Listening on http://127.0.0.1:38209 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-12 21:57:15.625026 | timeMax: 2024-07-11 21:57:15.625608 | timeDiff: 5184000.0005827 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-12 19:57:15.625 | timeMax: 2024-07-11 19:57:15.626 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1392 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240711_03_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_01_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... vals$rawrr: TRUE NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_04_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_04_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_04_autoQC03dda.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240711_04_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_03_autoQC03dia.raw vals$rawrr: TRUE NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240711_04_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240711_04_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240711_04_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240705_04_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_30_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240607_30_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_30_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_19_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_19_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_19_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... Plotting chromatograms ... plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawrr-autoQC03-plotTools 1: runApp nrow dataFiltered(): 270 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-04-12 19:57:45.46329 | timeMax: 2024-07-11 19:57:15.626 | timeDiff: 7775970.16270995 nFacets: 4 nrow dataFiltered(): 936 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-12 23:02:00.86639 | timeMax: 2024-07-11 19:57:15.626 | timeDiff: 7772114.75960994 nFacets: 4 nrow dataFiltered(): 936 using 'ggh4x' package ... nrow dataFiltered(): 360 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 936 using 'ggh4x' package ... nrow dataFiltered(): 360 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-12 21:02:00.866 | timeMax: 2024-07-11 19:57:15.626 | timeDiff: 7772114.75999999 nFacets: 4 nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw Plotting chromatograms ... plotClick: NA nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 360 using 'ggh4x' package ... p35114/Proteomics/LUMOS_1/analytic_20240508/20240508_C35114_005_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35114/Proteomics/LUMOS_1/analytic_20240508/20240508_C35114_005_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p35114/Proteomics/LUMOS_1/analytic_20240508/20240508_C35114_005_autoQC03dia.raw Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-12 22:21:49.782335 | timeMax: 2024-07-11 22:21:49.78291 | timeDiff: 5184000.00057507 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-12 20:21:49.782 | timeMax: 2024-07-11 20:21:49.783 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_067_autoQC01_rep.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw NA vals$rawrr: TRUE vals$rawDiag: TRUE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240703_073_autoQC01_20240711213035.raw... p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_067_autoQC01_rep.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_067_autoQC01_rep.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_067_autoQC01_rep.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_067_autoQC01_rep.raw Plotting chromatograms ... Read 22032 items reading index for 20240703_067_autoQC01_rep.raw... NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw Plotting chromatograms ... Read 22032 items reading index for 20240703_073_autoQC01_20240711213035.raw... p35226/Proteomics/EXPLORIS_1/analytic_20240611/20240611_C35226_016_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 08:22:13.119463 | timeMax: 2024-07-12 08:22:13.12003 | timeDiff: 5184000.0005672 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-13 06:22:13.119 | timeMax: 2024-07-12 06:22:13.12 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_067_autoQC01_rep.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_067_autoQC01_rep.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_067_autoQC01_rep.raw Plotting chromatograms ... Read 22032 items vals$rawDiag: TRUE p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw Plotting chromatograms ... Read 22032 items plotChargeState reading index for 20240703_073_autoQC01_20240711213035.raw... p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 08:26:54.970627 | timeMax: 2024-07-12 08:26:54.971236 | timeDiff: 5184000.00060916 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-13 06:26:54.971 | timeMax: 2024-07-12 06:26:54.971 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw plotClick: NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 08:56:09.122695 | timeMax: 2024-07-12 08:56:09.123282 | timeDiff: 5184000.00058675 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-13 06:56:09.123 | timeMax: 2024-07-12 06:56:09.123 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1088 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 11:02:01.409118 | timeMax: 2024-07-12 11:02:01.409756 | timeDiff: 5184000.00063753 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-13 09:02:01.409 | timeMax: 2024-07-12 09:02:01.41 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 14:16:14.684567 | timeMax: 2024-07-12 14:16:14.685145 | timeDiff: 5184000.00057745 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-13 12:16:14.685 | timeMax: 2024-07-12 12:16:14.685 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 15:00:13.112689 | timeMax: 2024-07-12 15:00:13.113283 | timeDiff: 5184000.00059485 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-13 13:00:13.113 | timeMax: 2024-07-12 13:00:13.113 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 15:08:09.279743 | timeMax: 2024-07-12 15:08:09.280337 | timeDiff: 5184000.00059319 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-13 13:08:09.28 | timeMax: 2024-07-12 13:08:09.28 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 16:05:44.698127 | timeMax: 2024-07-12 16:05:44.698727 | timeDiff: 5184000.00059962 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-13 14:05:44.698 | timeMax: 2024-07-12 14:05:44.699 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 16:14:57.499018 | timeMax: 2024-07-12 16:14:57.499623 | timeDiff: 5184000.00060439 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-13 14:14:57.499 | timeMax: 2024-07-12 14:14:57.5 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 16:15:05.781766 | timeMax: 2024-07-12 16:15:05.78235 | timeDiff: 5184000.00058389 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-13 14:15:05.782 | timeMax: 2024-07-12 14:15:05.782 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 16:17:09.370744 | timeMax: 2024-07-12 16:17:09.37136 | timeDiff: 5184000.00061584 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-13 14:17:09.371 | timeMax: 2024-07-12 14:17:09.371 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 16:20:37.514822 | timeMax: 2024-07-12 16:20:37.515411 | timeDiff: 5184000.00058913 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-13 14:20:37.515 | timeMax: 2024-07-12 14:20:37.515 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-13 16:28:06.599546 | timeMax: 2024-07-12 16:28:06.600117 | timeDiff: 5184000.00057054 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-13 14:28:06.6 | timeMax: 2024-07-12 14:28:06.6 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). vals$rawrr: TRUE vals$rawDiag: TRUE NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_079_rep_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_079_rep_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_079_rep_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20240703_079_rep_autoQC01.raw... Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file