Listening on http://127.0.0.1:38003 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-23 12:12:47.134331 | timeMax: 2024-07-22 12:12:47.136702 | timeDiff: 5184000.00237107 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-05-23 10:12:47.134 | timeMax: 2024-07-22 10:12:47.137 | timeDiff: 5184000.00300002 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1888 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_007_autoQC01.raw NA p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_007_autoQC01.raw NA p35804/Proteomics/LUMOS_2/analytic_20240718/20240719_C35804_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//NA NA p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_007_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-23 12:15:06.374331 | timeMax: 2024-07-22 12:15:06.376081 | timeDiff: 5184000.00174975 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1888 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-23 10:15:06.374 | timeMax: 2024-07-22 10:15:06.376 | timeDiff: 5184000.00199986 nFacets: 4 nrow dataFiltered(): 1888 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_007_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-23 12:34:59.559034 | timeMax: 2024-07-22 12:34:59.560405 | timeDiff: 5184000.00137019 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-23 10:34:59.559 | timeMax: 2024-07-22 10:34:59.56 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1888 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_007_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-23 14:16:13.785401 | timeMax: 2024-07-22 14:16:13.786916 | timeDiff: 5184000.00151515 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-05-23 12:16:13.7854 | timeMax: 2024-07-22 12:16:13.78692 | timeDiff: 5184000.00151992 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-23 14:41:10.879689 | timeMax: 2024-07-22 14:41:10.881273 | timeDiff: 5184000.00158381 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-23 12:41:10.88 | timeMax: 2024-07-22 12:41:10.881 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1888 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 533 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-23 14:51:14.048677 | timeMax: 2024-07-22 14:51:14.049807 | timeDiff: 5184000.00112987 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-23 12:51:14.04868 | timeMax: 2024-07-22 12:51:14.04981 | timeDiff: 5184000.00113034 nFacets: 1 nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-23 12:51:14.049 | timeMax: 2024-07-22 12:51:14.05 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_002_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240709/20240709_002_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-23 15:24:59.726772 | timeMax: 2024-07-22 15:24:59.727364 | timeDiff: 5184000.00059271 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-23 13:24:59.727 | timeMax: 2024-07-22 13:24:59.727 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_003_autoQC03dia.raw nrow dataFiltered(): 325 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_003_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-23 16:35:28.104462 | timeMax: 2024-07-22 16:35:28.106516 | timeDiff: 5184000.0020535 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 input timeRange: 7776000 | timeMin: 2024-05-23 14:35:28.10446 | timeMax: 2024-07-22 14:35:28.10652 | timeDiff: 5184000.00205994 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-23 14:35:28.104 | timeMax: 2024-07-22 14:35:28.107 | timeDiff: 5184000.00300002 nFacets: 1 nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_002_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_002_autoQC03dda_rep.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_002_autoQC03dda_rep.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_003_autoQC03dia.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240722/20240722_002_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-23 16:58:43.587133 | timeMax: 2024-07-22 16:58:43.587739 | timeDiff: 5184000.00060511 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-07-16 08:10:42.050413 | timeMax: 2024-07-23 08:10:42.05045 | timeDiff: 604800.000036955 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 08:10:49.605312 | timeMax: 2024-07-23 08:10:49.605872 | timeDiff: 5184000.00056076 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1904 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-24 06:10:49.605 | timeMax: 2024-07-23 06:10:49.606 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1904 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p3127/Proteomics/LUMOS_2/ackle_20240719/20240719_007_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240719_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240719_001_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240719_007_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 08:36:15.720479 | timeMax: 2024-07-23 08:36:15.721122 | timeDiff: 5184000.00064325 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 48 