Listening on http://127.0.0.1:45169 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-05-31 14:59:30.886209 | timeMax: 2024-07-30 14:59:30.886823 | timeDiff: 5184000.00061369 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-05-31 12:59:30.886 | timeMax: 2024-07-30 12:59:30.887 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 784 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 15552000 | timeMin: 2024-05-31 12:59:30.886 | timeMax: 2024-07-30 14:59:41.820612 | timeDiff: 5184010.93461227 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 15552000 | timeMin: 2024-05-31 12:59:30.886 | timeMax: 2024-07-30 12:59:41.821 | timeDiff: 5184010.93500018 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240708_001_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 533 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240708_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240708_002_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-01 12:11:55.573121 | timeMax: 2024-07-31 12:11:55.573683 | timeDiff: 5184000.00056219 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-01 10:11:55.573 | timeMax: 2024-07-31 10:11:55.574 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 91 using 'ggh4x' package ... NA p3000/Proteomics/TIMSTOF_1/spfammatter_20240729/zip/20240729_004_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/TIMSTOF_1/spfammatter_20240729/zip/20240729_004_autoQC03dda.d.zip NA p35935/Proteomics/TIMSTOF_1/analytic_20240730/zip/20240730_005_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p35935/Proteomics/TIMSTOF_1/analytic_20240730/zip/20240730_005_autoQC03dia.d.zip nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-02 10:31:36.207945 | timeMax: 2024-08-01 10:31:36.208512 | timeDiff: 5184000.00056696 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-06-02 08:31:36.208 | timeMax: 2024-08-01 08:31:36.209 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... NA p35657/Proteomics/TIMSTOF_1/jonas_20240731_JE_B0604/zip/20240731_000_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-02 12:55:42.097433 | timeMax: 2024-08-01 12:55:42.097999 | timeDiff: 5184000.00056577 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-06-02 10:55:42.097 | timeMax: 2024-08-01 10:55:42.098 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 NA nFacets: 1 nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240726_10_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 10:41:31.104156 | timeMax: 2024-08-05 10:41:31.104721 | timeDiff: 5184000.00056481 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-06 08:41:31.10416 | timeMax: 2024-08-05 08:41:31.10472 | timeDiff: 5184000.00056005 nFacets: 4 nrow dataFiltered(): 832 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-06 08:41:31.104 | timeMax: 2024-08-05 08:41:31.105 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 832 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 15552000 | timeMin: 2024-06-06 12:26:15.143332 | timeMax: 2024-08-05 12:26:15.144635 | timeDiff: 5184000.00130272 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 15552000 | timeMin: 2024-06-06 10:26:15.143 | timeMax: 2024-08-05 10:26:15.145 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 672 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240715_05_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_06_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 12:34:26.574593 | timeMax: 2024-08-05 12:34:26.575153 | timeDiff: 5184000.00056028 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-06 10:34:26.575 | timeMax: 2024-08-05 10:34:26.575 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p35806/Proteomics/EXPLORIS_2/analytic_20240731/20240731_C35806_012_autoQC01.raw NA plotClick: fn has changed to /srv/www/htdocs//NA nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_007_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 12:51:37.978739 | timeMax: 2024-08-05 12:51:37.979312 | timeDiff: 5184000.00057316 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1696 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-06 10:51:37.979 | timeMax: 2024-08-05 10:51:37.979 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1696 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240719_007_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 15:10:55.226388 | timeMax: 2024-08-05 15:10:55.226956 | timeDiff: 5184000.00056839 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-06 13:10:55.226 | timeMax: 2024-08-05 13:10:55.227 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20240805/20240805_001_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 455 using 'ggh4x' package ... NA p35882/Proteomics/LUMOS_2/analytic_20240726/20240726_C35882_014_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 15:12:35.416117 | timeMax: 2024-08-05 15:12:35.416689 | timeDiff: 5184000.0005722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-06 13:12:35.416 | timeMax: 2024-08-05 13:12:35.417 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/LUMOS_2/analytics_20240805/20240805_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240805/20240805_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 