Listening on http://127.0.0.1:44805 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-27 11:50:38.309055 | timeMax: 2024-07-26 11:50:38.309633 | timeDiff: 5184000.0005784 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-27 09:50:38.309 | timeMax: 2024-07-26 09:50:38.31 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-27 14:21:46.189037 | timeMax: 2024-07-26 14:21:46.189665 | timeDiff: 5184000.00062776 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 884 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-27 12:21:46.18904 | timeMax: 2024-07-26 12:21:46.18966 | timeDiff: 5184000.00061989 nFacets: 4 nrow dataFiltered(): 884 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-27 12:21:46.189 | timeMax: 2024-07-26 12:21:46.19 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 884 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... p35849/Proteomics/FUSION_2/analytic_20240723/20240723_C35849_029_autoQC03dda.raw NA p35849/Proteomics/FUSION_2/analytic_20240723/20240723_C35849_029_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-27 14:40:46.993032 | timeMax: 2024-07-26 14:40:46.993825 | timeDiff: 5184000.0007937 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-27 12:40:46.993 | timeMax: 2024-07-26 12:40:46.994 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1952 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 507 using 'ggh4x' package ... NA p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240725_038_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-27 14:45:36.922467 | timeMax: 2024-07-26 14:45:36.923241 | timeDiff: 5184000.00077367 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-27 12:45:36.92247 | timeMax: 2024-07-26 12:45:36.92324 | timeDiff: 5184000.00077009 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-27 12:45:36.922 | timeMax: 2024-07-26 12:45:36.923 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... NA nFacets: 2 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240719_038_autoQC03dda.raw p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240719_038_autoQC03dda.raw p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240719_038_autoQC03dda.raw NA nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-27 12:45:36.922 | timeMax: 2024-07-26 14:46:41.983144 | timeDiff: 5184065.06114411 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-27 12:45:36.922 | timeMax: 2024-07-26 12:46:41.983 | timeDiff: 5184065.06100011 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-28 12:46:44.127 | timeMax: 2024-07-26 12:46:41.983 | timeDiff: 23500797.8559999 nFacets: 4 nrow dataFiltered(): 3692 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 846 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-08-02 12:46:48.802 | timeMax: 2024-07-26 12:46:41.983 | timeDiff: 31017593.181 nFacets: 4 nrow dataFiltered(): 5148 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 846 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240212_032_autoQC03dda.raw NA p34061/Proteomics/LUMOS_1/analytic_20240126/20240126_C34061_012_autoQC03dda.raw NA p32990/Proteomics/LUMOS_1/analytic_20231013/20231013_C32990_008_autoQC4L.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240715_05_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240715_05_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240715_05_autoQC03dda.raw plotClick: NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240715_05_autoQC03dda.raw NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240715_04_autoQC03dia.raw nrow dataFiltered(): 846 using 'ggh4x' package ... nrow dataFiltered(): 846 using 'ggh4x' package ... nrow dataFiltered(): 846 using 'ggh4x' package ... nrow dataFiltered(): 846 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-12-23 12:47:31.48 | timeMax: 2024-07-26 12:46:41.983 | timeDiff: 18662350.503 nFacets: 4 nrow dataFiltered(): 2808 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 684 using 'ggh4x' package ... nrow dataFiltered(): 684 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-15 13:09:18.112 | timeMax: 2024-07-26 12:46:41.983 | timeDiff: 21944243.8710001 nFacets: 4 nrow dataFiltered(): 3380 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 846 using 'ggh4x' package ... NA nrow dataFiltered(): 846 using 'ggh4x' package ... nrow dataFiltered(): 846 using 'ggh4x' package ... p34007/Proteomics/LUMOS_1/roschi_20240129_YEAST_DIA_insol/20240129_015_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-27 15:10:13.849384 | timeMax: 2024-07-26 15:10:13.850919 | timeDiff: 5184000.00153542 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 2 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 507 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-27 13:10:13.84938 | timeMax: 2024-07-26 13:10:13.85092 | timeDiff: 5184000.00154018 nFacets: 2 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-05-27 13:10:13.849 | timeMax: 2024-07-26 13:10:13.851 | timeDiff: 5184000.00200009 nFacets: 2 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-27 13:10:13.849 | timeMax: 2024-07-26 15:10:20.498509 | timeDiff: 5184006.64950919 nFacets: 2 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-27 13:10:13.849 | timeMax: 2024-07-26 13:10:20.499 | timeDiff: 5184006.6500001 nFacets: 2 nrow dataFiltered(): 507 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-30 13:10:22.682 | timeMax: 2024-07-26 13:10:20.499 | timeDiff: 23327997.8170002 nFacets: 3 nrow dataFiltered(): 2223 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1260 using 'ggh4x' package ... nrow dataFiltered(): 1260 using 'ggh4x' package ... nrow dataFiltered(): 1260 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-22 13:10:26.598 | timeMax: 2024-07-26 13:10:20.499 | timeDiff: 21340793.901 nFacets: 3 nrow dataFiltered(): 1989 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1170 using 'ggh4x' package ... nrow dataFiltered(): 1170 using 'ggh4x' package ... nrow dataFiltered(): 1170 using 'ggh4x' package ... nrow dataFiltered(): 1170 using 'ggh4x' package ... NA input timeRange: 31536000 | timeMin: 2023-12-30 13:09:23.525 | timeMax: 2024-07-26 12:46:41.983 | timeDiff: 18056238.4579999 nFacets: 4 nrow dataFiltered(): 2808 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 684 using 'ggh4x' package ... nrow dataFiltered(): 684 using 'ggh4x' package ... nrow dataFiltered(): 684 using 'ggh4x' package ... nrow dataFiltered(): 684 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-27 15:21:59.105728 | timeMax: 2024-07-26 15:21:59.10717 | timeDiff: 5184000.00144219 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-27 13:21:59.106 | timeMax: 2024-07-26 13:21:59.107 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1952 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). p35882/Proteomics/LUMOS_2/analytic_20240726/20240726_C35882_001_autoQC01.raw p35882/Proteomics/LUMOS_2/analytic_20240726/20240726_C35882_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-07-20 