 2024-07-03 12:20:53.321 | timeDiff: 5788798.91200018 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-27 12:20:54.409 | timeMax: 2024-04-30 12:22:09.135 | timeDiff: 259274.726000071 nFacets: 4 nrow dataFiltered(): 64 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 272987 autoQC01 module APEX long nrow: 48 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 52 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? vals$rawrr: TRUE vals$rawrr: FALSE input timeRange: 7776000 | timeMin: 2024-04-23 12:22:12.168 | timeMax: 2024-04-30 12:22:09.135 | timeDiff: 604796.967000008 nFacets: 4 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-23 12:22:12.168 | timeMax: 2024-05-07 12:25:10.071 | timeDiff: 1209777.90300012 nFacets: 4 nrow dataFiltered(): 176 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//NA input timeRange: 7776000 | timeMin: 2024-04-23 12:22:12.168 | timeMax: 2024-05-04 12:25:13.187 | timeDiff: 950581.019000053 nFacets: 4 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-18 12:25:38.846 | timeMax: 2024-05-04 12:25:13.187 | timeDiff: 1382374.34100008 nFacets: 4 nrow dataFiltered(): 160 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-18 12:25:38.846 | timeMax: 2024-04-26 12:25:38.846 | timeDiff: 691200 nFacets: 4 nrow dataFiltered(): 48 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-18 12:25:38.846 | timeMax: 2024-05-04 12:25:42.584 | timeDiff: 1382403.73800015 nFacets: 4 nrow dataFiltered(): 160 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-18 12:25:38.846 | timeMax: 2024-04-27 12:25:43.965 | timeDiff: 777605.118999958 nFacets: 4 nrow dataFiltered(): 96 using 'ggh4x' package ... vals$rawrr: TRUE Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw Plotting chromatograms ... Read 22032 items NA plotClick: p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 14:47:15.383823 | timeMax: 2024-07-03 14:47:15.384414 | timeDiff: 5184000.00059128 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-04 12:47:15.384 | timeMax: 2024-07-03 12:47:15.384 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... vals$rawrr: TRUE input timeRange: 7776000 | timeMin: 2024-05-04 12:47:15.384 | timeMax: 2024-06-09 12:47:16.433 | timeDiff: 3110401.04900002 nFacets: 4 nrow dataFiltered(): 816 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-07 12:49:07.213 | timeMax: 2024-05-13 12:49:07.213 | timeDiff: 3110400 nFacets: 4 nrow dataFiltered(): 464 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240429_2PCA/20240429_028_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 15:50:32.343604 | timeMax: 2024-07-03 15:50:32.344244 | timeDiff: 5184000.00063992 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-04 13:50:32.344 | timeMax: 2024-07-03 13:50:32.344 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... p35272/Proteomics/LUMOS_1/analytic_20240617/20240617_C35272_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35272/Proteomics/LUMOS_1/analytic_20240617/20240617_C35272_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240617_01_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw plotClick: plotClick: NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_001_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2024-05-04 13:50:32.344 | timeMax: 2024-06-30 13:50:33.135 | timeDiff: 4924800.79099989 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-04 13:50:32.344 | timeMax: 2024-06-24 13:50:33.135 | timeDiff: 4406400.79099989 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-04 13:50:32.344 | timeMax: 2024-06-30 13:54:49.263 | timeDiff: 4925056.91899991 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-04 13:50:32.344 | timeMax: 2024-06-28 13:54:53.567 | timeDiff: 4752261.22299981 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_01_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw p3127/Proteomics/LUMOS_1/ackle_20240513_20240514_KDELR/20240513_006_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_001_autoQC01.raw p35526/Proteomics/LUMOS_1/roschi_20240615_test_andrew_longer_gradient/20240615_001_autoQC01.raw NA reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-26 16:00:54.335296 | timeMax: 2024-07-03 16:00:54.335332 | timeDiff: 604800.000035763 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp NA plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw Plotting chromatograms ... Read 22032 items p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-26 16:24:06.21844 | timeMax: 2024-07-03 16:24:06.218493 | timeDiff: 604800.000053883 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-26 16:29:34.150213 | timeMax: 2024-07-03 16:29:34.150264 | timeDiff: 604800.000051022 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 22:06:00.222265 | timeMax: 2024-07-03 22:06:00.222845 | timeDiff: 5184000.0005796 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-04 20:06:00.222 | timeMax: 2024-07-03 20:06:00.223 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA vals$rawrr: TRUE vals$rawDiag: TRUE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240703_001_autoQC01.raw... p3000/Proteomics/EXPLORIS_1/lkunz_20240701/20240701_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240701/20240701_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240701/20240701_001_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240701_001_autoQC01.raw... p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 22:07:08.755084 | timeMax: 2024-07-03 22:07:08.755722 | timeDiff: 5184000.00063777 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 20:07:08.755 | timeMax: 2024-07-03 20:07:08.756 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 22:07:38.065177 | timeMax: 2024-07-03 22:07:38.065791 | timeDiff: 5184000.0006144 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 20:07:38.065 | timeMax: 2024-07-03 20:07:38.066 