15:49:15.870743 | timeMax: 2024-08-05 15:49:15.871317 | timeDiff: 5184000.00057411 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 2 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 455 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-06 13:49:15.87074 | timeMax: 2024-08-05 13:49:15.87132 | timeDiff: 5184000.00058007 nFacets: 2 nrow dataFiltered(): 455 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-06 13:49:15.871 | timeMax: 2024-08-05 13:49:15.871 | timeDiff: 5184000 nFacets: 2 nrow dataFiltered(): 455 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... p35882/Proteomics/LUMOS_2/analytic_20240726/20240726_C35882_014_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 16:13:10.914369 | timeMax: 2024-08-05 16:13:10.914937 | timeDiff: 5184000.00056815 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-06 14:13:10.914 | timeMax: 2024-08-05 14:13:10.915 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/LUMOS_2/roschi_20240723_K652_DDA_Test/20240727_012_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 481 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240805/20240805_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240805/20240805_002_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 16:21:37.348 | timeMax: 2024-08-05 16:21:37.348569 | timeDiff: 5184000.00056863 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-06 14:21:37.348 | timeMax: 2024-08-05 14:21:37.349 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1712 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 16:35:49.736058 | timeMax: 2024-08-05 16:35:49.736624 | timeDiff: 5184000.00056505 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 351 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-06 14:35:49.73606 | timeMax: 2024-08-05 14:35:49.73662 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 input timeRange: 7776000 | timeMin: 2024-06-06 14:35:49.736 | timeMax: 2024-08-05 14:35:49.737 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nFacets: 4 nrow dataFiltered(): 832 using 'ggh4x' package ... nFacets: 1 NA vals$rawrr: TRUE vals$rawrr: FALSE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 16:36:29.67817 | timeMax: 2024-08-05 16:36:29.678744 | timeDiff: 5184000.00057364 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-06 14:36:29.678 | timeMax: 2024-08-05 14:36:29.679 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 17:10:39.747533 | timeMax: 2024-08-05 17:10:39.748113 | timeDiff: 5184000.00057983 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-06 15:10:39.748 | timeMax: 2024-08-05 15:10:39.748 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20240805/20240805_004_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 481 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240805/20240805_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240805/20240805_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-06 21:57:14.463303 | timeMax: 2024-08-05 21:57:14.463872 | timeDiff: 5184000.00056934 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-06 19:57:14.463 | timeMax: 2024-08-05 19:57:14.464 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 656 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw NA nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 08:52:14.042335 | timeMax: 2024-08-06 08:52:14.042905 | timeDiff: 5184000.00056958 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-07 06:52:14.042 | timeMax: 2024-08-06 06:52:14.043 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 656 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 09:15:32.258782 | timeMax: 2024-08-06 09:15:32.259367 | timeDiff: 5184000.00058436 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-07 07:15:32.25878 | timeMax: 2024-08-06 07:15:32.25937 | timeDiff: 5184000.00059009 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-07 07:15:32.259 | timeMax: 2024-08-06 07:15:32.259 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_04_autoQC03dda.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_04_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_04_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 12:48:26.358853 | timeMax: 2024-08-06 12:48:26.359536 | timeDiff: 5184000.00068259 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-07 10:48:26.359 | timeMax: 2024-08-06 10:48:26.36 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 15:52:10.333206 | timeMax: 2024-08-06 15:52:10.333777 | timeDiff: 5184000.00057125 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-07 13:52:10.333 | timeMax: 2024-08-06 13:52:10.334 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 672 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... vals$rawrr: TRUE NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-07 15:54:39.112461 | timeMax: 2024-08-06 15:54:39.113026 | timeDiff: 5184000.00056529 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-07 13:54:39.112 | timeMax: 2024-08-06 13:54:39.113 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-08 10:41:25.370172 | timeMax: 2024-08-07 10:41:25.370748 | timeDiff: 5184000.00057626 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-08 08:41:25.37 | timeMax: 2024-08-07 08:41:25.371 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 640 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_03_autoQC03dia.