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 24 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-05-24 06:36:15.72 | timeMax: 2024-07-23 06:36:15.721 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 48 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 24 rows containing missing values or values outside the scale range (`geom_line()`). NA p35808/Proteomics/QEXACTIVE_1/analytic_20240718/20240718_C35808_008_autoQC01.raw nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 96 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 24 rows containing missing values or values outside the scale range (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 442 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 08:57:00.828167 | timeMax: 2024-07-23 08:57:00.828861 | timeDiff: 5184000.00069427 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-24 06:57:00.828 | timeMax: 2024-07-23 06:57:00.829 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 09:40:53.080368 | timeMax: 2024-07-23 09:40:53.081088 | timeDiff: 5184000.0007205 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-24 07:40:53.08 | timeMax: 2024-07-23 07:40:53.081 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 2 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... p35606/Proteomics/LUMOS_2/analytic_20240704/20240704_C35606_009_autoQC03dda.raw nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... NA input timeRange: 31536000 | timeMin: 2024-05-24 07:40:53.08 | timeMax: 2024-07-23 09:41:28.700656 | timeDiff: 5184035.62065578 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-24 07:40:53.08 | timeMax: 2024-07-23 07:41:28.701 | timeDiff: 5184035.62100005 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 09:41:55.550397 | timeMax: 2024-07-23 09:41:55.551641 | timeDiff: 5184000.00124383 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-24 07:41:55.55 | timeMax: 2024-07-23 07:41:55.552 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1904 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 507 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 09:42:39.165062 | timeMax: 2024-07-23 09:42:39.165738 | timeDiff: 5184000.00067663 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 936 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-24 07:42:39.16506 | timeMax: 2024-07-23 07:42:39.16574 | timeDiff: 5184000.00067997 nFacets: 4 nrow dataFiltered(): 936 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-24 07:42:39.165 | timeMax: 2024-07-23 07:42:39.166 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 936 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240626_03_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw input timeRange: 31536000 | timeMin: 2024-05-24 07:42:39.165 | timeMax: 2024-07-23 09:46:01.397785 | timeDiff: 5184202.23278499 nFacets: 4 nrow dataFiltered(): 936 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-24 07:42:39.165 | timeMax: 2024-07-23 07:46:01.398 | timeDiff: 5184202.23300004 nFacets: 4 nrow dataFiltered(): 936 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-09-01 07:46:03.33 | timeMax: 2024-07-23 07:46:01.398 | timeDiff: 28166398.0680001 nFacets: 5 nrow dataFiltered(): 5902 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 990 using 'ggh4x' package ... NA input timeRange: 31536000 | timeMin: 2023-08-18 07:41:30.756 | timeMax: 2024-07-23 07:41:28.701 | timeDiff: 29375997.9449999 nFacets: 4 nrow dataFiltered(): 4992 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 846 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-24 07:41:55.55 | timeMax: 2024-07-23 09:46:23.687039 | timeDiff: 5184268.13703871 nFacets: 2 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-24 07:41:55.55 | timeMax: 2024-07-23 07:46:23.687 | timeDiff: 5184268.13700008 nFacets: 2 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-08 07:46:23.702 | timeMax: 2024-07-23 07:46:23.687 | timeDiff: 24969599.9850001 nFacets: 3 nrow dataFiltered(): 2431 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1242 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 10:04:33.233301 | timeMax: 2024-07-23 10:04:33.234119 | timeDiff: 5184000.00081825 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-24 08:04:33.233 | timeMax: 2024-07-23 08:04:33.234 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2024-05-24 08:04:33.233 | timeMax: 2024-07-23 10:04:48.642323 | timeDiff: 5184015.40932322 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2024-05-24 08:04:33.233 | timeMax: 2024-07-23 08:04:48.642 | timeDiff: 5184015.40899992 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-09-02 08:04:50.349 | timeMax: 2024-07-23 08:04:48.642 | timeDiff: 28079998.293 nFacets: 4 nrow dataFiltered(): 7680 using 'ggh4x' package ... Warning: Removed 35 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 7984 using 'ggh4x' package ... Warning: Removed 258 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 16 rows containing missing values or values outside the scale range (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 14:19:47.903946 | timeMax: 2024-07-23 14:19:47.904518 | timeDiff: 5184000.00057268 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-24 12:19:47.904 | timeMax: 2024-07-23 12:19:47.905 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 14:39:09.378977 | timeMax: 2024-07-23 14:39:09.379979 | timeDiff: 5184000.00100255 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-24 12:39:09.379 | timeMax: 2024-07-23 12:39:09.38 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 14:54:41.316304 | timeMax: 2024-07-23 14:54:41.31688 | timeDiff: 5184000.00057578 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 936 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-24 12:54:41.3163 | timeMax: 2024-07-23 12:54:41.31688 | timeDiff: 5184000.00057983 nFacets: 4 nrow dataFiltered(): 936 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-24 12:54:41.316 | timeMax: 2024-07-23 12:54:41.317 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 936 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p35822/Proteomics/FUSION_2/analytic_20240719/20240719_C35822_007_autoQC03dda.raw NA p35822/Proteomics/FUSION_2/analytic_20240719/20240719_C35822_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35822/Proteomics/FUSION_2/analytic_20240719/20240719_C35822_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35822/Proteomics/FUSION_2/analytic_20240719/20240719_C35822_007_autoQC03dia.raw p35822/Proteomics/FUSION_2/analytic_20240719/20240719_C35822_007_autoQC03dia.raw NA p35822/Proteomics/FUSION_2/analytic_20240719/20240719_C35822_007_autoQC03dia.raw NA p35822/Proteomics/FUSION_2/analytic_20240719/20240719_C35822_007_autoQC03dia.raw NA p35822/Proteomics/FUSION_2/analytic_20240719/20240719_C35822_007_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240716/20240716_003_autoQC03dda.raw NA p35811/Proteomics/EXPLORIS_2/analytic_20240719/20240719_C35811_009_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 17:01:33.941319 | timeMax: 2024-07-23 17:01:33.941885 | timeDiff: 5184000.00056601 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-24 15:01:33.941 | timeMax: 2024-07-23 15:01:33.942 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-24 17:06:06.676794 | timeMax: 2024-07-23 17:06:06.67736 | timeDiff: 5184000.00056529 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-24 15:06:06.677 | timeMax: 2024-07-23 15:06:06.677 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240722/20240722_005_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240722/20240722_005_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240722/20240722_003_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-25 08:38:51.647007 | timeMax: 2024-07-24 08:38:51.647586 | timeDiff: 5184000.00057936 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-25 06:38:51.647 | timeMax: 2024-07-24 06:38:51.648 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1952 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). p35673/Proteomics/LUMOS_2/analytic_20240709/20240709_C35673_001r_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240719_025_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-25 09:46:15.251115 | timeMax: 2024-07-24 09:46:15.252192 | timeDiff: 5184000.00107718 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-25 07:46:15.251 | timeMax: 2024-07-24 07:46:15.252 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). vals$rawrr: TRUE nFacets: 5 nrow dataFiltered(): 1640 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 3 nrow dataFiltered(): 984 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 2 nrow dataFiltered(): 656 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 nrow dataFiltered(): 328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA input timeRange: 126144000 | timeMin: 2024-05-25 07:46:15.251 | timeMax: 2024-07-24 09:46:52.29894 | timeDiff: 5184037.04794049 nFacets: 1 nrow dataFiltered(): 328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 126144000 | timeMin: 2024-05-25 07:46:15.251 | timeMax: 2024-07-24 07:46:52.299 | timeDiff: 5184037.0480001 nFacets: 1 nrow dataFiltered(): 328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 126144000 | timeMin: 2024-05-25 07:46:53.604 | timeMax: 2024-07-24 07:46:52.299 | timeDiff: 5183998.69499993 nFacets: 1 nrow dataFiltered(): 328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 126144000 | timeMin: 2021-03-19 07:46:53.604 | timeMax: 2024-07-24 07:46:52.299 | timeDiff: 105667198.695 nFacets: 1 nrow dataFiltered(): 4896 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 nrow dataFiltered(): 7996 using 'ggh4x' package ... Warning: Removed 20 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-25 12:21:38.441539 | timeMax: 2024-07-24 12:21:38.442571 | timeDiff: 5184000.00103259 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-25 10:21:38.442 | timeMax: 2024-07-24 10:21:38.443 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values or values outside the scale range (`geom_point()`). Execution halted