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 22:08:34.625939 | timeMax: 2024-07-03 22:08:34.626598 | timeDiff: 5184000.00065947 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 20:08:34.626 | timeMax: 2024-07-03 20:08:34.627 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-04 22:22:36.825201 | timeMax: 2024-07-03 22:22:36.825786 | timeDiff: 5184000.0005846 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-04 20:22:36.825 | timeMax: 2024-07-03 20:22:36.826 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_007_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_007_autoQC01.raw Plotting chromatograms ... Read 22032 items vals$rawDiag: TRUE NA plotChargeState reading index for 20240703_007_autoQC01.raw... p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_007_autoQC01.raw plotClick: plotClick: p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_001_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240703_001_autoQC01.raw... NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_007_autoQC01.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_007_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240703_007_autoQC01.raw... p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_007_autoQC01.raw NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_007_autoQC01.raw plotClick: plotClick: NA plotCycleLoad `geom_smooth()` using formula = 'y ~ x' plotCycleTime plotLockMassCorrection plotMzDistribution nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_007_autoQC01.raw plotClick: p3189/Proteomics/EXPLORIS_1/kbende_20240531/20240531_006_autoQC01.raw NA p3189/Proteomics/EXPLORIS_1/kbende_20240531/20240531_011_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 10:20:05.542931 | timeMax: 2024-07-04 10:20:05.5435 | timeDiff: 5184000.00056863 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-05 08:20:05.543 | timeMax: 2024-07-04 08:20:05.544 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_013_autoQC01.raw NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_013_autoQC01.raw NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_013_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_013_autoQC01.raw vals$rawDiag: TRUE vals$rawrr: TRUE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_013_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_013_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_013_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240703_013_autoQC01.raw... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 13:54:44.135774 | timeMax: 2024-07-04 13:54:44.136337 | timeDiff: 5184000.00056243 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-05 11:54:44.136 | timeMax: 2024-07-04 11:54:44.136 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw NA nrow dataFiltered(): 1168 using 'ggh4x' package ... nrow dataFiltered(): 1168 using 'ggh4x' package ... nrow dataFiltered(): 1168 using 'ggh4x' package ... p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw Plotting chromatograms ... NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw Plotting chromatograms ... NA plotClick: p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw NA plotClick: p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw plotClick: NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_32_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_32_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240606_32_autoQC01.raw Plotting chromatograms ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_05_autoQC01.raw Plotting chromatograms ... Plotting chromatograms ... plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw Plotting chromatograms ... p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw plotClick: Plotting chromatograms ... plotClick: plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw Plotting chromatograms ... p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw Plotting chromatograms ... p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw plotClick: p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_012_autoQC01.raw plotClick: NA nrow dataFiltered(): 1168 using 'ggh4x' package ... Read 22032 items Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 14:58:04.389293 | timeMax: 2024-07-04 14:58:04.390148 | timeDiff: 5184000.00085473 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-05 12:58:04.389 | timeMax: 2024-07-04 12:58:04.39 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 15:55:45.789963 | timeMax: 2024-07-04 15:55:45.790744 | timeDiff: 5184000.00078058 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-05 13:55:45.79 | timeMax: 2024-07-04 13:55:45.791 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p35243/Proteomics/EXPLORIS_2/analytic_20240531/20240531_C35243_001_autoQC01.raw NA p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_079_autoQC01.raw p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_079_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_079_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 21:07:47.673486 | timeMax: 2024-07-04 21:07:47.674049 | timeDiff: 5184000.00056338 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-05 19:07:47.673 | timeMax: 2024-07-04 19:07:47.674 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_013_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-05 21:36:36.866752 | timeMax: 2024-07-04 21:36:36.867345 | timeDiff: 5184000.00059342 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-05 19:36:36.867 | timeMax: 2024-07-04 19:36:36.867 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-06 08:54:21.506971 | timeMax: 2024-07-05 08:54:21.507544 | timeDiff: 5184000.0005734 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-06 06:54:21.507 | timeMax: 2024-07-05 06:54:21.508 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). vals$rawrr: TRUE vals$rawDiag: TRUE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_019_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_019_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_019_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240703_019_autoQC01.raw... NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_019_autoQC01.raw plotClick: NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_019_autoQC01.raw plotClick: NA input timeRange: 7776000 | timeMin: 2024-05-06 06:54:21.507 | timeMax: 2024-07-05 06:54:22.33719 | timeDiff: 5184000.83018994 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-06 06:54:21.507 | timeMax: 2024-07-05 06:54:22.337 | timeDiff: 5184000.82999992 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-06 10:53:42.190784 | timeMax: 2024-07-05 10:53:42.19143 | timeDiff: 5184000.00064564 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-06 08:53:42.191 | timeMax: 2024-07-05 08:53:42.191 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA p35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_007_autoQC01.raw NA input timeRange: 31536000 | timeMin: 2024-05-06 08:53:42.191 | timeMax: 2024-07-05 10:54:58.885174 | timeDiff: 5184076.69417405 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2024-05-06 08:53:42.191 | timeMax: 2024-07-05 08:54:58.885 | timeDiff: 5184076.69400001 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-07-31 08:55:00.132 | timeMax: 2024-07-05 08:54:58.885 | timeDiff: 29375998.753 nFacets: 4 nrow dataFiltered(): 8448 using 'ggh4x' package ... Warning: Removed 45 rows containing missing values or values outside the scale range (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_019_autoQC01.raw plotClick: NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_019_autoQC01.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-06 12:14:01.535198 | timeMax: 2024-07-05 12:14:01.535839 | timeDiff: 5184000.00064087 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-06 10:14:01.535 | timeMax: 2024-07-05 10:14:01.536 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_025_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_025_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_025_autoQC01.raw vals$rawDiag: TRUE plotChargeState reading index for 20240703_025_autoQC01.raw... vals$rawrr: TRUE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_025_autoQC01.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_025_autoQC01.raw plotClick: NA Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_025_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-06 16:39:51.970564 | timeMax: 2024-07-05 16:39:51.971129 | timeDiff: 5184000.00056505 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-06 14:39:51.971 | timeMax: 2024-07-05 14:39:51.971 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... NA p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_001_autoQC03dia.d.zip p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_053_autoQC03dia.d.zip NA p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_106b_autoQC03dia.d.zip NA p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_106b_autoQC03dia.d.zip input timeRange: 7776000 | timeMin: 2024-06-18 14:40:00.968 | timeMax: 2024-07-05 14:39:51.971 | timeDiff: 1468791.00300002 nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_001_autoQC03dia.d.zip p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_053_autoQC03dia.d.zip p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_106b_autoQC03dia.d.zip NA p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_001_autoQC03dia.d.zip NA p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_106b_autoQC03dia.d.zip NA plotClick: fn has changed to /srv/www/htdocs//NA p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_053_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p35116/Proteomics/TIMSTOFFLEX_1/cpanse_20240703/zip/20240703_053_autoQC03dia.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-06 20:15:52.131748 | timeMax: 2024-07-05 20:15:52.132405 | timeDiff: 5184000.0006566 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-06 18:15:52.132 | timeMax: 2024-07-05 18:15:52.132 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_04_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_03_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-06 20:22:58.634872 | timeMax: 2024-07-05 20:22:58.635548 | timeDiff: 5184000.00067592 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-06 18:22:58.635 | timeMax: 2024-07-05 18:22:58.636 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_031_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_031_autoQC01.raw NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_031_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-06-28 22:06:02.852308 | timeMax: 2024-07-05 22:06:02.85233 | timeDiff: 604800.000021935 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-07 11:06:34.943022 | timeMax: 2024-07-06 11:06:34.943591 | timeDiff: 5184000.00056911 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-07 09:06:34.943 | timeMax: 2024-07-06 09:06:34.944 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_037_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-07 18:08:35.060888 | timeMax: 2024-07-06 18:08:35.061471 | timeDiff: 5184000.00058293 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-07 16:08:35.061 | timeMax: 2024-07-06 16:08:35.061 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA vals$rawrr: TRUE vals$rawDiag: TRUE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_043_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_043_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_043_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240703_043_autoQC01.raw... NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_043_autoQC01.raw