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_03_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_06_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_06_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_06_autoQC03dia.raw Plotting chromatograms ... Plotting chromatograms ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_11_autoQC03dia_Flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_11_autoQC03dia_Flex.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_11_autoQC03dia_Flex.raw Plotting chromatograms ... NA Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_12_autoQC03dda_Flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_12_autoQC03dda_Flex.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_12_autoQC03dda_Flex.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_12_autoQC03dda_Flex.raw plotClick: NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_12_autoQC03dda_Flex.raw plotClick: NA Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_12_autoQC03dda_Flex.raw Plotting chromatograms ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_02_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_02_autoQC01.raw NA nrow dataFiltered(): 640 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_02_autoQC01.raw nrow dataFiltered(): 640 using 'ggh4x' package ... nrow dataFiltered(): 640 using 'ggh4x' package ... NA nrow dataFiltered(): 640 using 'ggh4x' package ... nrow dataFiltered(): 640 using 'ggh4x' package ... nrow dataFiltered(): 640 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_02_autoQC01.raw plotClick: vals$rawDiag: TRUE plotChargeState reading index for 20240807_02_autoQC01.raw... NA plotTicBasepeak fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-08 11:21:58.889596 | timeMax: 2024-08-07 11:21:58.890715 | timeDiff: 5184000.00111985 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 640 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-08 09:21:58.89 | timeMax: 2024-08-07 09:21:58.891 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 640 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-08 12:58:52.383188 | timeMax: 2024-08-07 12:58:52.383836 | timeDiff: 5184000.00064754 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-08 10:58:52.383 | timeMax: 2024-08-07 10:58:52.384 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 672 using 'ggh4x' package ... NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_006_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-09 08:50:25.056793 | timeMax: 2024-08-08 08:50:25.057359 | timeDiff: 5184000.00056577 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-09 06:50:25.05679 | timeMax: 2024-08-08 06:50:25.05736 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 416 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-06-09 06:50:25.057 | timeMax: 2024-08-08 06:50:25.057 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 416 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 plotClick: fn has changed to /srv/www/htdocs//p36008/Proteomics/QEXACTIVE_1/analytic_20240807/20240807_C36008_007_autoQC03dda.raw p36008/Proteomics/QEXACTIVE_1/analytic_20240807/20240807_C36008_007_autoQC03dda.raw p35964/Proteomics/QEXACTIVE_1/analytic_20240806/20240806_C35964_006_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35964/Proteomics/QEXACTIVE_1/analytic_20240806/20240806_C35964_006_autoQC03dda.raw nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 40 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 5 rows containing missing values or values outside the scale range (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-09 13:50:11.474684 | timeMax: 2024-08-08 13:50:11.475258 | timeDiff: 5184000.00057435 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-09 11:50:11.475 | timeMax: 2024-08-08 11:50:11.475 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-09 16:30:14.305462 | timeMax: 2024-08-08 16:30:14.306035 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-09 14:30:14.305 | timeMax: 2024-08-08 14:30:14.306 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240808_02_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240808_02_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240808_02_autoQC01.raw Plotting chromatograms ... Read 22032 items p35272/Proteomics/LUMOS_1/analytic_20240617/20240617_C35272_006_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-10 08:14:59.806709 | timeMax: 2024-08-09 08:14:59.807288 | timeDiff: 5184000.0005784 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 752 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-10 06:14:59.807 | timeMax: 2024-08-09 06:14:59.807 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-10 08:31:39.512757 | timeMax: 2024-08-09 08:31:39.513324 | timeDiff: 5184000.0005672 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-10 06:31:39.513 | timeMax: 2024-08-09 06:31:39.513 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240808_04_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-10 09:15:10.396156 | timeMax: 2024-08-09 09:15:10.396758 | timeDiff: 5184000.00060129 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-12 15:20:48.640769 | timeMax: 2024-08-11 15:20:48.641334 | timeDiff: 5184000.00056529 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-12 13:20:48.641 | timeMax: 2024-08-11 13:20:48.641 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA p35868/Proteomics/TIMSTOF_1/lkunz_20240806_/zip/20240806_018_autoQC03dia_1.d.zip NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 09:07:01.200825 | timeMax: 2024-08-12 09:07:01.201396 | timeDiff: 5184000.00057054 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-06-13 07:07:01.201 | timeMax: 2024-08-12 07:07:01.201 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 09:38:21.350525 | timeMax: 2024-08-12 09:38:21.351381 | timeDiff: 5184000.00085568 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 07:38:21.35053 | timeMax: 2024-08-12 07:38:21.35138 | timeDiff: 5184000.00084972 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 07:38:21.351 | timeMax: 2024-08-12 07:38:21.351 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_067_autoQC03dda.raw NA p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_067_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 10:50:29.719018 | timeMax: 2024-08-12 10:50:29.719592 | timeDiff: 5184000.00057483 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-13 08:50:29.719 | timeMax: 2024-08-12 08:50:29.72 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 455 using 'ggh4x' package ... p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_041_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/ackle_20240806_NL21/20240806_041_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 13:52:15.201576 | timeMax: 2024-08-12 13:52:15.202169 | timeDiff: 5184000.00059247 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 14:31:45.854854 | timeMax: 2024-08-12 14:31:45.855559 | timeDiff: 5184000.00070477 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-06-13 12:31:45.855 | timeMax: 2024-08-12 12:31:45.856 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 0 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). NA p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_066_autoQC01.raw NA p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_001_autoQC01.raw NA p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_001_autoQC01.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_059_autoQC01.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_059_autoQC01.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_059_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... NA p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_067_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_067_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 2 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-13 17:24:42.392518 | timeMax: 2024-08-12 17:24:42.3931 | timeDiff: 5184000.00058246 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 15:24:42.39252 | timeMax: 2024-08-12 15:24:42.3931 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-13 15:24:42.393 | timeMax: 2024-08-12 15:24:42.393 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-14 13:51:23.57681 | timeMax: 2024-08-13 13:51:23.577383 | timeDiff: 5184000.0005722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-14 11:51:23.577 | timeMax: 2024-08-13 11:51:23.577 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01.raw p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_008_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_008_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01.raw NA p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_008_autoQC01.raw p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_008_autoQC01.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_052_autoQC01.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_052_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01.raw NA p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_008_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_010_autoQC01.raw p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_010_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_010_autoQC01.raw Reading raw file: /srv/www/htdocs//p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_010_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw Reading raw file: /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-14 14:14:55.822379 | timeMax: 2024-08-13 14:14:55.822945 | timeDiff: 5184000.00056601 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-14 12:14:55.822 | timeMax: 2024-08-13 12:14:55.823 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values or values outside the scale range (`geom_point()`). Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 276210 autoQC01 module APEX long nrow: 840 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 22 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). NA p36038/Proteomics/QEXACTIVE_1/analytic_20240809/20240809_C36038_012_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 390 using 'ggh4x' package ... NA p36038/Proteomics/QEXACTIVE_1/analytic_20240809/20240809_C36038_013_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 15552000 | timeMin: 2024-06-14 15:05:05.99057 | timeMax: 2024-08-13 15:05:05.991137 | timeDiff: 5184000.00056744 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-06-14 13:05:05.991 | timeMax: 2024-08-13 13:05:05.991 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240813_02_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240813_02_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240813_02_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-15 15:08:43.579551 | timeMax: 2024-08-14 15:08:43.580127 | timeDiff: 5184000.00057626 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-15 13:08:43.58 | timeMax: 2024-08-14 13:08:43.58 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 09:13:27.493604 | timeMax: 2024-08-15 09:13:27.494177 | timeDiff: 5184000.00057316 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-16 07:13:27.494 | timeMax: 2024-08-15 07:13:27.494 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 09:25:03.375868 | timeMax: 2024-08-15 09:25:03.376435 | timeDiff: 5184000.00056696 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-16 07:25:03.376 | timeMax: 2024-08-15 07:25:03.376 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 11:37:53.314151 | timeMax: 2024-08-15 11:37:53.314723 | timeDiff: 5184000.00057149 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-16 09:37:53.314 | timeMax: 2024-08-15 09:37:53.315 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). NA p30646/Proteomics/EXPLORIS_1/gnarduzzi_20240703/20240703_019_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_015_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_015_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_015_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw Reading raw file: /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw Reading raw file: /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw Plotting chromatograms ... Read 22032 items p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw Reading raw file: /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 14:27:23.597569 | timeMax: 2024-08-15 14:27:23.598137 | timeDiff: 5184000.00056815 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-16 12:27:23.598 | timeMax: 2024-08-15 12:27:23.598 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p35996/Proteomics/LUMOS_2/analytic_20240815/20240814_C35996_001_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... NA NA p35996/Proteomics/LUMOS_2/analytic_20240815/20240814_C35996_002_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35996/Proteomics/LUMOS_2/analytic_20240815/20240814_C35996_002_autoQC03dia.raw p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_019_autoQC01.raw p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_019_autoQC01.raw p3189/Proteomics/EXPLORIS_1/kbende_20240712/20240712_019_autoQC01.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_052_autoQC01.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_045_autoQC01.raw p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_008_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw p25334/Proteomics/EXPLORIS_1/dlesli_20240715_DLP250/20240627_013_autoQC01.raw NA p25334/Proteomics/EXPLORIS_1/dlesli_20240715_DLP250/20240627_018_autoQC01.raw NA p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_001_autoQC01.raw p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_030_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_015_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_015_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw plotClick: plotClick: plotClick: plotClick: plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 16:33:09.645684 | timeMax: 2024-08-15 16:33:09.646563 | timeDiff: 5184000.00087976 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-16 14:33:09.646 | timeMax: 2024-08-15 14:33:09.647 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_015_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 16:46:33.164049 | timeMax: 2024-08-15 16:46:33.16484 | timeDiff: 5184000.00079012 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-16 14:46:33.164 | timeMax: 2024-08-15 14:46:33.165 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 16:46:48.174138 | timeMax: 2024-08-15 16:46:48.175009 | timeDiff: 5184000.00087047 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-16 14:46:48.174 | timeMax: 2024-08-15 14:46:48.175 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 16:47:10.612883 | timeMax: 2024-08-15 16:47:10.614142 | timeDiff: 5184000.00125837 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-16 14:47:10.613 | timeMax: 2024-08-15 14:47:10.614 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 16:48:30.539645 | timeMax: 2024-08-15 16:48:30.540417 | timeDiff: 5184000.00077224 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-16 14:48:30.54 | timeMax: 2024-08-15 14:48:30.54 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 16:50:20.862188 | timeMax: 2024-08-15 16:50:20.862969 | timeDiff: 5184000.00078082 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-16 14:50:20.862 | timeMax: 2024-08-15 14:50:20.863 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 16:54:55.455341 | timeMax: 2024-08-15 16:54:55.456363 | timeDiff: 5184000.0010221 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-16 14:54:55.455 | timeMax: 2024-08-15 14:54:55.456 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-16 19:56:40.681118 | timeMax: 2024-08-15 19:56:40.681866 | timeDiff: 5184000.00074768 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-16 17:56:40.681 | timeMax: 2024-08-15 17:56:40.682 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-17 08:40:18.356665 | timeMax: 2024-08-16 08:40:18.357243 | timeDiff: 5184000.00057745 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-17 06:40:18.357 | timeMax: 2024-08-16 06:40:18.357 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-17 10:55:24.277363 | timeMax: 2024-08-16 10:55:24.277933 | timeDiff: 5184000.00056934 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-17 08:55:24.277 | timeMax: 2024-08-16 08:55:24.278 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_015_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Cleaning/20240813_000_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Cleaning/20240813_000_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Cleaning/20240813_000_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA/20240813_022_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw NA p35615/Proteomics/EXPLORIS_1/analytic_20240812/20240812_C35615_008_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Cleaning/20240813_002_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Cleaning/20240813_001_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Cleaning/20240813_002_autoQC01.raw p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_000_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-17 11:49:32.809103 | timeMax: 2024-08-16 11:49:32.80967 | timeDiff: 5184000.0005672 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-17 09:49:32.809 | timeMax: 2024-08-16 09:49:32.81 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Cleaning/20240813_003_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-17 11:53:59.494982 | timeMax: 2024-08-16 11:53:59.495557 | timeDiff: 5184000.00057483 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-17 09:53:59.495 | timeMax: 2024-08-16 09:53:59.496 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Cleaning/20240813_003_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Cleaning/20240813_003_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-17 12:03:52.224295 | timeMax: 2024-08-16 12:03:52.224867 | timeDiff: 5184000.00057173 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-17 10:03:52.224 | timeMax: 2024-08-16 10:03:52.225 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Cleaning/20240813_003_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-17 12:30:03.326761 | timeMax: 2024-08-16 12:30:03.327397 | timeDiff: 5184000.00063539 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-06-17 10:30:03.327 | timeMax: 2024-08-16 10:30:03.327 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). NA p36038/Proteomics/QEXACTIVE_1/analytic_20240809/20240809_C36038_012_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-17 14:03:03.124085 | timeMax: 2024-08-16 14:03:03.124684 | timeDiff: 5184000.00059867 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-06-17 12:03:03.124 | timeMax: 2024-08-16 12:03:03.125 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). NA p36038/Proteomics/QEXACTIVE_1/analytic_20240809/20240809_C36038_012_autoQC01.raw NA p35909/Proteomics/QEXACTIVE_1/analytic_20240816/20240816_C35909_001_autoQC01.raw NA p35909/Proteomics/QEXACTIVE_1/analytic_20240816/20240816_C35909_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-17 14:25:47.658358 | timeMax: 2024-08-16 14:25:47.65893 | timeDiff: 5184000.00057173 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-17 12:25:47.658 | timeMax: 2024-08-16 12:25:47.659 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-06-17 12:25:47.658 | timeMax: 2024-08-16 14:25:58.992538 | timeDiff: 5184011.33453774 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-06-17 12:25:47.658 | timeMax: 2024-08-16 12:25:58.993 | timeDiff: 5184011.33500004 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-10 12:26:00.483 | timeMax: 2024-08-16 12:25:58.993 | timeDiff: 24191998.51 nFacets: 4 nrow dataFiltered(): 6112 using 'ggh4x' package ... Warning: Removed 25 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-17 14:26:10.2457 | timeMax: 2024-08-16 14:26:10.246427 | timeDiff: 5184000.00072718 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-17 12:26:10.246 | timeMax: 2024-08-16 12:26:10.246 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-17 23:28:21.079837 | timeMax: 2024-08-16 23:28:21.080409 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-17 