Listening on http://127.0.0.1:36701

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-05-16 07:32:29.514009 | timeMax: 2024-07-15 07:32:29.514592 | timeDiff: 5184000.00058341
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1376
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
Warning: Removed 47 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 29 rows containing missing values or values outside the scale
range (`geom_line()`).
input timeRange: 7776000 | timeMin: 2024-05-16 05:32:29.514 | timeMax: 2024-07-15 05:32:29.515 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1376
using 'ggh4x' package ...
Warning: Removed 47 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 29 rows containing missing values or values outside the scale
range (`geom_line()`).
nrow dataFiltered(): 1376
using 'ggh4x' package ...
Warning: Removed 94 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 29 rows containing missing values or values outside the scale
range (`geom_line()`).
p35765/Proteomics/QEXACTIVE_1/analytic_20240712/20240712_C35765_001_autoQC01.raw
NA
p35765/Proteomics/QEXACTIVE_1/analytic_20240712/20240712_C35765_001_autoQC01.raw
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 416
using 'ggh4x' package ...
NA
p35765/Proteomics/QEXACTIVE_1/analytic_20240712/20240712_C35765_007_autoQC03dda.raw
nrow dataFiltered(): 416
using 'ggh4x' package ...


Execution halted