Listening on http://127.0.0.1:40397

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-05-23 09:49:50.178437 | timeMax: 2024-07-22 09:49:50.179081 | timeDiff: 5184000.00064421
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2024-05-23 07:49:50.178 | timeMax: 2024-07-22 07:49:50.179 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1440
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
Warning: Removed 15 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
p25334/Proteomics/EXPLORIS_1/dlesli_20240715_DLP250/20240627_033_autoQC01.raw
p25334/Proteomics/EXPLORIS_1/dlesli_20240715_DLP250/20240627_033_autoQC01.raw
p25334/Proteomics/EXPLORIS_1/dlesli_20240715_DLP250/20240627_037_autoQC01.raw
p25334/Proteomics/EXPLORIS_1/dlesli_20240715_DLP250/20240627_028_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p25334/Proteomics/EXPLORIS_1/dlesli_20240715_DLP250/20240627_028_autoQC01.raw
p25334/Proteomics/EXPLORIS_1/dlesli_20240715_DLP250/20240627_033_autoQC01.raw
p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_010_autoQC01.raw
p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_010_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_010_autoQC01.raw
p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_001_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_001_autoQC01.raw
p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_085_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_085_autoQC01.raw
p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_001_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_001_autoQC01.raw
NA
p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw
plotClick: 
fn has changed to /srv/www/htdocs//p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_073_autoQC01_20240711213035.raw
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-05-23 10:06:25.176947 | timeMax: 2024-07-22 10:06:25.177528 | timeDiff: 5184000.00058079
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 126
using 'ggh4x' package ...
nrow dataFiltered(): 936
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-05-23 08:06:25.17695 | timeMax: 2024-07-22 08:06:25.17753 | timeDiff: 5184000.00058007
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nrow dataFiltered(): 936
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 126
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-05-23 08:06:25.177 | timeMax: 2024-07-22 08:06:25.178 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 936
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 126
using 'ggh4x' package ...
p3000/Proteomics/FUSION_2/chiawei_20240715/20240715_003_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240715/20240715_003_autoQC03dia.raw
p3000/Proteomics/FUSION_2/chiawei_20240715/20240715_002_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240715/20240715_002_autoQC03dda.raw
p3000/Proteomics/FUSION_2/chiawei_20240715/20240715_002_autoQC03dda.raw
plotClick: 
p3000/Proteomics/FUSION_2/chiawei_20240715/20240715_002_autoQC03dda.raw
plotClick: 
plotClick: 
plotClick: 
plotClick: 
plotClick: 
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plotClick: 
NA
plotClick: 
p3000/Proteomics/FUSION_2/chiawei_20240715/20240715_003_autoQC03dia.raw
NA
p3000/Proteomics/FUSION_2/chiawei_20240715/20240715_003_autoQC03dia.raw
plotClick: 
NA


Execution halted