21:28:21.08 | timeMax: 2024-08-16 21:28:21.08 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). p27261/Proteomics/EXPLORIS_1/baytekbarbini_20240806/20240806_008_autoQC01.raw p35387/Proteomics/EXPLORIS_1/analytic_20240616/20240616_C35387_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-18 09:05:18.786011 | timeMax: 2024-08-17 09:05:18.786584 | timeDiff: 5184000.00057387 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-18 07:05:18.786 | timeMax: 2024-08-17 07:05:18.787 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-18 11:51:20.365844 | timeMax: 2024-08-17 11:51:20.366429 | timeDiff: 5184000.00058484 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-18 09:51:20.366 | timeMax: 2024-08-17 09:51:20.366 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 688 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240816_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240816_03_autoQC03dia.raw plotClick: NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw vals$rawDiag: TRUE plotChargeState reading index for 20240731_03_autoQC03dia.raw... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw plotClick: NA plotInjectionTime p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240816_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240816_03_autoQC03dia.raw plotChargeState reading index for 20240816_03_autoQC03dia.raw... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240816_03_autoQC03dia.raw plotClick: plotInjectionTime NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-18 12:53:13.257801 | timeMax: 2024-08-17 12:53:13.258381 | timeDiff: 5184000.00058007 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-18 10:53:13.258 | timeMax: 2024-08-17 10:53:13.258 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_point()`). p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA_rr/20240813_0081_autoQC01.raw NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA_rr/20240813_0081_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA_rr/20240813_0081_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-18 18:18:18.875095 | timeMax: 2024-08-17 18:18:18.875669 | timeDiff: 5184000.00057435 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-06-18 16:18:18.875 | timeMax: 2024-08-17 16:18:18.876 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-18 19:50:49.995402 | timeMax: 2024-08-17 19:50:49.995975 | timeDiff: 5184000.00057292 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 736 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-18 17:50:49.995 | timeMax: 2024-08-17 17:50:49.996 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_04_autoQC03dda.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240817_03_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240816_03_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240817_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240817_03_autoQC03dia.raw NA vals$rawDiag: TRUE p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240817_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240817_03_autoQC03dia.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawDiag-autoQC03-plot 1: runApp reading index for 20240817_03_autoQC03dia.raw... plotScanTime vals$rawrr: TRUE plotClick: plotClick: NA vals$rawrr: TRUE plotChargeState Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240817_03_autoQC03dia.raw Plotting chromatograms ... Read 22032 items vals$rawDiag: FALSE p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240817_03_autoQC03dia.raw plotClick: Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_03_autoQC03dia.raw NA input timeRange: 315360000 | timeMin: 2024-06-18 17:50:49.995 | timeMax: 2024-08-17 19:58:14.551337 | timeDiff: 5184444.55633759 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... Plotting chromatograms ... input timeRange: 315360000 | timeMin: 2024-06-18 17:50:49.995 | timeMax: 2024-08-17 17:58:14.551 | timeDiff: 5184444.55600023 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... NA input timeRange: 126144000 | timeMin: 2024-06-18 17:50:49.995 | timeMax: 2024-08-17 19:58:42.624857 | timeDiff: 5184472.62985754 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... input timeRange: 126144000 | timeMin: 2024-06-18 17:50:49.995 | timeMax: 2024-08-17 17:58:42.625 | timeDiff: 5184472.63000011 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_11_autoQC03dia_Flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... NA Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 342 using 'ggh4x' package ... input timeRange: 126144000 | timeMin: 2023-09-08 17:58:44.248 | timeMax: 2024-08-17 17:58:42.625 | timeDiff: 29721598.3770001 nFacets: 4 nrow dataFiltered(): 4680 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1062 using 'ggh4x' package ... nrow dataFiltered(): 1062 using 'ggh4x' package ... Plotting chromatograms ... p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... input timeRange: 126144000 | timeMin: 2023-09-08 18:01:33.177 | timeMax: 2024-08-17 17:58:42.625 | timeDiff: 29721429.448 nFacets: 4 nrow dataFiltered(): 4680 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1062 