Listening on http://127.0.0.1:34217 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-17 09:57:41.578032 | timeMax: 2024-07-16 09:57:41.578613 | timeDiff: 5184000.00058103 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1712 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-17 07:57:41.578 | timeMax: 2024-07-16 07:57:41.579 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240715_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240715_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240715_002_autoQC03dda.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-17 10:07:10.944049 | timeMax: 2024-07-16 10:07:10.944626 | timeDiff: 5184000.00057721 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-17 08:07:10.944 | timeMax: 2024-07-16 08:07:10.945 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 39 using 'ggh4x' package ... p35516/Proteomics/TIMSTOF_1/analytic_20240715/zip/20240715_001_autoQC03dda.d.zip NA p35607/Proteomics/TIMSTOF_1/tcavaz_20240710_/zip/20240710_002_autoQC03dia.d.zip input timeRange: 15552000 | timeMin: 2024-05-17 08:07:10.944 | timeMax: 2024-07-16 10:08:02.421465 | timeDiff: 5184051.47746539 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-17 08:07:10.944 | timeMax: 2024-07-16 08:08:02.421 | timeDiff: 5184051.477 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-03 08:08:03.593 | timeMax: 2024-07-16 08:08:02.421 | timeDiff: 6393598.82800007 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-17 08:08:08.515 | timeMax: 2024-07-16 08:08:02.421 | timeDiff: 7775993.9059999 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 558 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-03-30 08:08:17.156 | timeMax: 2024-07-16 08:08:02.421 | timeDiff: 9331185.2650001 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 666 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-02-23 08:08:25.701 | timeMax: 2024-07-16 08:08:02.421 | timeDiff: 12441576.72 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1116 using 'ggh4x' package ... input timeRange: 126144000 | timeMin: 2024-02-23 08:08:25.701 | timeMax: 2024-07-16 10:08:38.735722 | timeDiff: 12441613.0347216 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1116 using 'ggh4x' package ... input timeRange: 126144000 | timeMin: 2024-02-23 08:08:25.701 | timeMax: 2024-07-16 08:08:38.736 | timeDiff: 12441613.0350001 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1116 using 'ggh4x' package ... nrow dataFiltered(): 39 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-17 10:42:43.529509 | timeMax: 2024-07-16 10:42:43.530087 | timeDiff: 5184000.00057817 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-17 08:42:43.52951 | timeMax: 2024-07-16 08:42:43.53009 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-17 08:42:43.53 | timeMax: 2024-07-16 08:42:43.53 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-17 08:42:43.53 | timeMax: 2024-07-16 10:42:56.910877 | timeDiff: 5184013.38087678 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-17 08:42:43.53 | timeMax: 2024-07-16 08:42:56.911 | timeDiff: 5184013.38100004 nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-07-17 08:42:58.33108 | timeMax: 2024-07-16 08:42:56.911 | timeDiff: 31535998.5799201 nFacets: 4 nrow dataFiltered(): 5564 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 846 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-07-17 11:43:04.877906 | timeMax: 2024-07-16 08:42:56.911 | timeDiff: 31532392.0330942 nFacets: 4 nrow dataFiltered(): 5564 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 846 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-07-17 09:43:04.878 | timeMax: 2024-07-16 08:42:56.911 | timeDiff: 31532392.033 nrow dataFiltered(): 5564 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-17 11:50:36.648167 | timeMax: 2024-07-16 11:50:36.648771 | timeDiff: 5184000.00060415 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-17 12:37:48.851094 | timeMax: 2024-07-16 12:37:48.851677 | timeDiff: 5184000.00058365 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-17 10:37:48.851 | timeMax: 2024-07-16 10:37:48.852 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p3000/Proteomics/LUMOS_2/analytics_20240716_autoQC/20240716_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-17 14:28:34.933397 | timeMax: 2024-07-16 14:28:34.934002 | timeDiff: 5184000.00060511 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-17 12:28:34.933 | timeMax: 2024-07-16 12:28:34.934 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 546 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p3000/Proteomics/LUMOS_2/analytics_20240716_autoQC/20240716_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240716_autoQC/20240716_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240716_autoQC/20240716_002_autoQC03dda.raw NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-17 16:02:25.589471 | timeMax: 2024-07-16 16:02:25.590506 | timeDiff: 5184000.00103521 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 50 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 28 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-05-17 14:02:25.589 | timeMax: 2024-07-16 14:02:25.591 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 50 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 28 rows containing missing values or values outside the scale range (`geom_line()`). NA p35765/Proteomics/QEXACTIVE_1/analytic_20240716/20240716_C35765_006_autoQC01.raw NA p35765/Proteomics/QEXACTIVE_1/analytic_20240715/20240715_C35765_007_autoQC01.raw p35765/Proteomics/QEXACTIVE_1/analytic_20240716/20240716_C35765_006_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 442 using 'ggh4x' package ... NA p35765/Proteomics/QEXACTIVE_1/analytic_20240716/20240716_C35765_007_autoQC03dda.raw nrow dataFiltered(): 442 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-18 12:28:19.582609 | timeMax: 2024-07-17 12:28:19.583552 | timeDiff: 5184000.00094295 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1744 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-18 10:28:19.583 | timeMax: 2024-07-17 10:28:19.584 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1744 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 559 using 'ggh4x' package ... NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-18 14:12:48.55243 | timeMax: 2024-07-17 14:12:48.552998 | timeDiff: 5184000.00056744 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1760 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-18 12:12:48.552 | timeMax: 2024-07-17 12:12:48.553 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1760 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p35803/Proteomics/LUMOS_2/analytic_20240717/20240717_C35803_001_autoQC01.raw Execution halted