22:29:17.954875 | timeMax: 2024-07-27 22:29:17.954925 | timeDiff: 604800.000050068 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-28 22:29:27.33701 | timeMax: 2024-07-27 22:29:27.337576 | timeDiff: 5184000.00056601 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1952 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-28 20:29:27.337 | timeMax: 2024-07-27 20:29:27.338 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1952 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 896 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1952 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 15552000 | timeMin: 2024-05-28 20:29:27.337 | timeMax: 2024-07-27 22:30:06.632485 | timeDiff: 5184039.29548478 nFacets: 4 nrow dataFiltered(): 1952 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 15552000 | timeMin: 2024-05-28 20:29:27.337 | timeMax: 2024-07-27 20:30:06.632 | timeDiff: 5184039.29500008 nFacets: 4 nrow dataFiltered(): 1952 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:08.00101 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183999.99998999 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:14.446132 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183993.55486751 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:14.446 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183993.55499983 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:16.309479 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183991.69152117 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:16.309 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183991.69199991 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:18.161026 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183989.83997416 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:18.161 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183989.83999991 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:20.033693 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183987.96730709 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:20.034 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183987.96700001 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:21.865383 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183986.13561726 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:21.865 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183986.13599992 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:23.888528 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183984.11247206 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:23.889 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183984.11199999 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:26.011213 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183981.98978734 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:26.011 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183981.99000001 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:28.220456 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183979.78054357 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:28.22 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183979.7809999 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:30.38392 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183977.61708021 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:30.384 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183977.61699986 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:32.582701 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183975.41829872 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:32.583 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183975.41799998 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:34.77505 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183973.22595024 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:34.775 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183973.22599983 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:36.839864 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183971.16113544 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:36.84 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183971.16100001 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:38.777227 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183969.223773 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:38.777 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183969.22399998 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:40.714401 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183967.2865994 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:40.714 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183967.28699994 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:42.653224 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183965.34777617 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:42.653 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183965.34799981 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:44.670264 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183963.33073568 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:44.67 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183963.33099985 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:46.702814 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183961.29818583 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:46.703 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183961.29799986 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:48.754053 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183959.24694657 Warning in observe() : timeDiff is higher than timeRange nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:48.754 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183959.24699998 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:50.798284 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183957.20271611 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:50.798 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183957.20299983 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:53.428076 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183954.5729239 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:53.428 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183954.57299995 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:55.504571 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183952.4964292 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:55.505 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183952.49599981 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:57.55028 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183950.45072007 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:57.55 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183950.45099998 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:30:59.6572 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183948.34380007 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 20:30:59.657 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183948.34399986 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 15552000 | timeMin: 2024-01-29 21:31:01.735926 | timeMax: 2024-03-29 20:30:08.001 | timeDiff: 5183946.26507378 input timeRange: 31536000 | timeMin: 2024-01-29 21:31:01.735926 | timeMax: 2024-07-27 22:31:01.500174 | timeDiff: 15551999.7642474 nFacets: 4 nrow dataFiltered(): 4784 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 31536000 | timeMin: 2024-01-29 20:31:01.736 | timeMax: 2024-07-27 20:31:01.5 | timeDiff: 15551999.7639999 nFacets: 4 nrow dataFiltered(): 4784 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 31536000 | timeMin: 2023-12-27 20:31:03.007 | timeMax: 2024-07-27 20:31:01.5 | timeDiff: 18403198.493 nFacets: 4 nrow dataFiltered(): 5504 using 'ggh4x' package ... Warning: Removed 21 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-11-22 20:31:11.824 | timeMax: 2024-07-27 20:31:01.5 | timeDiff: 21427189.6760001 nFacets: 4 nrow dataFiltered(): 6288 using 'ggh4x' package ... Warning: Removed 28 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-10-07 20:31:16.29 | timeMax: 2024-07-27 20:31:01.5 | timeDiff: 25401585.21 nFacets: 4 nrow dataFiltered(): 7424 using 'ggh4x' package ... Warning: Removed 28 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-09-08 20:31:19.84 | timeMax: 2024-07-27 20:31:01.5 | timeDiff: 27907181.6600001 nFacets: 4 nrow dataFiltered(): 8192 using 'ggh4x' package ... Warning: Removed 32 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 7296 using 'ggh4x' package ... Warning: Removed 16 rows containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_11_autoQC01.raw NA vals$rawrr: TRUE p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_001_autoQC01.raw p34809/Proteomics/LUMOS_1/roschi_20240403_mouse_mod_DDA/20240403_005a_autoQC01.raw p34007/Proteomics/LUMOS_1/roschi_20240129_YEAST_DIA_insol/20240129_001_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20230803_autoQC/20230918_32_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20230803_autoQC/20230918_32_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20230803_autoQC/20230918_32_autoQC01.raw Plotting chromatograms ... Read 22032 items NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 864 using 'ggh4x' package ... nrow dataFiltered(): 4576 using 'ggh4x' package ... vals$rawrr: TRUE NA NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw Plotting chromatograms ... Read 22032 items plotClick: p32808/Proteomics/LUMOS_1/analytic_20230920/20230920_C32808_008_autoQC4L.raw input timeRange: 31536000 | timeMin: 2023-07-28 20:33:26.17276 | timeMax: 2024-06-15 20:33:26.173 | timeDiff: 27907200.0002401 nFacets: 4 nrow dataFiltered(): 4992 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 702 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-07-28 23:35:36.378551 | timeMax: 2024-06-15 20:33:26.173 | timeDiff: 27903469.7944493 nFacets: 4 nrow dataFiltered(): 4992 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 702 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-07-28 21:35:36.379 | timeMax: 2024-06-15 20:33:26.173 | timeDiff: 27903469.7940001 nFacets: 4 nrow dataFiltered(): 4992 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 702 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2023-07-28 21:35:36.379 | timeMax: 2024-07-27 22:35:41.370238 | timeDiff: 31532404.9912384 nFacets: 4 nrow dataFiltered(): 5200 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 864 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2023-07-28 21:35:36.379 | timeMax: 2024-07-27 20:35:41.37 | timeDiff: 31532404.9909999 nFacets: 4 nrow dataFiltered(): 5200 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 864 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2022-08-30 20:35:43.352 | timeMax: 2023-08-30 20:35:43.352 | timeDiff: 31536000 nFacets: 5 nrow dataFiltered(): 7111 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 0 input timeRange: 63072000 | timeMin: 2022-08-30 20:35:43.352 | timeMax: 2023-12-16 20:35:47.752 | timeDiff: 40867204.4000001 nFacets: 5 nrow dataFiltered(): 8879 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2022-08-30 20:35:43.352 | timeMax: 2024-03-28 20:35:53.171 | timeDiff: 49766409.819 nFacets: 5 nrow dataFiltered(): 10699 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2022-08-30 20:35:43.352 | timeMax: 2024-06-06 20:35:58.499 | timeDiff: 55814415.1470001 nFacets: 5 nrow dataFiltered(): 11531 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 648 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2022-08-30 20:35:43.352 | timeMax: 2024-07-27 20:36:01.69287 | timeDiff: 60220818.3408701 nFacets: 5 nrow dataFiltered(): 11895 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 864 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2022-08-30 20:35:43.352 | timeMax: 2024-07-27 20:36:01.693 | timeDiff: 60220818.3410001 nFacets: 5 nrow dataFiltered(): 11895 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 864 using 'ggh4x' package ... NA p27242/Proteomics/LUMOS_1/ulianaf_20231009/20231009_018_autoQC4L.raw plotClick: fn has changed to /srv/www/htdocs//p27242/Proteomics/LUMOS_1/ulianaf_20231009/20231009_018_autoQC4L.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-30 00:26:01.565382 | timeMax: 2024-07-29 00:26:01.565956 | timeDiff: 5184000.00057459 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-29 22:26:01.565 | timeMax: 2024-07-28 22:26:01.566 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-30 00:32:49.439367 | timeMax: 2024-07-29 00:32:49.440328 | timeDiff: 5184000.0009613 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-29 22:32:49.439 | timeMax: 2024-07-28 22:32:49.44 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-30 08:14:13.457576 | timeMax: 2024-07-29 08:14:13.458143 | timeDiff: 5184000.00056791 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-30 06:14:13.458 | timeMax: 2024-07-29 06:14:13.458 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-07-22 08:14:39.542581 | timeMax: 2024-07-29 08:14:39.542622 | timeDiff: 604800.00004077 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-30 08:52:47.313876 | timeMax: 2024-07-29 08:52:47.314439 | timeDiff: 5184000.00056291 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-30 06:52:47.314 | timeMax: 2024-07-29 06:52:47.314 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-30 10:51:01.978628 | timeMax: 2024-07-29 10:51:01.979198 | timeDiff: 5184000.0005703 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-05-30 08:51:01.979 | timeMax: 2024-07-29 08:51:01.979 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... p35841/Proteomics/EXPLORIS_1/analytic_20240725/20240725_C35841_014_autoQC03dda.raw Execution halted