using 'ggh4x' package ... Plotting chromatograms ... input timeRange: 126144000 | timeMin: 2022-08-03 18:01:33.177 | timeMax: 2024-08-17 17:58:42.625 | timeDiff: 64367829.448 nFacets: 5 nrow dataFiltered(): 12363 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1062 using 'ggh4x' package ... input timeRange: 126144000 | timeMin: 2022-03-24 18:02:56.902 | timeMax: 2024-08-17 17:58:42.625 | timeDiff: 75772545.723 nFacets: 5 nrow dataFiltered(): 14560 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1062 using 'ggh4x' package ... input timeRange: 126144000 | timeMin: 2021-02-28 18:02:56.902 | timeMax: 2024-08-17 17:58:42.625 | timeDiff: 109382145.723 nFacets: 5 nrow dataFiltered(): 21450 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1062 using 'ggh4x' package ... nFacets: 3 nrow dataFiltered(): 10231 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1314 using 'ggh4x' package ... p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_002_S580219_K562_incl_iRT_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/roschi_20240723_K652_DDA_Test/20240727_012_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-19 11:53:00.462434 | timeMax: 2024-08-18 11:53:00.462998 | timeDiff: 5184000.0005641 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-19 09:53:00.462 | timeMax: 2024-08-18 09:53:00.463 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 07:54:50.564237 | timeMax: 2024-08-19 07:54:50.564835 | timeDiff: 5184000.00059772 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-20 05:54:50.564 | timeMax: 2024-08-19 05:54:50.565 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA_rr/20240813_031_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA_rr/20240813_031_autoQC03dda.raw plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA_rr/20240813_031_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA_rr/20240813_031_autoQC03dda.raw NA Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 09:46:10.824031 | timeMax: 2024-08-19 09:46:10.824699 | timeDiff: 5184000.00066805 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 960 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-20 07:46:10.824 | timeMax: 2024-08-19 07:46:10.825 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 11:13:01.762061 | timeMax: 2024-08-19 11:13:01.76264 | timeDiff: 5184000.00057983 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-06-20 09:13:01.76206 | timeMax: 2024-08-19 09:13:01.76264 | timeDiff: 5184000.00057983 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 13:44:25.669695 | timeMax: 2024-08-19 13:44:25.670259 | timeDiff: 5184000.00056362 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 11:44:25.6697 | timeMax: 2024-08-19 11:44:25.67026 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 11:44:25.67 | timeMax: 2024-08-19 11:44:25.67 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA_rr/20240813_031_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-20 14:44:55.650825 | timeMax: 2024-08-19 14:44:55.651396 | timeDiff: 5184000.00057125 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 12:44:55.65082 | timeMax: 2024-08-19 12:44:55.6514 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-20 12:44:55.651 | timeMax: 2024-08-19 12:44:55.651 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240819/20240819_002_autoQC03dda.raw nrow dataFiltered(): 221 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-21 14:26:28.34955 | timeMax: 2024-08-20 14:26:28.350521 | timeDiff: 5184000.00097156 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 37 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-06-21 12:26:28.35 | timeMax: 2024-08-20 12:26:28.351 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 37 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). NA p35909/Proteomics/QEXACTIVE_1/analytic_20240816/20240816_C35909_008_autoQC01.raw NA p35909/Proteomics/QEXACTIVE_1/analytic_20240816/20240816_C35909_008_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 364 using 'ggh4x' package ... p35909/Proteomics/QEXACTIVE_1/analytic_20240816/20240816_C35909_009_autoQC03dda.raw nrow dataFiltered(): 364 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-21 14:37:51.603013 | timeMax: 2024-08-20 14:37:51.603603 | timeDiff: 5184000.00059009 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 672 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-21 12:37:51.603 | timeMax: 2024-08-20 12:37:51.604 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 672 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240711_03_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240711_03_autoQC01.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240711_03_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-21 19:38:14.807461 | timeMax: 2024-08-20 19:38:14.808027 | timeDiff: 5184000.00056529 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-21 17:38:14.807 | timeMax: 2024-08-20 17:38:14.808 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-08-13 19:39:18.505469 | timeMax: 2024-08-20 19:39:18.505491 | timeDiff: 604800.000021458 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp