Listening on http://127.0.0.1:35839 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-24 13:51:22.331268 | timeMax: 2024-08-23 13:51:22.331922 | timeDiff: 5184000.00065374 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1024 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-24 11:51:22.331 | timeMax: 2024-08-23 11:51:22.332 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_point()`). p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_001_autoQC01.raw input timeRange: 7776000 | timeMin: 2024-08-21 11:51:25.141 | timeMax: 2024-08-23 11:51:22.332 | timeDiff: 172797.190999985 nFacets: 4 nrow dataFiltered(): 80 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_001_autoQC01.raw p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_001_autoQC01.raw NA p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_001_autoQC01.raw NA p36130/Proteomics/FUSION_2/aeberle_20240821/20240821_022_autoQC01.raw NA p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_001_autoQC01.raw plotClick: NA vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_001_autoQC01.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... Plotting chromatograms ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-24 15:36:27.974333 | timeMax: 2024-08-23 15:36:27.975069 | timeDiff: 5184000.00073528 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-06-24 13:36:27.974 | timeMax: 2024-08-23 13:36:27.975 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1152 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-25 12:30:10.958092 | timeMax: 2024-08-24 12:30:10.95865 | timeDiff: 5184000.00055742 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-06-25 10:30:10.958 | timeMax: 2024-08-24 10:30:10.959 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). NA p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_006_autoQC01.raw input timeRange: 31536000 | timeMin: 2024-06-25 10:30:10.958 | timeMax: 2024-08-24 12:30:54.041294 | timeDiff: 5184043.08329415 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 31536000 | timeMin: 2024-06-25 10:30:10.958 | timeMax: 2024-08-24 10:30:54.041 | timeDiff: 5184043.08299994 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 31536000 | timeMin: 2024-02-14 10:30:55.289 | timeMax: 2024-08-24 10:30:54.041 | timeDiff: 16588798.7519999 nFacets: 4 nrow dataFiltered(): 3248 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 2600 using 'ggh4x' package ... p36130/Proteomics/FUSION_2/aeberle_20240821/20240821_023_autoQC03dda.raw NA NA p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_018_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_018_autoQC03dia.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_018_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_018_autoQC03dia.raw plotClick: Plotting chromatograms ... nrow dataFiltered(): 504 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-08-18 20:40:01.905278 | timeMax: 2024-08-25 20:40:01.905322 | timeDiff: 604800.000043154 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-26 20:40:18.502208 | timeMax: 2024-08-25 20:40:18.50277 | timeDiff: 5184000.00056171 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-26 18:40:18.502 | timeMax: 2024-08-25 18:40:18.503 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA NA p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_018_autoQC03dia.raw NA p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_018_autoQC03dia.raw NA vals$rawDiag: TRUE p36130/Proteomics/FUSION_2/aeberle_20240821/20240821_023_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36130/Proteomics/FUSION_2/aeberle_20240821/20240821_023_autoQC03dda.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawDiag-autoQC03-plot 1: runApp reading index for 20240821_023_autoQC03dda.raw... vals$rawDiag: TRUE p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_018_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_018_autoQC03dia.raw plotChargeState Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawDiag-autoQC03-plot 1: runApp reading index for 20240823_018_autoQC03dia.raw... NA plotCycleTime plotTicBasepeak fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-26 20:58:56.402083 | timeMax: 2024-08-25 20:58:56.402686 | timeDiff: 5184000.00060272 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-26 18:58:56.402 | timeMax: 2024-08-25 18:58:56.403 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-08-18 21:38:18.756276 | timeMax: 2024-08-25 21:38:18.756322 | timeDiff: 604800.000045538 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 08:17:33.371299 | timeMax: 2024-08-26 08:17:33.372313 | timeDiff: 5184000.00101399 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 06:17:33.371 | timeMax: 2024-08-26 06:17:33.372 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-08-19 08:18:23.124428 | timeMax: 2024-08-26 08:18:23.124473 | timeDiff: 604800.000044584 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 08:18:34.762681 | timeMax: 2024-08-26 08:18:34.763249 | timeDiff: 5184000.00056839 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 06:18:34.763 | timeMax: 2024-08-26 06:18:34.763 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_025_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_025_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p28115/Proteomics/FUSION_2/jsackmann_20240823/20240823_025_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 09:45:29.661666 | timeMax: 2024-08-26 09:45:29.662238 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-06-27 07:45:29.662 | timeMax: 2024-08-26 07:45:29.662 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 10:03:12.541628 | timeMax: 2024-08-26 10:03:12.543002 | timeDiff: 5184000.00137353 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 08:03:12.54163 | timeMax: 2024-08-26 08:03:12.543 | timeDiff: 5184000.00137019 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 08:03:12.542 | timeMax: 2024-08-26 08:03:12.543 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... p36072/Proteomics/EXPLORIS_1/analytic_20240822/20240822_C36072_017_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 14:12:45.553775 | timeMax: 2024-08-26 14:12:45.555589 | timeDiff: 5184000.00181413 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-27 12:12:45.55378 | timeMax: 2024-08-26 12:12:45.55559 | timeDiff: 5184000.00181007 nFacets: 1 nFacets: 1 input timeRange: 7776000 | timeMin: 2024-06-27 12:12:45.554 | timeMax: 2024-08-26 12:12:45.556 | timeDiff: 5184000.00200009 nFacets: 1 nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... NA p36073/Proteomics/EXPLORIS_2/analytic_20240823/20240823_C36073_024_autoQC03dda.raw NA nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... p36080/Proteomics/EXPLORIS_1/analytic_20240823/20240823_C36080_016_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 16:41:16.099664 | timeMax: 2024-08-26 16:41:16.100985 | timeDiff: 5184000.0013206 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-06-27 14:41:16.09966 | timeMax: 2024-08-26 14:41:16.10098 | timeDiff: 5184000.00132012 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-27 14:41:16.1 | timeMax: 2024-08-26 14:41:16.101 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 5 rows containing missing values or values outside the scale range (`geom_line()`). NA p36038/Proteomics/QEXACTIVE_1/analytic_20240809/20240809_C36038_012_autoQC01.raw p36038/Proteomics/QEXACTIVE_1/analytic_20240809/20240809_C36038_012_autoQC01.raw NA nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 325 using 'ggh4x' package ... p35909/Proteomics/QEXACTIVE_1/analytic_20240816/20240816_C35909_009_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 16:43:45.508608 | timeMax: 2024-08-26 16:43:45.510816 | timeDiff: 5184000.00220776 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 5 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-06-27 14:43:45.509 | timeMax: 2024-08-26 14:43:45.511 | timeDiff: 5184000.00199986 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 5 rows containing missing values or values outside the scale range (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 16:45:04.235144 | timeMax: 2024-08-26 16:45:04.236359 | timeDiff: 5184000.00121546 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 14:45:04.23514 | timeMax: 2024-08-26 14:45:04.23636 | timeDiff: 5184000.00122023 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-27 14:45:04.235 | timeMax: 2024-08-26 14:45:04.236 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240826/20240826_002_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240819/20240819_003_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-27 18:07:01.189168 | timeMax: 2024-08-26 18:07:01.189731 | timeDiff: 5184000.00056267 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp NA p3000/Proteomics/EXPLORIS_1/lkunz_20240826/20240826_002_autoQC03dda.raw p36080/Proteomics/EXPLORIS_1/analytic_20240823/20240823_C36080_016_autoQC03dda.raw NA p36080/Proteomics/EXPLORIS_1/analytic_20240823/20240823_C36080_016_autoQC03dda.raw NA nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 08:42:28.23271 | timeMax: 2024-08-27 08:42:28.233284 | timeDiff: 5184000.0005734 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-06-28 06:42:28.233 | timeMax: 2024-08-27 06:42:28.233 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20240826/20240826_004_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240826/20240826_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240826/20240826_004_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240826/20240826_003_autoQC03dia.raw NA NA plotClick: fn has changed to /srv/www/htdocs//NA nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 p36150/Proteomics/QEXACTIVE_1/analytic_20240826/20240826_C36150_005_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36150/Proteomics/QEXACTIVE_1/analytic_20240826/20240826_C36150_005_autoQC03dda.raw NA p36150/Proteomics/QEXACTIVE_1/analytic_20240826/20240826_C36150_005_autoQC03dda.raw plotClick: NA plotClick: p36150/Proteomics/QEXACTIVE_1/analytic_20240826/20240826_C36150_005_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 08:56:23.750279 | timeMax: 2024-08-27 08:56:23.750849 | timeDiff: 5184000.00056982 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-06-28 06:56:23.75 | timeMax: 2024-08-27 06:56:23.751 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 10:03:47.917354 | timeMax: 2024-08-27 10:03:47.91811 | timeDiff: 5184000.00075555 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 2 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p36093/Proteomics/LUMOS_2/analytic_20240821/20240821_C36093_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36093/Proteomics/LUMOS_2/analytic_20240821/20240821_C36093_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240826/20240826_002_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 10:06:27.890979 | timeMax: 2024-08-27 10:06:27.892006 | timeDiff: 5184000.00102711 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240826/20240826_002_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 14:42:36.259947 | timeMax: 2024-08-27 14:42:36.260899 | timeDiff: 5184000.00095201 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-28 12:42:36.26 | timeMax: 2024-08-27 12:42:36.261 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_001_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_001_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_001_autoQC01.raw p3000/Proteomics/EXPLORIS_2/lkunz_20240826/20240826_001_autoQC01.raw NA nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_line()`). p36150/Proteomics/QEXACTIVE_1/analytic_20240826/20240826_C36150_004_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 17:09:52.343271 | timeMax: 2024-08-27 17:09:52.344198 | timeDiff: 5184000.00092697 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-06-28 15:09:52.343 | timeMax: 2024-08-27 15:09:52.344 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 247 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-28 23:21:59.867182 | timeMax: 2024-08-27 23:21:59.867746 | timeDiff: 5184000.00056434 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-28 21:21:59.867 | timeMax: 2024-08-27 21:21:59.868 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-29 09:02:28.244188 | timeMax: 2024-08-28 09:02:28.244753 | timeDiff: 5184000.00056458 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-29 07:02:28.24419 | timeMax: 2024-08-28 07:02:28.24475 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-29 07:02:28.244 | timeMax: 2024-08-28 07:02:28.245 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-29 11:44:18.809121 | timeMax: 2024-08-28 11:44:18.809682 | timeDiff: 5184000.00056124 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 704 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-29 09:44:18.809 | timeMax: 2024-08-28 09:44:18.81 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 704 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240718_06_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240827_03_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240827_03_autoQC03dia_flex.raw NA input timeRange: 31536000 | timeMin: 2024-06-29 09:44:18.809 | timeMax: 2024-08-28 11:45:21.291483 | timeDiff: 5184062.48248315 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-06-29 09:44:18.809 | timeMax: 2024-08-28 09:45:21.291 | timeDiff: 5184062.48199987 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... NA input timeRange: 31536000 | timeMin: 2023-08-31 09:45:22.887 | timeMax: 2024-08-28 09:45:21.291 | timeDiff: 31363198.4039998 nFacets: 4 nrow dataFiltered(): 4836 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1098 using 'ggh4x' package ... p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 126144000 | timeMin: 2024-06-29 11:58:14.174978 | timeMax: 2024-08-28 11:58:14.175664 | timeDiff: 5184000.00068617 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 126144000 | timeMin: 2024-06-29 09:58:14.175 | timeMax: 2024-08-28 09:58:14.176 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2024-06-29 09:58:14.175 | timeMax: 2024-08-28 11:58:31.680131 | timeDiff: 5184017.50513148 nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2024-06-29 09:58:14.175 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 5184017.50500011 nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:32.9716 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535998.7084 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:38.601131 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535993.0788689 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:38.601 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535993.079 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:40.663503 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535991.0164969 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:40.664 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535991.016 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:42.644731 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535989.035269 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:42.645 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535989.0350001 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:44.642146 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535987.0378542 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:44.642 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535987.0380001 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:46.59265 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535985.0873501 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:46.593 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535985.0870001 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:48.567543 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535983.1124568 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:48.568 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535983.112 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:50.583867 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535981.0961328 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:50.584 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535981.096 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:52.572008 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535979.1079917 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:52.572 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535979.108 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:54.544408 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535977.1355917 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:54.544 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535977.1360002 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:56.540373 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535975.1396267 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:56.54 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535975.1400001 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:58:58.569632 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535973.1103683 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:58:58.57 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535973.1100001 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:00.680336 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535970.9996636 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:00.68 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535971 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:02.726734 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535968.9532664 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:02.727 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535968.9530001 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:04.793618 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535966.8863819 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:04.794 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535966.8860002 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:06.988147 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535964.6918533 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:06.988 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535964.6920002 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:09.022341 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535962.6576595 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:09.022 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535962.658 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:11.051225 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535960.6287746 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:11.051 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535960.6289999 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:13.065056 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535958.614944 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:14.07067 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535957.6093297 Warning in observe() : timeDiff is higher than timeRange nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:14.071 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535957.609 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:16.050145 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535955.6298549 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:16.05 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535955.6300001 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:18.015745 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535953.6642549 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:18.016 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535953.664 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:20.134318 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535951.545682 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:20.134 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535951.546 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:22.140753 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535949.5392468 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 09:59:22.141 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535949.539 nFacets: 4 nrow dataFiltered(): 9040 using 'ggh4x' package ... Warning: Removed 33 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 31536000 | timeMin: 2023-08-29 11:59:24.104194 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535947.5758059 nFacets: 3 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 input timeRange: 31536000 | timeMin: 2023-08-29 12:59:24.482506 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31532347.1974943 nFacets: 3 nFacets: 1 input timeRange: 31536000 | timeMin: 2023-08-29 09:59:24.104 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31535947.576 nFacets: 3 nFacets: 1 input timeRange: 31536000 | timeMin: 2023-08-29 12:59:24.580367 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31532347.0996332 nFacets: 3 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1386 using 'ggh4x' package ... nrow dataFiltered(): 3081 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-08-29 10:59:24.58 | timeMax: 2024-08-28 09:58:31.68 | timeDiff: 31532347.1000001 nFacets: 3 nrow dataFiltered(): 3081 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1386 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-29 13:49:47.667482 | timeMax: 2024-08-28 13:49:47.668106 | timeDiff: 5184000.00062442 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-29 11:49:47.667 | timeMax: 2024-08-28 11:49:47.668 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-06-30 09:02:58.026663 | timeMax: 2024-08-29 09:02:58.027467 | timeDiff: 5184000.00080442 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 455 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-30 07:02:58.02666 | timeMax: 2024-08-29 07:02:58.02747 | timeDiff: 5184000.00080991 nFacets: 1 nrow dataFiltered(): 455 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-06-30 07:02:58.027 | timeMax: 2024-08-29 07:02:58.027 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 455 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-01 09:59:33.519202 | timeMax: 2024-08-30 09:59:33.519787 | timeDiff: 5184000.0005846 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-01 07:59:33.519 | timeMax: 2024-08-30 07:59:33.52 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: The following named parsers don't match the column names: Time, Size, Precursors.Identified, Proteins.Identified Warning: Error in : id variables not found in data: Md5, File.Name, time 124: stop 123: melt_check 122: melt.data.frame 120: readFUN 119: 103: autoQC03DIA 97: renderTable [/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/server.R#489] 96: func 83: renderFunc 82: output$lastEntryAutoQC03dia 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-01 10:01:29.611031 | timeMax: 2024-08-30 10:01:29.611604 | timeDiff: 5184000.0005734 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-07-01 08:01:29.61103 | timeMax: 2024-08-30 08:01:29.6116 | timeDiff: 5184000.00057006 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-01 10:10:47.159664 | timeMax: 2024-08-30 10:10:47.160226 | timeDiff: 5184000.00056171 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-01 08:10:47.16 | timeMax: 2024-08-30 08:10:47.16 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). NA p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_007_autoQC01.raw NA p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_007_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-01 16:02:25.712697 | timeMax: 2024-08-30 16:02:25.713408 | timeDiff: 5184000.00071144 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-07-01 14:02:25.713 | timeMax: 2024-08-30 14:02:25.713 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-08-23 20:50:37.217188 | timeMax: 2024-08-30 20:50:37.217233 | timeDiff: 604800.000045538 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-04 12:37:53.163008 | timeMax: 2024-09-02 12:37:53.163582 | timeDiff: 5184000.00057316 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 10:37:53.163 | timeMax: 2024-09-02 10:37:53.164 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... NA p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_013_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-04 12:38:30.773275 | timeMax: 2024-09-02 12:38:30.773839 | timeDiff: 5184000.00056362 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 10:38:30.773 | timeMax: 2024-09-02 10:38:30.774 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-04 12:41:04.723403 | timeMax: 2024-09-02 12:41:04.723969 | timeDiff: 5184000.00056648 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 10:41:04.7234 | timeMax: 2024-09-02 10:41:04.72397 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 10:41:04.723 | timeMax: 2024-09-02 10:41:04.724 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-04 12:52:33.671055 | timeMax: 2024-09-02 12:52:33.671633 | timeDiff: 5184000.0005784 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 10:52:33.671 | timeMax: 2024-09-02 10:52:33.672 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-04 12:55:15.681567 | timeMax: 2024-09-02 12:55:15.682135 | timeDiff: 5184000.00056791 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 10:55:15.682 | timeMax: 2024-09-02 10:55:15.682 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-04 12:56:34.180889 | timeMax: 2024-09-02 12:56:34.181454 | timeDiff: 5184000.00056481 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 10:56:34.18089 | timeMax: 2024-09-02 10:56:34.18145 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 10:56:34.181 | timeMax: 2024-09-02 10:56:34.181 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-04 14:52:58.32534 | timeMax: 2024-09-02 14:52:58.325908 | timeDiff: 5184000.00056815 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 12:52:58.32534 | timeMax: 2024-09-02 12:52:58.32591 | timeDiff: 5184000.00056982 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 12:52:58.325 | timeMax: 2024-09-02 12:52:58.326 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-04 17:09:37.478062 | timeMax: 2024-09-02 17:09:37.478628 | timeDiff: 5184000.00056624 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 377 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 15:09:37.47806 | timeMax: 2024-09-02 15:09:37.47863 | timeDiff: 5184000.00056982 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-04 15:09:37.478 | timeMax: 2024-09-02 15:09:37.479 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 377 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/lkunz_20240902/20240902_002_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/lkunz_20240902/20240902_003_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-05 09:49:03.720841 | timeMax: 2024-09-03 09:49:03.722384 | timeDiff: 5184000.00154257 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-07-05 07:49:03.721 | timeMax: 2024-09-03 07:49:03.722 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 351 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-06 00:14:17.126482 | timeMax: 2024-09-04 00:14:17.127133 | timeDiff: 5184000.00065112 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-07-05 22:14:17.126 | timeMax: 2024-09-03 22:14:17.127 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-08-28 01:29:22.028863 | timeMax: 2024-09-04 01:29:22.028901 | timeDiff: 604800.000037432 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-06 11:06:06.163445 | timeMax: 2024-09-04 11:06:06.164351 | timeDiff: 5184000.00090647 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-06 09:06:06.163 | timeMax: 2024-09-04 09:06:06.164 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA p36163/Proteomics/LUMOS_2/pgehrig_20240903/20240903_001_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240827/20240827_002_autoQC03dda.raw NA p36011/Proteomics/LUMOS_2/pgehrig_20240828/20240828_006_autoQC03dda.raw NA NA p36202/Proteomics/LUMOS_2/analytic_20240830/20240830_C36202_007_autoQC03dia.raw NA p36202/Proteomics/LUMOS_2/analytic_20240830/20240830_C36202_007_autoQC03dia.raw NA p36202/Proteomics/LUMOS_2/analytic_20240830/20240830_C36202_007_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-06 11:12:22.738173 | timeMax: 2024-09-04 11:12:22.739108 | timeDiff: 5184000.00093532 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-06 09:12:22.73817 | timeMax: 2024-09-04 09:12:22.73911 | timeDiff: 5184000.00094008 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-06 09:12:22.738 | timeMax: 2024-09-04 09:12:22.739 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/lkunz_20240902/20240902_002_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-06 12:41:20.824497 | timeMax: 2024-09-04 12:41:20.825069 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 864 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-06 10:41:20.825 | timeMax: 2024-09-04 10:41:20.825 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 864 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-06 12:41:29.007092 | timeMax: 2024-09-04 12:41:29.007674 | timeDiff: 5184000.00058126 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 864 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-06 10:41:29.007 | timeMax: 2024-09-04 10:41:29.008 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 864 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... NA Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 278036 autoQC01 module APEX long nrow: 876 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/lkunz_20240902/20240902_002_autoQC03dda.raw NA NA p3000/Proteomics/EXPLORIS_2/lkunz_20240902/20240902_003_autoQC03dia.raw p36144/Proteomics/EXPLORIS_2/analytic_20240902/20240902_C36144_026_autoQC03dia3.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-06 13:37:22.904153 | timeMax: 2024-09-04 13:37:22.904718 | timeDiff: 5184000.00056505 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 247 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-06 11:37:22.90415 | timeMax: 2024-09-04 11:37:22.90472 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 247 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-06 11:37:22.904 | timeMax: 2024-09-04 11:37:22.905 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 247 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 247 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 247 using 'ggh4x' package ... nrow dataFiltered(): 247 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-06 17:22:35.966313 | timeMax: 2024-09-04 17:22:35.966875 | timeDiff: 5184000.00056267 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-06 15:22:35.96631 | timeMax: 2024-09-04 15:22:35.96688 | timeDiff: 5184000.00056982 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-06 15:22:35.966 | timeMax: 2024-09-04 15:22:35.967 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240904/20240904_003_autoQC03dda.raw nrow dataFiltered(): 260 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 31536000 | timeMin: 2024-07-07 12:10:36.03627 | timeMax: 2024-09-05 12:10:36.037118 | timeDiff: 5184000.00084829 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 896 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-07-07 10:10:36.036 | timeMax: 2024-09-05 10:10:36.037 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 896 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-07 13:10:28.077562 | timeMax: 2024-09-05 13:10:28.078274 | timeDiff: 5184000.00071216 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-07 11:10:28.078 | timeMax: 2024-09-05 11:10:28.078 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). NA p24073/Proteomics/EXPLORIS_1/pecnikjaruschka_20240905_20240905_JP_immune_proteins_Ypres/20240905_001_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240904/20240904_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240904/20240904_003_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240904/20240904_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240904/20240904_003_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 31536000 | timeMin: 2024-07-08 08:10:42.613999 | timeMax: 2024-09-06 08:10:42.614572 | timeDiff: 5184000.00057316 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-07-08 06:10:42.614 | timeMax: 2024-09-06 06:10:42.615 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240905_03_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240904_03_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240828_06_autoQC03dia_flex_emitter_on_top.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240827_03_autoQC03dia_flex.raw NA input timeRange: 31536000 | timeMin: 2023-11-09 06:10:47.703 | timeMax: 2024-09-06 06:10:42.615 | timeDiff: 26092794.9119999 nFacets: 4 nrow dataFiltered(): 3692 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1224 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240905_03_autoQC03dia_flex.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240905_03_autoQC03dia_flex.raw NA nFacets: 3 nrow dataFiltered(): 2457 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1404 using 'ggh4x' package ... NA nrow dataFiltered(): 2457 using 'ggh4x' package ... nrow dataFiltered(): 1404 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-08 10:24:01.782947 | timeMax: 2024-09-06 10:24:01.783754 | timeDiff: 5184000.00080752 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 816 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 5 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-07-08 08:24:01.783 | timeMax: 2024-09-06 08:24:01.784 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 816 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 5 rows containing missing values or values outside the scale range (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-11 08:33:01.049126 | timeMax: 2024-09-09 08:33:01.049688 | timeDiff: 5184000.00056148 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-11 06:33:01.049 | timeMax: 2024-09-09 06:33:01.05 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-11 08:53:43.416063 | timeMax: 2024-09-09 08:53:43.416716 | timeDiff: 5184000.00065374 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-11 06:53:43.416 | timeMax: 2024-09-09 06:53:43.417 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240906_03_autoQC03dia_flex.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-11 10:15:53.819341 | timeMax: 2024-09-09 10:15:53.819914 | timeDiff: 5184000.00057364 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-11 08:15:53.819 | timeMax: 2024-09-09 08:15:53.82 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-07-11 08:15:53.819 | timeMax: 2024-09-09 10:16:17.891874 | timeDiff: 5184024.07287407 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-07-11 08:15:53.819 | timeMax: 2024-09-09 08:16:17.892 | timeDiff: 5184024.07299995 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-07-11 08:16:17.911 | timeMax: 2024-09-09 08:16:17.892 | timeDiff: 5183999.98099995 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-03-13 08:16:20.8655 | timeMax: 2024-09-09 08:16:17.892 | timeDiff: 15551997.0265 nFacets: 4 nrow dataFiltered(): 2340 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-03-13 10:16:23.903769 | timeMax: 2024-09-09 08:16:17.892 | timeDiff: 15548393.9882309 nFacets: 4 nrow dataFiltered(): 2340 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-03-13 09:16:23.904 | timeMax: 2024-09-09 08:16:17.892 | timeDiff: 15548393.9879999 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-11 10:48:04.612552 | timeMax: 2024-09-09 10:48:04.613119 | timeDiff: 5184000.00056648 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-11 08:48:04.61255 | timeMax: 2024-09-09 08:48:04.61312 | timeDiff: 5184000.00057006 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-11 08:48:04.613 | timeMax: 2024-09-09 08:48:04.613 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-07-11 08:48:04.613 | timeMax: 2024-09-09 10:48:16.295262 | timeDiff: 5184011.68226194 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-07-11 08:48:04.613 | timeMax: 2024-09-09 08:48:16.295 | timeDiff: 5184011.68200016 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-14 08:48:16.309 | timeMax: 2024-09-09 08:48:16.295 | timeDiff: 12787199.9860001 nFacets: 4 nrow dataFiltered(): 2028 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-03-13 08:48:19.27839 | timeMax: 2024-09-09 08:48:16.295 | timeDiff: 15551997.0166101 nFacets: 4 nrow dataFiltered(): 2340 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-03-13 10:48:22.475358 | timeMax: 2024-09-09 08:48:16.295 | timeDiff: 15548393.8196421 nFacets: 4 nrow dataFiltered(): 2340 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-03-13 09:48:22.475 | timeMax: 2024-09-09 08:48:16.295 | timeDiff: 15548393.8200002 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-11 11:17:02.213083 | timeMax: 2024-09-09 11:17:02.213769 | timeDiff: 5184000.00068569 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... Warning: Removed 42 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-07-11 09:17:02.213 | timeMax: 2024-09-09 09:17:02.214 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... Warning: Removed 42 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 260 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-11 16:53:02.875038 | timeMax: 2024-09-09 16:53:02.875612 | timeDiff: 5184000.0005734 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-11 14:53:02.875 | timeMax: 2024-09-09 14:53:02.876 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-12 09:30:34.29253 | timeMax: 2024-09-10 09:30:34.293096 | timeDiff: 5184000.00056553 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-12 07:30:34.29253 | timeMax: 2024-09-10 07:30:34.2931 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-12 07:30:34.293 | timeMax: 2024-09-10 07:30:34.293 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-12 11:28:25.816183 | timeMax: 2024-09-10 11:28:25.817058 | timeDiff: 5184000.000875 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-12 09:28:25.81618 | timeMax: 2024-09-10 09:28:25.81706 | timeDiff: 5184000.00088 nFacets: 4 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-12 09:28:25.816 | timeMax: 2024-09-10 09:28:25.817 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... p28115/Proteomics/FUSION_2/wzhong_20240906_wz0906/20240906_018_autoQC03dia.raw NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-12 11:55:40.881382 | timeMax: 2024-09-10 11:55:40.882123 | timeDiff: 5184000.000741 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-12 09:55:40.881 | timeMax: 2024-09-10 09:55:40.882 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_006_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_001_autoQC01.raw NA nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 494 using 'ggh4x' package ... p36202/Proteomics/LUMOS_2/analytic_20240830/20240830_C36202_007_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_002_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_002_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-12 12:58:36.304285 | timeMax: 2024-09-10 12:58:36.304855 | timeDiff: 5184000.00056934 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-12 16:12:43.695778 | timeMax: 2024-09-10 16:12:43.697558 | timeDiff: 5184000.00178003 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-07-12 14:12:43.696 | timeMax: 2024-09-10 14:12:43.698 | timeDiff: 5184000.00199986 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-12 16:14:35.355298 | timeMax: 2024-09-10 16:14:35.356827 | timeDiff: 5184000.00152969 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-07-12 14:14:35.355 | timeMax: 2024-09-10 14:14:35.357 | timeDiff: 5184000.00200009 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 494 using 'ggh4x' package ... NA p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_2/tobiasko_20231128/20231128_003_S580219_K562_incl_iRT_autoQC03dia.raw p33212/Proteomics/LUMOS_2/cfortes_20231206/20231206_003_S580219_K562_incl_iRT_autoQC03dia.raw NA NA p3000/Proteomics/LUMOS_2/analytics_20240610/20240610_003_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-12 16:28:32.574958 | timeMax: 2024-09-10 16:28:32.575701 | timeDiff: 5184000.00074291 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-12 14:28:32.575 | timeMax: 2024-09-10 14:28:32.576 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). p24073/Proteomics/EXPLORIS_1/pecnikjaruschka_20240905_20240905_JP_immune_proteins_Ypres/20240910_001_autoQC01.raw p24073/Proteomics/EXPLORIS_1/pecnikjaruschka_20240905_20240905_JP_immune_proteins_Ypres/20240910_001_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... NA Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 278553 autoQC01 module APEX long nrow: 1152 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). NA p24073/Proteomics/EXPLORIS_1/pecnikjaruschka_20240905_20240905_JP_immune_proteins_Ypres/20240910_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-13 09:43:52.237674 | timeMax: 2024-09-11 09:43:52.238353 | timeDiff: 5184000.00067854 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-13 07:43:52.23767 | timeMax: 2024-09-11 07:43:52.23835 | timeDiff: 5184000.00068021 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-13 07:43:52.238 | timeMax: 2024-09-11 07:43:52.238 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-13 11:47:14.532839 | timeMax: 2024-09-11 11:47:14.533404 | timeDiff: 5184000.00056458 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-13 09:47:14.533 | timeMax: 2024-09-11 09:47:14.533 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p36278/Proteomics/LUMOS_2/analytic_20240910/20240910_C36278_001_autoQC01.raw p36278/Proteomics/LUMOS_2/analytic_20240910/20240910_C36278_004_autoQC01.raw p36278/Proteomics/LUMOS_2/analytic_20240910/20240910_C36278_004_autoQC01.raw NA p36278/Proteomics/LUMOS_2/analytic_20240910/20240910_C36278_004_autoQC01.raw p36278/Proteomics/LUMOS_2/analytic_20240910/20240910_C36278_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36278/Proteomics/LUMOS_2/analytic_20240910/20240910_C36278_004_autoQC01.raw p3127/Proteomics/LUMOS_2/ackle_20240719_NL20/20240719_025_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 546 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_003_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_003_autoQC03dia.raw p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_003_autoQC03dia.raw NA p36278/Proteomics/LUMOS_2/analytic_20240910/20240910_C36278_005_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36278/Proteomics/LUMOS_2/analytic_20240910/20240910_C36278_005_autoQC03dda.raw p36278/Proteomics/LUMOS_2/analytic_20240910/20240910_C36278_005_autoQC03dda.raw plotClick: p36172/Proteomics/LUMOS_2/analytic_20240910/20240910_C36172_005_autoQC03dda.raw p36172/Proteomics/LUMOS_2/analytic_20240910/20240910_C36172_005_autoQC03dda.raw p36278/Proteomics/LUMOS_2/analytic_20240910/20240910_C36278_005_autoQC03dda.raw p36172/Proteomics/LUMOS_2/analytic_20240910/20240910_C36172_005_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-13 17:38:15.358714 | timeMax: 2024-09-11 17:38:15.359353 | timeDiff: 5184000.00063872 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-13 15:38:15.35871 | timeMax: 2024-09-11 15:38:15.35935 | timeDiff: 5184000.00064015 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-13 15:38:15.359 | timeMax: 2024-09-11 15:38:15.359 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-14 12:54:45.476417 | timeMax: 2024-09-12 12:54:45.477592 | timeDiff: 5184000.00117445 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-07-14 10:54:45.476 | timeMax: 2024-09-12 10:54:45.478 | timeDiff: 5184000.00199986 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1200 using 'ggh4x' package ... vals$rawrr: TRUE input timeRange: 7776000 | timeMin: 2024-08-01 10:54:47.685 | timeMax: 2024-09-12 10:54:45.478 | timeDiff: 3628797.79299998 nFacets: 4 nrow dataFiltered(): 800 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-14 14:40:02.995894 | timeMax: 2024-09-12 14:40:02.996577 | timeDiff: 5184000.00068307 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-14 12:40:02.996 | timeMax: 2024-09-12 12:40:02.997 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). p36271/Proteomics/FUSION_2/adelizliang_20240911/20240911_006_autoQC01.raw input timeRange: 7776000 | timeMin: 2024-09-03 12:40:04.038 | timeMax: 2024-09-12 12:40:02.997 | timeDiff: 777598.958999872 nFacets: 4 nrow dataFiltered(): 192 using 'ggh4x' package ... vals$rawrr: TRUE p36271/Proteomics/FUSION_2/adelizliang_20240911/20240911_006_autoQC01.raw p36271/Proteomics/FUSION_2/adelizliang_20240911/20240911_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36271/Proteomics/FUSION_2/adelizliang_20240911/20240911_006_autoQC01.raw Reading raw file: /srv/www/htdocs//p36271/Proteomics/FUSION_2/adelizliang_20240911/20240911_006_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p36271/Proteomics/FUSION_2/adelizliang_20240911/20240911_006_autoQC01.raw NA p36271/Proteomics/FUSION_2/adelizliang_20240911/20240911_006_autoQC01.raw p36271/Proteomics/FUSION_2/adelizliang_20240911/20240911_004_autoQC01.raw p36271/Proteomics/FUSION_2/adelizliang_20240911/20240911_006_autoQC01.raw input timeRange: 1209600 | timeMin: 2024-07-14 14:41:20.138995 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 5184000.00667477 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:21.150593 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209598.99507689 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:22.41816 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209597.7275095 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:23.671742 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209596.4739275 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:24.933509 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209595.21216059 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:26.198688 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209593.94698191 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:27.446801 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209592.69886875 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:28.698212 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209591.44745731 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:29.948277 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209590.19739294 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:31.202961 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209588.94270825 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:32.466145 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209587.67952466 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:33.748064 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209586.39760566 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:35.019402 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209585.12626767 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:36.28787 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209583.85779929 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:37.555249 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209582.59042072 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:38.827192 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209581.31847811 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:40.099631 | timeMax: 2024-09-12 14:41:20.14567 | timeDiff: 1209580.04603863 NA nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:41:40.1 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209580.046 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:42.603198 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209577.54280162 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:41:42.603 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209577.54299998 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:44.489639 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209575.65636063 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:41:44.49 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209575.6559999 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:46.366624 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209573.77937603 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:41:46.367 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209573.77899981 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:48.335121 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209571.81087899 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:41:48.335 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209571.81099987 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:50.166993 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209569.97900653 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:41:50.167 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209569.97899985 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:51.977017 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209568.16898322 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:41:51.977 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209568.16899991 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:54.039005 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209566.10699463 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:41:54.039 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209566.10699987 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:56.276834 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209563.86916566 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:57.301919 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209562.84408045 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:41:57.302 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209562.84399986 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:41:59.28985 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209560.85614967 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:00.421129 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209559.72487116 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:00.421 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209559.7249999 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:02.575515 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209557.57048535 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:02.576 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209557.56999993 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:04.736892 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209555.40910745 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:04.737 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209555.40899992 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:06.895684 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209553.2503159 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:06.896 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209553.25 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:09.355937 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209550.79006338 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:09.356 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209550.78999996 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:11.929767 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209548.21623325 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:11.93 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209548.21599984 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:14.142135 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209546.00386524 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:15.15539 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209544.99061036 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:15.155 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209544.99099994 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:17.495195 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209542.65080523 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:17.495 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209542.65100002 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:19.697303 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209540.44869685 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:19.697 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209540.44899988 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:21.951887 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209538.19411325 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:21.952 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209538.19400001 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:24.262925 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209535.88307476 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:24.263 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209535.8829999 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:26.650955 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209533.49504447 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:26.651 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209533.49499989 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:29.233409 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209530.9125905 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:29.233 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209530.91299987 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:31.635237 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209528.51076293 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:31.635 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209528.51099992 nFacets: 4 nrow dataFiltered(): 256 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:34.090241 | timeMax: 2024-09-12 12:41:20.146 | timeDiff: 1209526.05575871 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 1209600 | timeMin: 2024-07-14 14:42:37.938626 | timeMax: 2024-09-12 14:42:37.939608 | timeDiff: 5184000.00098205 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 1209600 | timeMin: 2024-08-29 14:42:38.945919 | timeMax: 2024-09-12 14:42:37.939608 | timeDiff: 1209598.99368954 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:38.946 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209598.99399996 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:40.454076 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209597.48592448 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:41.557894 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209596.38210583 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:41.558 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209596.38199997 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:43.863579 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209594.07642078 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:44.931451 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209593.00854921 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:44.931 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209593.00900006 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:47.627111 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209590.31288862 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:48.708991 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209589.23100901 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:49.783544 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209588.15645647 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:50.840594 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209587.099406 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:50.841 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209587.09899998 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:54.199664 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209583.7403357 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:55.516894 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209582.42310596 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:56.671007 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209581.26899338 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 12:42:56.671 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209581.26900005 nFacets: 4 nrow dataFiltered(): 272 using 'ggh4x' package ... input timeRange: 1209600 | timeMin: 2024-08-29 14:42:58.888342 | timeMax: 2024-09-12 12:42:37.94 | timeDiff: 1209579.05165815 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-14 14:43:03.032925 | timeMax: 2024-09-12 14:43:03.033511 | timeDiff: 5184000.00058603 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-14 12:43:03.033 | timeMax: 2024-09-12 12:43:03.034 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). Warning in observe() : timeDiff is higher than timeRange input timeRange: 7776000 | timeMin: 2024-09-05 12:43:04.239 | timeMax: 2024-09-12 12:43:03.034 | timeDiff: 604798.794999838 nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... p28115/Proteomics/FUSION_2/wzhong_20240912_ms0912/20240912_001_autoQC01.raw vals$rawrr: TRUE p28115/Proteomics/FUSION_2/wzhong_20240912_ms0912/20240912_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p28115/Proteomics/FUSION_2/wzhong_20240912_ms0912/20240912_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p28115/Proteomics/FUSION_2/wzhong_20240912_ms0912/20240912_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-15 09:03:51.107171 | timeMax: 2024-09-13 09:03:51.107737 | timeDiff: 5184000.00056648 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-15 07:03:51.10717 | timeMax: 2024-09-13 07:03:51.10774 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-15 07:03:51.107 | timeMax: 2024-09-13 07:03:51.108 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240911/20240911_009_autoQC03dia_newPrecol.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240911/20240911_009_autoQC03dia_newPrecol.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-15 09:32:56.774243 | timeMax: 2024-09-13 09:32:56.774801 | timeDiff: 5184000.0005579 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-07-15 07:32:56.774 | timeMax: 2024-09-13 07:32:56.775 | timeDiff: 5184000.00100017 nFacets: 1 nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240909_03_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240909_03_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240909_03_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240909_03_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240909_03_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240909_03_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-15 09:40:30.474437 | timeMax: 2024-09-13 09:40:30.475001 | timeDiff: 5184000.00056338 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1200 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-15 07:40:30.474 | timeMax: 2024-09-13 07:40:30.475 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-15 13:36:26.534245 | timeMax: 2024-09-13 13:36:26.534866 | timeDiff: 5184000.0006206 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-15 11:36:26.534 | timeMax: 2024-09-13 11:36:26.535 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw plotClick: plotClick: p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw nrow dataFiltered(): 450 using 'ggh4x' package ... NA nrow dataFiltered(): 450 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw plotClick: plotClick: NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw plotClick: vals$rawrr: TRUE NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw plotClick: NA vals$rawrr: TRUE nrow dataFiltered(): 450 using 'ggh4x' package ... Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw Plotting chromatograms ... Read 22032 items plotClick: plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw vals$rawrr: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw NA nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 2 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_003_autoQC03dia.raw nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... NA nFacets: 2 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-15 14:36:57.106539 | timeMax: 2024-09-13 14:36:57.10726 | timeDiff: 5184000.00072098 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-07-15 12:36:57.107 | timeMax: 2024-09-13 12:36:57.107 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... NA p28115/Proteomics/FUSION_2/wzhong_20240912_ms0912/20240912_018_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-09-08 16:50:16.775595 | timeMax: 2024-09-15 16:50:16.77564 | timeDiff: 604800.000044823 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-17 16:50:31.882126 | timeMax: 2024-09-15 16:50:31.882703 | timeDiff: 5184000.00057673 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-17 14:50:31.882 | timeMax: 2024-09-15 14:50:31.883 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 912 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240909_03_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw NA plotClick: fn has changed to /srv/www/htdocs//NA input timeRange: 15552000 | timeMin: 2024-07-17 14:50:31.882 | timeMax: 2024-09-15 16:51:33.565955 | timeDiff: 5184061.68395495 nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-07-17 14:50:31.882 | timeMax: 2024-09-15 14:51:33.566 | timeDiff: 5184061.68400002 nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-04-22 14:51:35.137 | timeMax: 2024-09-15 14:51:33.566 | timeDiff: 12614398.4289999 nFacets: 4 nrow dataFiltered(): 1144 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 810 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw NA p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_013_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240909_03_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240906_03_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw NA plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-18 09:27:18.644999 | timeMax: 2024-09-16 09:27:18.645563 | timeDiff: 5184000.00056362 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-18 07:27:18.645 | timeMax: 2024-09-16 07:27:18.646 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-18 09:44:08.923382 | timeMax: 2024-09-16 09:44:08.923973 | timeDiff: 5184000.00059152 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-07-18 07:44:08.923 | timeMax: 2024-09-16 07:44:08.924 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-18 11:12:46.551016 | timeMax: 2024-09-16 11:12:46.551599 | timeDiff: 5184000.00058365 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-18 09:12:46.55102 | timeMax: 2024-09-16 09:12:46.5516 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-18 09:12:46.551 | timeMax: 2024-09-16 09:12:46.552 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-18 15:35:09.418378 | timeMax: 2024-09-16 15:35:09.419688 | timeDiff: 5184000.00130963 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-07-18 13:35:09.41838 | timeMax: 2024-09-16 13:35:09.41969 | timeDiff: 5184000.00131011 nFacets: 4 nFacets: 1 input timeRange: 7776000 | timeMin: 2024-07-18 13:35:09.418 | timeMax: 2024-09-16 13:35:09.42 | timeDiff: 5184000.00200009 nFacets: 4 nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... p28115/Proteomics/FUSION_2/wzhong_20240912_ms0912/20240912_018_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 08:49:08.11255 | timeMax: 2024-09-17 08:49:08.113141 | timeDiff: 5184000.00059056 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-19 06:49:08.113 | timeMax: 2024-09-17 06:49:08.113 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 10:09:03.497181 | timeMax: 2024-09-17 10:09:03.497741 | timeDiff: 5184000.00056028 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-19 08:09:03.497 | timeMax: 2024-09-17 08:09:03.498 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p36278/Proteomics/LUMOS_2/analytic_20240912/20240912_C36278_001_autoQC01.raw p36278/Proteomics/LUMOS_2/analytic_20240912/20240912_C36278_004_autoQC01.raw p36278/Proteomics/LUMOS_2/analytic_20240912/20240912_C36278_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 10:09:19.640103 | timeMax: 2024-09-17 10:09:19.640672 | timeDiff: 5184000.00056958 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-19 08:09:19.64 | timeMax: 2024-09-17 08:09:19.641 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p36172/Proteomics/LUMOS_2/analytic_20240910/20240910_C36172_001_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 494 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p36278/Proteomics/LUMOS_2/analytic_20240912/20240912_C36278_005_autoQC03dda.raw p36278/Proteomics/LUMOS_2/analytic_20240912/20240912_C36278_005_autoQC03dda.raw NA plotClick: p36278/Proteomics/LUMOS_2/analytic_20240912/20240912_C36278_005_autoQC03dda.raw NA plotClick: p36278/Proteomics/LUMOS_2/analytic_20240912/20240912_C36278_005_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//NA NA p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_003_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 10:10:02.452109 | timeMax: 2024-09-17 10:10:02.452693 | timeDiff: 5184000.00058413 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-19 08:10:02.452 | timeMax: 2024-09-17 08:10:02.453 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 10:35:32.305074 | timeMax: 2024-09-17 10:35:32.305735 | timeDiff: 5184000.00066042 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-19 08:35:32.305 | timeMax: 2024-09-17 08:35:32.306 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 640 using 'ggh4x' package ... Warning: Removed 34 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 260 using 'ggh4x' package ... p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_007_autoQC03dda.raw NA p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_006_autoQC03dda.raw p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_005_autoQC03dda.raw nrow dataFiltered(): 260 using 'ggh4x' package ... p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_007_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 11:33:08.979059 | timeMax: 2024-09-17 11:33:08.979638 | timeDiff: 5184000.00057864 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-19 09:33:08.979 | timeMax: 2024-09-17 09:33:08.98 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 13:57:58.824754 | timeMax: 2024-09-17 13:57:58.825316 | timeDiff: 5184000.00056148 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-19 11:57:58.825 | timeMax: 2024-09-17 11:57:58.825 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). NA nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 14:08:08.430406 | timeMax: 2024-09-17 14:08:08.430973 | timeDiff: 5184000.00056696 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-19 12:08:08.43 | timeMax: 2024-09-17 12:08:08.431 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 14:45:18.726383 | timeMax: 2024-09-17 14:45:18.726965 | timeDiff: 5184000.00058198 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-19 12:45:18.726 | timeMax: 2024-09-17 12:45:18.727 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 14:50:50.08522 | timeMax: 2024-09-17 14:50:50.085951 | timeDiff: 5184000.00073099 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-07-19 12:50:50.085 | timeMax: 2024-09-17 12:50:50.086 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 880 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//NA vals$rawrr: TRUE Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240917_05_autoQC01_flex.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... NA vals$rawrr: TRUE NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 15:03:56.444269 | timeMax: 2024-09-17 15:03:56.444829 | timeDiff: 5184000.00055933 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 656 using 'ggh4x' package ... Warning: Removed 35 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-07-19 13:03:56.444 | timeMax: 2024-09-17 13:03:56.445 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 656 using 'ggh4x' package ... Warning: Removed 35 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 260 using 'ggh4x' package ... p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_007_autoQC03dda.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw nrow dataFiltered(): 656 using 'ggh4x' package ... Warning: Removed 70 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 15:09:56.960924 | timeMax: 2024-09-17 15:09:56.961487 | timeDiff: 5184000.00056291 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-19 13:09:56.961 | timeMax: 2024-09-17 13:09:56.961 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 15:21:17.328339 | timeMax: 2024-09-17 15:21:17.328912 | timeDiff: 5184000.00057244 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-19 13:21:17.328 | timeMax: 2024-09-17 13:21:17.329 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 880 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... vals$rawrr: TRUE p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 15:26:11.318768 | timeMax: 2024-09-17 15:26:11.319341 | timeDiff: 5184000.0005734 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-19 13:26:11.319 | timeMax: 2024-09-17 13:26:11.319 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 15:53:40.298703 | timeMax: 2024-09-17 15:53:40.29927 | timeDiff: 5184000.00056696 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 16:13:31.421022 | timeMax: 2024-09-17 16:13:31.421583 | timeDiff: 5184000.00056148 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-07-19 14:13:31.421 | timeMax: 2024-09-17 14:13:31.422 | timeDiff: 5184000.00099993 nFacets: 1 nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 16:14:11.219182 | timeMax: 2024-09-17 16:14:11.219748 | timeDiff: 5184000.00056577 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 656 using 'ggh4x' package ... Warning: Removed 35 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-07-19 14:14:11.219 | timeMax: 2024-09-17 14:14:11.22 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 656 using 'ggh4x' package ... Warning: Removed 35 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_line()`). NA p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_001_autoQC01.raw p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_001_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw nrow dataFiltered(): 656 using 'ggh4x' package ... Warning: Removed 70 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_line()`). NA nrow dataFiltered(): 656 using 'ggh4x' package ... Warning: Removed 105 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 260 using 'ggh4x' package ... NA p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_007_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-19 17:15:05.054834 | timeMax: 2024-09-17 17:15:05.055532 | timeDiff: 5184000.00069809 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-19 15:15:05.055 | timeMax: 2024-09-17 15:15:05.056 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 880 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 08:17:27.946507 | timeMax: 2024-09-18 08:17:27.947075 | timeDiff: 5184000.00056791 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-20 06:17:27.947 | timeMax: 2024-09-18 06:17:27.947 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240913/20240913_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240917/20240917_007_autoQC03dia.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240913/20240913_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240917/20240917_007_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-09-11 08:25:12.983734 | timeMax: 2024-09-18 08:25:12.983782 | timeDiff: 604800.000047445 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 08:25:27.980637 | timeMax: 2024-09-18 08:25:27.981274 | timeDiff: 5184000.00063658 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-07-20 06:25:27.981 | timeMax: 2024-09-18 06:25:27.981 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 880 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240917_05_autoQC01_flex.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240909_03_autoQC03dia_flex.raw NA input timeRange: 31536000 | timeMin: 2024-07-20 06:25:27.981 | timeMax: 2024-09-18 08:25:59.262429 | timeDiff: 5184031.28142905 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-07-20 06:25:27.981 | timeMax: 2024-09-18 06:25:59.262 | timeDiff: 5184031.28100014 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... NA input timeRange: 31536000 | timeMin: 2023-11-14 06:26:00.61 | timeMax: 2024-09-18 06:25:59.262 | timeDiff: 26697598.6520002 nFacets: 4 nrow dataFiltered(): 3640 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1296 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 08:50:43.26481 | timeMax: 2024-09-18 08:50:43.265368 | timeDiff: 5184000.0005579 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-20 06:50:43.265 | timeMax: 2024-09-18 06:50:43.265 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_04_autoQC03dia_flex.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw plotClick: NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 10:07:57.523435 | timeMax: 2024-09-18 10:07:57.523995 | timeDiff: 5184000.00056028 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-20 08:07:57.523 | timeMax: 2024-09-18 08:07:57.524 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 10:15:41.209458 | timeMax: 2024-09-18 10:15:41.210079 | timeDiff: 5184000.00062132 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-20 08:15:41.209 | timeMax: 2024-09-18 08:15:41.21 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1328 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/LUMOS_2/analytics_20240917/20240917_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240917/20240917_004_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240917/20240917_002_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240917/20240917_002_autoQC03dda.raw plotClick: NA p3000/Proteomics/LUMOS_2/analytics_20240917/20240917_002_autoQC03dda.raw plotClick: NA p3000/Proteomics/LUMOS_2/analytics_20240917/20240917_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240917/20240917_003_autoQC03dia.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 10:21:38.175913 | timeMax: 2024-09-18 10:21:38.176494 | timeDiff: 5184000.00058103 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-20 08:21:38.176 | timeMax: 2024-09-18 08:21:38.176 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... NA vals$rawrr: TRUE p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_005_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_005_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_005_autoQC03dda.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... p3000/Proteomics/FUSION_2/chiawei_20240812/20240812_002_autoQC03dda.raw NA input timeRange: 31536000 | timeMin: 2024-07-20 08:21:38.176 | timeMax: 2024-09-18 10:24:07.716486 | timeDiff: 5184149.5404861 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... Plotting chromatograms ... input timeRange: 31536000 | timeMin: 2024-07-20 08:21:38.176 | timeMax: 2024-09-18 08:24:07.716 | timeDiff: 5184149.53999996 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-12-02 08:24:09.125 | timeMax: 2024-09-18 08:24:07.716 | timeDiff: 25142398.5910001 nFacets: 4 nrow dataFiltered(): 3796 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1044 using 'ggh4x' package ... p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_005_autoQC03dda.raw NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 11:40:32.786109 | timeMax: 2024-09-18 11:40:32.786774 | timeDiff: 5184000.00066519 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-07-20 09:40:32.78611 | timeMax: 2024-09-18 09:40:32.78677 | timeDiff: 5184000.00065994 autoQC01 module APEX wide nrow: 279158 autoQC01 module APEX long nrow: 768 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 14 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 11:40:44.62098 | timeMax: 2024-09-18 11:40:44.621638 | timeDiff: 5184000.00065732 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 11:40:49.646081 | timeMax: 2024-09-18 11:40:49.646745 | timeDiff: 5184000.00066376 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-20 09:40:49.646 | timeMax: 2024-09-18 09:40:49.647 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_004_autoQC01.raw input timeRange: 7776000 | timeMin: 2024-09-05 09:40:50.838 | timeMax: 2024-09-18 09:40:49.647 | timeDiff: 1123198.80900002 nFacets: 4 nrow dataFiltered(): 336 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_004_autoQC01.raw NA p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_001_autoQC01.raw p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_004_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 11:41:38.803222 | timeMax: 2024-09-18 11:41:38.803797 | timeDiff: 5184000.0005753 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-20 09:41:38.803 | timeMax: 2024-09-18 09:41:38.804 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_004_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-20 12:07:26.560358 | timeMax: 2024-09-18 12:07:26.560919 | timeDiff: 5184000.00056124 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-20 10:07:26.56 | timeMax: 2024-09-18 10:07:26.561 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-29 10:07:27.591 | timeMax: 2024-09-18 10:07:26.561 | timeDiff: 1727998.97000003 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... p28115/Proteomics/FUSION_2/wzhong_20240918_ms0918/20240918_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p28115/Proteomics/FUSION_2/wzhong_20240918_ms0918/20240918_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p28115/Proteomics/FUSION_2/wzhong_20240918_ms0918/20240918_001_autoQC01.raw Plotting chromatograms ... Read 22032 items input timeRange: 7776000 | timeMin: 2024-08-02 10:07:31.328 | timeMax: 2024-09-18 10:07:26.561 | timeDiff: 4060795.23300004 nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-09 10:07:56.677 | timeMax: 2024-09-18 10:07:26.561 | timeDiff: 6134369.88400006 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). NA Plotting chromatograms ... Plotting chromatograms ... p28115/Proteomics/FUSION_2/wzhong_20240906_wz0906/20240906_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p28115/Proteomics/FUSION_2/wzhong_20240906_wz0906/20240906_011_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p28115/Proteomics/FUSION_2/wzhong_20240906_wz0906/20240906_011_autoQC01.raw Plotting chromatograms ... Plotting chromatograms ... p3000/Proteomics/FUSION_2/chiawei_20240916/20240916_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240916/20240916_001_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240916/20240916_001_autoQC01.raw Plotting chromatograms ... NA p28115/Proteomics/FUSION_2/wzhong_20240918_ms0918/20240918_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p28115/Proteomics/FUSION_2/wzhong_20240918_ms0918/20240918_001_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p28115/Proteomics/FUSION_2/wzhong_20240918_ms0918/20240918_001_autoQC01.raw Plotting chromatograms ... NA p28115/Proteomics/FUSION_2/wzhong_20240918_ms0918/20240918_001_autoQC01.raw Plotting chromatograms ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-21 07:39:05.334629 | timeMax: 2024-09-19 07:39:05.335192 | timeDiff: 5184000.00056338 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 672 using 'ggh4x' package ... Warning: Removed 36 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-07-21 05:39:05.335 | timeMax: 2024-09-19 05:39:05.335 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 672 using 'ggh4x' package ... Warning: Removed 36 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_line()`). p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_009_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_002_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 273 using 'ggh4x' package ... p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_010_autoQC03dda.raw p36271/Proteomics/QEXACTIVE_1/analytic_20240916/20240916_C36271_007_autoQC03dda.raw nrow dataFiltered(): 273 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... p3000/Proteomics/QEXACTIVE_1/analytic_20240917/20240917_C3000_010_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-21 08:50:13.341877 | timeMax: 2024-09-19 08:50:13.342442 | timeDiff: 5184000.00056481 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-21 06:50:13.342 | timeMax: 2024-09-19 06:50:13.342 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-07-21 06:50:13.342 | timeMax: 2024-09-19 08:50:19.607104 | timeDiff: 5184006.26510429 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-07-21 06:50:13.342 | timeMax: 2024-09-19 06:50:19.607 | timeDiff: 5184006.2650001 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-21 08:50:28.876704 | timeMax: 2024-09-19 08:50:28.877268 | timeDiff: 5184000.00056386 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-21 06:50:28.877 | timeMax: 2024-09-19 06:50:28.877 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... NA input timeRange: 31536000 | timeMin: 2024-07-21 06:50:28.877 | timeMax: 2024-09-19 08:50:40.91712 | timeDiff: 5184012.04011941 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-07-21 06:50:28.877 | timeMax: 2024-09-19 06:50:40.917 | timeDiff: 5184012.03999996 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_02_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA input timeRange: 31536000 | timeMin: 2024-01-25 06:50:50.757 | timeMax: 2024-09-19 06:50:40.917 | timeDiff: 20563190.1600001 nFacets: 4 nrow dataFiltered(): 2704 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1062 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240918_03_autoQC03dia_flex_new_RF_coil_box.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_03_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240918_03_autoQC03dia_flex_new_RF_coil_box.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240918_03_autoQC03dia_flex_new_RF_coil_box.raw NA nFacets: 3 nrow dataFiltered(): 1872 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1098 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240827/20240827_003_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytics_20240701_auoQC03_old_vs_newBatch/20240708_003_autoQC03dia.raw nFacets: 4 nrow dataFiltered(): 3016 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 684 using 'ggh4x' package ... NA p35555/Proteomics/FUSION_2/mmasek_20240626_test_cyto_mem_prep_inlcusion/20240626_009_autoQC03dia.raw NA p35281/Proteomics/FUSION_2/cmirov_20240529/20240529_007_autoQC03dia.raw NA nFacets: 4 nrow dataFiltered(): 4080 using 'ggh4x' package ... Warning: Removed 24 rows containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 4592 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). p35526/Proteomics/LUMOS_1/roschi_20240614_test_andrew/20240614_007_autoQC01.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240918_05_autoQC01_flex_new_RF_coil_box.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-21 10:01:03.806822 | timeMax: 2024-09-19 10:01:03.807394 | timeDiff: 5184000.00057173 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-21 08:01:03.807 | timeMax: 2024-09-19 08:01:03.807 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... p36093/Proteomics/LUMOS_2/analytic_20240821/20240821_C36093_001_autoQC01_rep.raw p3000/Proteomics/LUMOS_2/analytics_20240917/20240918_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240917/20240918_004_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240917/20240918_004_autoQC01.raw plotClick: nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 546 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-22 07:08:34.180495 | timeMax: 2024-09-20 07:08:34.181053 | timeDiff: 5184000.00055885 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-22 05:08:34.18 | timeMax: 2024-09-20 05:08:34.181 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240918_04_autoQC03dda_flex_new_RF_coil_box.raw NA input timeRange: 31536000 | timeMin: 2024-07-22 05:08:34.18 | timeMax: 2024-09-20 07:09:11.203073 | timeDiff: 5184037.02307248 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-07-22 05:08:34.18 | timeMax: 2024-09-20 05:09:11.203 | timeDiff: 5184037.023 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-20 05:09:12.619 | timeMax: 2024-09-20 05:09:11.203 | timeDiff: 26351998.5840001 nFacets: 4 nrow dataFiltered(): 3588 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1260 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240918_03_autoQC03dia_flex_new_RF_coil_box.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240919_03_autoQC03dia_flex_new_RF_coil_box.raw NA nFacets: 1 nrow dataFiltered(): 1391 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1854 using 'ggh4x' package ... p33274/Proteomics/EXPLORIS_2/analytic_20231123/20231123_C33274_018_autoQC4L.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-22 10:49:40.835712 | timeMax: 2024-09-20 10:49:40.836279 | timeDiff: 5184000.00056624 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 688 using 'ggh4x' package ... Warning: Removed 37 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-07-22 08:49:40.836 | timeMax: 2024-09-20 08:49:40.836 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 688 using 'ggh4x' package ... Warning: Removed 37 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_line()`). NA p36367/Proteomics/QEXACTIVE_1/analytic_20240920/20240920_C36367_001_autoQC01.raw nrow dataFiltered(): 688 using 'ggh4x' package ... Warning: Removed 74 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-22 14:24:40.431712 | timeMax: 2024-09-20 14:24:40.432563 | timeDiff: 5184000.00085115 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-22 12:24:40.432 | timeMax: 2024-09-20 12:24:40.433 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240917/20240918_002_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240917/20240918_003_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytics_20240917/20240918_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-22 14:29:07.197368 | timeMax: 2024-09-20 14:29:07.198306 | timeDiff: 5184000.00093818 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-07-22 12:29:07.197 | timeMax: 2024-09-20 12:29:07.198 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... vals$rawrr: TRUE p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240919_01_autoQC01_flex_new_RF_coil_box.raw NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240919_01_autoQC01_flex_new_RF_coil_box.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240919_01_autoQC01_flex_new_RF_coil_box.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240919_01_autoQC01_flex_new_RF_coil_box.raw Plotting chromatograms ... Read 22032 items plotClick: plotClick: NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240919_01_autoQC01_flex_new_RF_coil_box.raw plotClick: p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240919_01_autoQC01_flex_new_RF_coil_box.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240919_01_autoQC01_flex_new_RF_coil_box.raw plotClick: NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... vals$rawrr: TRUE NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240919_03_autoQC03dia_flex_new_RF_coil_box.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240919_03_autoQC03dia_flex_new_RF_coil_box.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-24 18:29:30.196578 | timeMax: 2024-09-22 18:29:30.197137 | timeDiff: 5184000.00055981 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1200 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-24 16:29:30.197 | timeMax: 2024-09-22 16:29:30.197 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-25 07:54:29.240916 | timeMax: 2024-09-23 07:54:29.241476 | timeDiff: 5184000.00055957 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 05:54:29.241 | timeMax: 2024-09-23 05:54:29.241 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-25 07:58:20.343998 | timeMax: 2024-09-23 07:58:20.344606 | timeDiff: 5184000.00060821 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 05:58:20.344 | timeMax: 2024-09-23 05:58:20.345 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... NA input timeRange: 31536000 | timeMin: 2024-07-25 05:58:20.344 | timeMax: 2024-09-23 07:58:40.524227 | timeDiff: 5184020.18022656 nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-07-25 05:58:20.344 | timeMax: 2024-09-23 05:58:40.524 | timeDiff: 5184020.17999983 nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-22 05:58:41.893 | timeMax: 2024-09-23 05:58:40.524 | timeDiff: 29116798.631 nFacets: 4 nrow dataFiltered(): 7360 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values or values outside the scale range (`geom_point()`). p34351/Proteomics/LUMOS_1/analytic_20240226/20240226_C34351_007_autoQC01.raw p34007/Proteomics/LUMOS_1/roschi_20240131_YEAST_DIA_FASP/20240131_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34007/Proteomics/LUMOS_1/roschi_20240131_YEAST_DIA_FASP/20240131_007_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p34007/Proteomics/LUMOS_1/roschi_20240131_YEAST_DIA_FASP/20240131_007_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p34007/Proteomics/LUMOS_1/roschi_20240131_YEAST_DIA_FASP/20240131_007_autoQC01.raw p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw NA p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw Reading raw file: /srv/www/htdocs//p30646/Proteomics/LUMOS_1/gnarduzzi_20240320/20240320_004_autoQC01.raw Plotting chromatograms ... Read 22032 items p34007/Proteomics/LUMOS_1/roschi_20240123_YEAST_DIA/20240123_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34007/Proteomics/LUMOS_1/roschi_20240123_YEAST_DIA/20240123_007_autoQC01.raw Reading raw file: /srv/www/htdocs//p34007/Proteomics/LUMOS_1/roschi_20240123_YEAST_DIA/20240123_007_autoQC01.raw Plotting chromatograms ... Read 22032 items p25334/Proteomics/LUMOS_1/dlesli_20240119_DLP230/20240119_001_autoQC01.raw NA p35261/Proteomics/LUMOS_1/analytic_20240522/20240522_C35261_001_autoQC01.raw p35261/Proteomics/LUMOS_1/analytic_20240522/20240522_C35261_001a_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p35261/Proteomics/LUMOS_1/analytic_20240522/20240522_C35261_001a_autoQC01.raw Reading raw file: /srv/www/htdocs//p35261/Proteomics/LUMOS_1/analytic_20240522/20240522_C35261_001a_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p34351/Proteomics/LUMOS_1/analytic_20240226/20240226_C34351_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34351/Proteomics/LUMOS_1/analytic_20240226/20240226_C34351_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p34351/Proteomics/LUMOS_1/analytic_20240226/20240226_C34351_001_autoQC01.raw Plotting chromatograms ... Read 22032 items Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240221_034_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20231020_DIA_yeast_mouse/20231020_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231020_DIA_yeast_mouse/20231020_012_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20231020_DIA_yeast_mouse/20231020_012_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p32990/Proteomics/LUMOS_1/analytic_20231013/20231013_C32990_007_autoQC01.raw NA vals$rawDiag: TRUE plotChargeState reading index for 20231020_012_autoQC01.raw... vals$rawrr: FALSE p29369/Proteomics/LUMOS_1/moslu_20231205_231212_TTTS_samples/20231205_008_autoQC01.raw NA p34610/Proteomics/LUMOS_1/mwolleb_20240409/20240409_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34610/Proteomics/LUMOS_1/mwolleb_20240409/20240409_001_autoQC01.raw Reading raw file: /srv/www/htdocs//p34610/Proteomics/LUMOS_1/mwolleb_20240409/20240409_001_autoQC01.raw Plotting chromatograms ... Read 22032 items reading index for 20240409_001_autoQC01.raw... plotTicBasepeak plotScanTime plotMassDistribution NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-25 08:31:31.309916 | timeMax: 2024-09-23 08:31:31.310577 | timeDiff: 5184000.0006609 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-07-25 06:31:31.31 | timeMax: 2024-09-23 06:31:31.311 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-09-16 08:32:01.17448 | timeMax: 2024-09-23 08:32:01.174574 | timeDiff: 604800.000094175 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-09-16 08:42:12.295091 | timeMax: 2024-09-23 08:42:12.29515 | timeDiff: 604800.000059366 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-25 08:48:33.05521 | timeMax: 2024-09-23 08:48:33.0559 | timeDiff: 5184000.00068998 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 06:48:33.055 | timeMax: 2024-09-23 06:48:33.056 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-25 09:19:39.674477 | timeMax: 2024-09-23 09:19:39.675084 | timeDiff: 5184000.00060773 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1200 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 07:19:39.674 | timeMax: 2024-09-23 07:19:39.675 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240920/20240920_004_autoQC01_20240920215252.raw NA nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240920/20240920_002_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-25 14:11:05.432457 | timeMax: 2024-09-23 14:11:05.433089 | timeDiff: 5184000.00063205 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 672 using 'ggh4x' package ... Warning: Removed 36 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-07-25 12:11:05.432 | timeMax: 2024-09-23 12:11:05.433 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 672 using 'ggh4x' package ... Warning: Removed 36 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 11 rows containing missing values or values outside the scale range (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-25 15:06:26.332527 | timeMax: 2024-09-23 15:06:26.333208 | timeDiff: 5184000.00068092 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:06:26.33253 | timeMax: 2024-09-23 13:06:26.33321 | timeDiff: 5184000.00067997 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:06:26.333 | timeMax: 2024-09-23 13:06:26.333 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240923/20240923_002_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240923/20240923_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-25 15:25:46.721339 | timeMax: 2024-09-23 15:25:46.721918 | timeDiff: 5184000.0005796 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1200 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:25:46.721 | timeMax: 2024-09-23 13:25:46.722 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... NA nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240920/20240920_003_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240920/20240920_002_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240920/20240920_002_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240920/20240920_002_autoQC03dda.raw NA plotClick: p3000/Proteomics/LUMOS_2/analytics_20240920/20240920_002_autoQC03dda.raw Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 279477 autoQC01 module APEX long nrow: 900 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-25 15:29:36.150527 | timeMax: 2024-09-23 15:29:36.151205 | timeDiff: 5184000.0006783 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:29:36.15053 | timeMax: 2024-09-23 13:29:36.1512 | timeDiff: 5184000.00066996 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-25 13:29:36.151 | timeMax: 2024-09-23 13:29:36.151 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240923/20240923_002_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-26 07:04:27.759836 | timeMax: 2024-09-24 07:04:27.760401 | timeDiff: 5184000.00056529 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1152 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-26 05:04:27.76 | timeMax: 2024-09-24 05:04:27.76 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-09-17 09:04:55.218174 | timeMax: 2024-09-24 09:04:55.218221 | timeDiff: 604800.000046968 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-26 09:51:00.22503 | timeMax: 2024-09-24 09:51:00.225605 | timeDiff: 5184000.00057435 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-07-26 07:51:00.225 | timeMax: 2024-09-24 07:51:00.226 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-26 10:42:11.946456 | timeMax: 2024-09-24 10:42:11.94703 | timeDiff: 5184000.00057387 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1200 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-26 08:42:11.946 | timeMax: 2024-09-24 08:42:11.947 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240909/20240909_006_autoQC01.raw NA nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 546 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-26 14:02:18.366079 | timeMax: 2024-09-24 14:02:18.366648 | timeDiff: 5184000.00056887 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 688 using 'ggh4x' package ... Warning: Removed 37 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-07-26 12:02:18.366 | timeMax: 2024-09-24 12:02:18.367 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 688 using 'ggh4x' package ... Warning: Removed 37 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_line()`). nrow dataFiltered(): 688 using 'ggh4x' package ... Warning: Removed 74 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 12 rows containing missing values or values outside the scale range (`geom_line()`). p36390/Proteomics/QEXACTIVE_1/analytic_20240924/20240924_C36390_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-28 00:14:41.569474 | timeMax: 2024-09-26 00:14:41.570038 | timeDiff: 5184000.00056386 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-28 09:10:31.312216 | timeMax: 2024-09-26 09:10:31.312789 | timeDiff: 5184000.00057292 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-28 07:10:31.31222 | timeMax: 2024-09-26 07:10:31.31279 | timeDiff: 5184000.0005703 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-28 07:10:31.312 | timeMax: 2024-09-26 07:10:31.313 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA NA p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_012_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-28 09:41:56.072732 | timeMax: 2024-09-26 09:41:56.073303 | timeDiff: 5184000.00057101 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-07-28 07:41:56.073 | timeMax: 2024-09-26 07:41:56.073 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 704 using 'ggh4x' package ... Warning: Removed 37 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). p36390/Proteomics/QEXACTIVE_1/analytic_20240924/20240924_C36390_004_autoQC01.raw p36390/Proteomics/QEXACTIVE_1/analytic_20240924/20240924_C36390_001_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 286 using 'ggh4x' package ... NA p36390/Proteomics/QEXACTIVE_1/analytic_20240924/20240924_C36390_005_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-28 17:19:01.63013 | timeMax: 2024-09-26 17:19:01.630697 | timeDiff: 5184000.00056744 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-28 15:19:01.63 | timeMax: 2024-09-26 15:19:01.631 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... NA p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_008_autoQC01.raw NA p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_008_autoQC01.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-29 07:36:35.410561 | timeMax: 2024-09-27 07:36:35.411128 | timeDiff: 5184000.00056744 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 768 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-07-29 05:36:35.411 | timeMax: 2024-09-27 05:36:35.411 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). NA p36372/Proteomics/QEXACTIVE_1/analytic_20240926/20240926_C36372_004_autoQC01.raw p36372/Proteomics/QEXACTIVE_1/analytic_20240926/20240926_C36372_004_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 299 using 'ggh4x' package ... NA p36372/Proteomics/QEXACTIVE_1/analytic_20240926/20240926_C36372_005_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-29 11:27:26.278602 | timeMax: 2024-09-27 11:27:26.279167 | timeDiff: 5184000.00056553 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-29 09:27:26.279 | timeMax: 2024-09-27 09:27:26.279 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... NA nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240923/20240923_005_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240923/20240923_005_autoQC03dda.raw NA plotClick: p3000/Proteomics/LUMOS_2/analytics_20240923/20240923_005_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: plotClick: fn has changed to /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-07-29 14:01:21.72692 | timeMax: 2024-09-27 14:01:21.727493 | timeDiff: 5184000.0005722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 2 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-29 12:01:21.72692 | timeMax: 2024-09-27 12:01:21.72749 | timeDiff: 5184000.00057006 nFacets: 2 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-29 12:01:21.727 | timeMax: 2024-09-27 12:01:21.727 | timeDiff: 5184000 nFacets: 2 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw plotClick: NA p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw plotClick: NA p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw plotClick: NA NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_2/analytics_20240923/20240923_005_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240923/20240923_005_autoQC03dda.raw Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 279741 autoQC01 module APEX long nrow: 876 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-09-23 08:04:55.390408 | timeMax: 2024-09-30 08:04:55.390449 | timeDiff: 604800.000041246 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-01 10:34:53.546265 | timeMax: 2024-09-30 10:34:53.546836 | timeDiff: 5184000.00057125 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 864 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-01 08:34:53.546 | timeMax: 2024-09-30 08:34:53.547 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 864 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... NA p28115/Proteomics/FUSION_2/wzhong_20240918_ms0918/20240918_013_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-01 11:00:31.880281 | timeMax: 2024-09-30 11:00:31.880853 | timeDiff: 5184000.00057197 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-01 09:00:31.88 | timeMax: 2024-09-30 09:00:31.881 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... NA p36411/Proteomics/LUMOS_2/analytic_20240927/20240927_C36411_015_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36411/Proteomics/LUMOS_2/analytic_20240927/20240927_C36411_015_autoQC01.raw nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 546 using 'ggh4x' package ... NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-01 15:08:37.154018 | timeMax: 2024-09-30 15:08:37.154588 | timeDiff: 5184000.00056958 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-01 13:08:37.15402 | timeMax: 2024-09-30 13:08:37.15459 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-01 13:08:37.154 | timeMax: 2024-09-30 13:08:37.155 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240930/20240930_002_autoQC03dda.raw nrow dataFiltered(): 299 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240923/20240923_003_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-01 16:04:28.688878 | timeMax: 2024-09-30 16:04:28.689611 | timeDiff: 5184000.00073242 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-01 14:04:28.689 | timeMax: 2024-09-30 14:04:28.69 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-01 16:13:06.115047 | timeMax: 2024-09-30 16:13:06.115654 | timeDiff: 5184000.00060701 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-01 14:13:06.115 | timeMax: 2024-09-30 14:13:06.116 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/FUSION_2/chiawei_20240930/20240930_003_autoQC01.raw vals$rawrr: TRUE plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240930/20240930_003_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/FUSION_2/chiawei_20240930/20240930_003_autoQC01.raw Plotting chromatograms ... Read 22032 items fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-02 09:06:55.017919 | timeMax: 2024-10-01 09:06:55.018482 | timeDiff: 5184000.00056314 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-02 07:06:55.018 | timeMax: 2024-10-01 07:06:55.018 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-08-02 07:06:55.018 | timeMax: 2024-10-01 09:07:12.0588 | timeDiff: 5184017.04080009 nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-08-02 07:06:55.018 | timeMax: 2024-10-01 07:07:12.059 | timeDiff: 5184017.04100013 nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-13 07:07:28.845 | timeMax: 2024-10-01 07:07:12.059 | timeDiff: 27907183.214 nFacets: 4 nrow dataFiltered(): 3744 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1350 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 31536000 | timeMin: 2024-08-02 10:46:55.060768 | timeMax: 2024-10-01 10:46:55.061357 | timeDiff: 5184000.00058818 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 31536000 | timeMin: 2024-08-02 08:46:55.061 | timeMax: 2024-10-01 08:46:55.061 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 944 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 31536000 | timeMin: 2024-08-02 15:31:32.974331 | timeMax: 2024-10-01 15:31:32.974892 | timeDiff: 5184000.00056148 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 944 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-08-02 13:31:32.974 | timeMax: 2024-10-01 13:31:32.975 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_03_autoQC03dia_flex_new_Quad.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_03_autoQC03dia_flex_new_Quad.raw NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-02 15:59:24.858993 | timeMax: 2024-10-01 15:59:24.859566 | timeDiff: 5184000.0005734 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-02 16:24:08.221414 | timeMax: 2024-10-01 16:24:08.221975 | timeDiff: 5184000.00056171 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-02 14:24:08.221 | timeMax: 2024-10-01 14:24:08.222 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... p28115/Proteomics/FUSION_2/wzhong_20240930_20240930_ms0930/20240930_020_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-02 16:59:14.585599 | timeMax: 2024-10-01 16:59:14.586163 | timeDiff: 5184000.0005641 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-02 14:59:14.586 | timeMax: 2024-10-01 14:59:14.586 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 0 NA nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 360 using 'ggh4x' package ... p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_308_autoQC03dia_06.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_308_autoQC03dia_06.d.zip plotClick: fn has changed to /srv/www/htdocs//p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_308_autoQC03dia_06.d.zip p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_206_autoQC03dia_04.d.zip plotClick: fn has changed to /srv/www/htdocs//p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_206_autoQC03dia_04.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_308_autoQC03dia_06.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240924/zip/20240924_003_autoQC03dia.d.zip p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_002_autoQC03dia_00.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_002_autoQC03dia_00.d.zip p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_104_autoQC03dia_02.d.zip p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_155_autoQC03dia_03.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_206_autoQC03dia_04.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_155_autoQC03dia_03.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_155_autoQC03dia_03.d.zip p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_104_autoQC03dia_02.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_257_autoQC03dia_05.d.zip p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_308_autoQC03dia_06.d.zip NA nrow dataFiltered(): 360 using 'ggh4x' package ... p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_206_autoQC03dia_04.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_206_autoQC03dia_04.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 08:48:44.962533 | timeMax: 2024-10-02 08:48:44.963254 | timeDiff: 5184000.0007205 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-03 06:48:44.963 | timeMax: 2024-10-02 06:48:44.963 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 960 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 08:54:28.844677 | timeMax: 2024-10-02 08:54:28.845242 | timeDiff: 5184000.00056458 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-08-03 06:54:28.845 | timeMax: 2024-10-02 06:54:28.845 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 378 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_359_autoQC03dia_07.d.zip p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_359_autoQC03dia_07.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 11:45:56.584849 | timeMax: 2024-10-02 11:45:56.586038 | timeDiff: 5184000.00118923 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-03 09:45:56.585 | timeMax: 2024-10-02 09:45:56.586 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//p28115/Proteomics/FUSION_2/wzhong_20240930_20240930_ms0930/20240930_019_autoQC01.raw p28115/Proteomics/FUSION_2/wzhong_20240930_20240930_ms0930/20240930_019_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 12:23:20.551004 | timeMax: 2024-10-02 12:23:20.552869 | timeDiff: 5184000.00186467 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 2 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-03 10:23:20.551 | timeMax: 2024-10-02 10:23:20.55287 | timeDiff: 5184000.00186992 nFacets: 2 nFacets: 1 input timeRange: 7776000 | timeMin: 2024-08-03 10:23:20.551 | timeMax: 2024-10-02 10:23:20.553 | timeDiff: 5184000.00199986 nFacets: 2 nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 378 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_359_autoQC03dia_07.d.zip Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 12:41:02.490832 | timeMax: 2024-10-02 12:41:02.49221 | timeDiff: 5184000.00137854 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-03 10:41:02.491 | timeMax: 2024-10-02 10:41:02.492 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 14:13:51.11975 | timeMax: 2024-10-02 14:13:51.121382 | timeDiff: 5184000.00163221 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-03 12:13:51.12 | timeMax: 2024-10-02 12:13:51.121 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 378 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_359_autoQC03dia_07.d.zip p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_359_autoQC03dia_07.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 14:14:12.898484 | timeMax: 2024-10-02 14:14:12.899475 | timeDiff: 5184000.00099158 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-03 12:14:12.898 | timeMax: 2024-10-02 12:14:12.899 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 378 using 'ggh4x' package ... NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_359_autoQC03dia_07.d.zip p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_308_autoQC03dia_06.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 14:16:36.405068 | timeMax: 2024-10-02 14:16:36.405936 | timeDiff: 5184000.00086737 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-08-03 12:16:36.405 | timeMax: 2024-10-02 12:16:36.406 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 378 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 14:25:32.050474 | timeMax: 2024-10-02 14:25:32.051933 | timeDiff: 5184000.00145864 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-03 12:25:32.05 | timeMax: 2024-10-02 12:25:32.052 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 0 Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 280071 autoQC01 module APEX long nrow: 0 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 378 using 'ggh4x' package ... p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_359_autoQC03dia_07.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 14:28:22.777129 | timeMax: 2024-10-02 14:28:22.778647 | timeDiff: 5184000.00151849 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-03 12:28:22.777 | timeMax: 2024-10-02 12:28:22.779 | timeDiff: 5184000.00200009 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 14:45:07.26899 | timeMax: 2024-10-02 14:45:07.270004 | timeDiff: 5184000.00101399 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-03 12:45:07.269 | timeMax: 2024-10-02 12:45:07.27 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-09-25 14:45:59.476352 | timeMax: 2024-10-02 14:45:59.476404 | timeDiff: 604800.000051975 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 15:23:51.015701 | timeMax: 2024-10-02 15:23:51.017388 | timeDiff: 5184000.00168705 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-03 13:23:51.016 | timeMax: 2024-10-02 13:23:51.017 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 396 using 'ggh4x' package ... p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_410_autoQC03dia_08.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 15:35:22.653926 | timeMax: 2024-10-02 15:35:22.655524 | timeDiff: 5184000.0015974 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-03 13:35:22.654 | timeMax: 2024-10-02 13:35:22.656 | timeDiff: 5184000.00199986 nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 396 using 'ggh4x' package ... p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_410_autoQC03dia_08.d.zip plotClick: fn has changed to /srv/www/htdocs//NA NA plotClick: fn has changed to /srv/www/htdocs//p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_410_autoQC03dia_08.d.zip p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20240925/zip/20240925_410_autoQC03dia_08.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-03 15:55:54.548178 | timeMax: 2024-10-02 15:55:54.549129 | timeDiff: 5184000.00095153 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-08-03 13:55:54.548 | timeMax: 2024-10-02 13:55:54.549 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241001/zip/20241001_002_autoQC03dia_00.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241001/zip/20241001_002_autoQC03dia_00.d.zip Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 09:18:45.655337 | timeMax: 2024-10-03 09:18:45.6559 | timeDiff: 5184000.00056362 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-08-04 07:18:45.655 | timeMax: 2024-10-03 07:18:45.656 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241001/zip/20241001_002_autoQC03dia_00.d.zip plotClick: fn has changed to /srv/www/htdocs//p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241001/zip/20241001_002_autoQC03dia_00.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 10:04:14.622855 | timeMax: 2024-10-03 10:04:14.623426 | timeDiff: 5184000.00057054 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-04 08:04:14.623 | timeMax: 2024-10-03 08:04:14.623 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 10:20:35.220454 | timeMax: 2024-10-03 10:20:35.221021 | timeDiff: 5184000.0005672 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-04 08:20:35.22 | timeMax: 2024-10-03 08:20:35.221 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 10:59:21.621336 | timeMax: 2024-10-03 10:59:21.621901 | timeDiff: 5184000.00056458 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-08-04 08:59:21.621 | timeMax: 2024-10-03 08:59:21.622 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241001/zip/20241001_002_autoQC03dia_00.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 11:06:09.447705 | timeMax: 2024-10-03 11:06:09.44827 | timeDiff: 5184000.00056458 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-08-04 09:06:09.448 | timeMax: 2024-10-03 09:06:09.448 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 0 NA nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 11:26:00.156468 | timeMax: 2024-10-03 11:26:00.157611 | timeDiff: 5184000.00114274 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-04 09:26:00.156 | timeMax: 2024-10-03 09:26:00.158 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 0 NA nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241001/zip/20241001_002_autoQC03dia_00.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 11:30:51.36959 | timeMax: 2024-10-03 11:30:51.370669 | timeDiff: 5184000.00107908 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-04 09:30:51.37 | timeMax: 2024-10-03 09:30:51.371 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 11:38:23.978285 | timeMax: 2024-10-03 11:38:23.979258 | timeDiff: 5184000.00097299 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-04 09:38:23.978 | timeMax: 2024-10-03 09:38:23.979 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 12:04:01.970755 | timeMax: 2024-10-03 12:04:01.971327 | timeDiff: 5184000.0005722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-04 10:04:01.971 | timeMax: 2024-10-03 10:04:01.971 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 0 NA nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 432 using 'ggh4x' package ... p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241001/zip/20241001_002_autoQC03dia_00.d.zip plotClick: fn has changed to /srv/www/htdocs//p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241001/zip/20241001_002_autoQC03dia_00.d.zip NA p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241001/zip/20241001_053_autoQC03dia_01.d.zip NA nFacets: 1 nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 299 using 'ggh4x' package ... p36442/Proteomics/QEXACTIVE_1/analytic_20240930/20240930_C36442_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36442/Proteomics/QEXACTIVE_1/analytic_20240930/20240930_C36442_007_autoQC03dda.raw Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 280126 autoQC01 module APEX long nrow: 552 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 30 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 12:48:04.038799 | timeMax: 2024-10-03 12:48:04.039399 | timeDiff: 5184000.00060034 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 752 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-08-04 10:48:04.039 | timeMax: 2024-10-03 10:48:04.039 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). NA p36463/Proteomics/QEXACTIVE_1/analytic_20241003/20241003_C36463_001_autoQC01.raw NA p36463/Proteomics/QEXACTIVE_1/analytic_20241003/20241003_C36463_001_autoQC01.raw NA p36463/Proteomics/QEXACTIVE_1/analytic_20241003/20241003_C36463_001_autoQC01.raw NA p36463/Proteomics/QEXACTIVE_1/analytic_20241003/20241003_C36463_001_autoQC01.raw NA p36463/Proteomics/QEXACTIVE_1/analytic_20241003/20241003_C36463_001_autoQC01.raw NA p36463/Proteomics/QEXACTIVE_1/analytic_20241003/20241003_C36463_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 13:02:29.856678 | timeMax: 2024-10-03 13:02:29.857262 | timeDiff: 5184000.00058389 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 input timeRange: 7776000 | timeMin: 2024-08-04 11:02:29.857 | timeMax: 2024-10-03 11:02:29.857 | timeDiff: 5184000 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240827_03_autoQC03dia_flex.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 13:52:33.360045 | timeMax: 2024-10-03 13:52:33.360612 | timeDiff: 5184000.00056696 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 768 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 5 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-08-04 11:52:33.36 | timeMax: 2024-10-03 11:52:33.361 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 768 using 'ggh4x' package ... Warning: Removed 39 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 5 rows containing missing values or values outside the scale range (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 14:02:29.634761 | timeMax: 2024-10-03 14:02:29.635335 | timeDiff: 5184000.00057435 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-04 12:02:29.635 | timeMax: 2024-10-03 12:02:29.635 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... p36150/Proteomics/QEXACTIVE_1/analytic_20240826/20240826_C36150_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 15:30:53.601821 | timeMax: 2024-10-03 15:30:53.602428 | timeDiff: 5184000.00060701 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-04 13:30:53.602 | timeMax: 2024-10-03 13:30:53.602 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). NA p28115/Proteomics/FUSION_2/wzhong_20240930_20240930_ms0930/20240930_011_autoQC01.raw NA p28115/Proteomics/FUSION_2/wzhong_20240930_20240930_ms0930/20240930_011_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-04 16:04:07.927803 | timeMax: 2024-10-03 16:04:07.928372 | timeDiff: 5184000.00056982 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-04 14:04:07.928 | timeMax: 2024-10-03 14:04:07.928 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/EXPLORIS_1/lkunz_20240826/20240826_001_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... NA p36302/Proteomics/EXPLORIS_1/analytic_20240913/20240913_004_autoQC01.raw p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_008_autoQC01.raw NA p36331/Proteomics/EXPLORIS_1/roschi_20241001_test_TMT10plex/20241002_004_autoQC01.raw p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_008_autoQC01.raw NA p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_008_autoQC01.raw plotClick: vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_008_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_008_autoQC01.raw plotClick: NA Plotting chromatograms ... Plotting chromatograms ... p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson_DIA_rr/20240813_008_autoQC01.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240917/20240917_008_autoQC01.raw p36331/Proteomics/EXPLORIS_1/roschi_20241001_test_TMT10plex/20241002_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36331/Proteomics/EXPLORIS_1/roschi_20241001_test_TMT10plex/20241002_004_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p36331/Proteomics/EXPLORIS_1/roschi_20241001_test_TMT10plex/20241002_004_autoQC01.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... Plotting chromatograms ... NA p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_008_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_008_autoQC01.raw Plotting chromatograms ... p36331/Proteomics/EXPLORIS_1/roschi_20241001_test_TMT10plex/20241002_004_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36331/Proteomics/EXPLORIS_1/roschi_20241001_test_TMT10plex/20241002_004_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p36331/Proteomics/EXPLORIS_1/roschi_20241001_test_TMT10plex/20241002_004_autoQC01.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... plotClick: NA p3000/Proteomics/EXPLORIS_1/lkunz_20240827/20240827_003_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240827/20240827_003_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240827/20240827_003_autoQC01.raw Plotting chromatograms ... NA p36080/Proteomics/EXPLORIS_1/analytic_20240823/20240823_C36080_015_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36080/Proteomics/EXPLORIS_1/analytic_20240823/20240823_C36080_015_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p36080/Proteomics/EXPLORIS_1/analytic_20240823/20240823_C36080_015_autoQC01.raw Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Warning in predict.lm(fit, data.frame(xc = xx)) : prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases Plotting chromatograms ... NA p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw plotClick: fn has changed to /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw Read 22032 items Reading raw file: /srv/www/htdocs//p35853/Proteomics/EXPLORIS_1/juangerez_20240813_iPSCs_Parkinson/20240813_001_autoQC01_rr.raw Plotting chromatograms ... NA p24073/Proteomics/EXPLORIS_1/wilkin_20240905_20240905_SW_PERU_LITHBOOZE/20240905_019_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p24073/Proteomics/EXPLORIS_1/pecnikjaruschka_20240905_20240905_JP_immune_proteins_Ypres/20240905_019_autoQC01.raw Read 22032 items Reading raw file: /srv/www/htdocs//p24073/Proteomics/EXPLORIS_1/pecnikjaruschka_20240905_20240905_JP_immune_proteins_Ypres/20240905_019_autoQC01.raw Plotting chromatograms ... p24073/Proteomics/EXPLORIS_1/pecnikjaruschka_20240905_20240905_JP_immune_proteins_Ypres/20240905_019_autoQC01.raw NA p3000/Proteomics/EXPLORIS_1/lkunz_20240930/20240930_002_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-05 09:24:09.708872 | timeMax: 2024-10-04 09:24:09.709446 | timeDiff: 5184000.00057364 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-05 07:24:09.709 | timeMax: 2024-10-04 07:24:09.709 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-05 14:53:17.712033 | timeMax: 2024-10-04 14:53:17.712632 | timeDiff: 5184000.00059938 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1072 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-05 12:53:17.712 | timeMax: 2024-10-04 12:53:17.713 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-05 16:32:31.466975 | timeMax: 2024-10-04 16:32:31.467555 | timeDiff: 5184000.00057983 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-05 14:32:31.467 | timeMax: 2024-10-04 14:32:31.468 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1088 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-08 11:19:47.412229 | timeMax: 2024-10-07 11:19:47.412804 | timeDiff: 5184000.00057507 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1072 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-08 09:19:47.412 | timeMax: 2024-10-07 09:19:47.413 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-08 14:00:08.078153 | timeMax: 2024-10-07 14:00:08.078723 | timeDiff: 5184000.00056934 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-08 12:00:08.078 | timeMax: 2024-10-07 12:00:08.079 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 2 nrow dataFiltered(): 546 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-08 14:38:51.81649 | timeMax: 2024-10-07 14:38:51.81705 | timeDiff: 5184000.00055981 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-08 14:48:21.22689 | timeMax: 2024-10-07 14:48:21.227462 | timeDiff: 5184000.00057173 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-08 12:48:21.227 | timeMax: 2024-10-07 12:48:21.227 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-08 15:25:50.453404 | timeMax: 2024-10-07 15:25:50.454046 | timeDiff: 5184000.00064135 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-08 13:25:50.4534 | timeMax: 2024-10-07 13:25:50.45405 | timeDiff: 5184000.00065017 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-08 13:25:50.453 | timeMax: 2024-10-07 13:25:50.454 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_017_autoQC03dda.raw NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-08 16:45:59.24845 | timeMax: 2024-10-07 16:45:59.249028 | timeDiff: 5184000.00057817 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-08 14:45:59.248 | timeMax: 2024-10-07 14:45:59.249 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-08 16:58:53.44593 | timeMax: 2024-10-07 16:58:53.44664 | timeDiff: 5184000.00071073 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-08 14:58:53.446 | timeMax: 2024-10-07 14:58:53.447 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 2 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-08 17:24:51.765498 | timeMax: 2024-10-07 17:24:51.766067 | timeDiff: 5184000.00056911 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-08 15:24:51.766 | timeMax: 2024-10-07 15:24:51.766 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/lkunz_20240930/20240930_002_autoQC03dda.raw NA p36445/Proteomics/EXPLORIS_2/analytic_20241001/20241001_C36445_007_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-08 17:35:45.64829 | timeMax: 2024-10-07 17:35:45.64952 | timeDiff: 5184000.00122976 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-08 15:35:45.64829 | timeMax: 2024-10-07 15:35:45.64952 | timeDiff: 5184000.00122976 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-08 15:35:45.648 | timeMax: 2024-10-07 15:35:45.65 | timeDiff: 5184000.00200009 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_017_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-08 17:38:45.746603 | timeMax: 2024-10-07 17:38:45.748058 | timeDiff: 5184000.00145531 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-08 15:38:45.747 | timeMax: 2024-10-07 15:38:45.748 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 2 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... NA vals$rawrr: TRUE p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_011_autoQC03dia.raw NA p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_011_autoQC03dia.raw NA p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_011_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_011_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_011_autoQC03dia.raw Plotting chromatograms ... Read 22032 items plotClick: p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_009_autoQC03dia.raw Plotting chromatograms ... Read 22032 items p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_011_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_011_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_011_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_011_autoQC03dia.raw plotClick: plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp NA plotClick: Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_006_autoQC01.raw vals$rawrr: TRUE NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_006_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 08:05:37.796826 | timeMax: 2024-10-08 08:05:37.797392 | timeDiff: 5184000.00056624 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 06:05:37.79683 | timeMax: 2024-10-08 06:05:37.79739 | timeDiff: 5184000.00055981 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 06:05:37.797 | timeMax: 2024-10-08 06:05:37.797 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/pgehrig_20240930_Nic_Dimet/20240930_15_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 08:06:41.166689 | timeMax: 2024-10-08 08:06:41.167437 | timeDiff: 5184000.00074768 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 06:06:41.16669 | timeMax: 2024-10-08 06:06:41.16744 | timeDiff: 5184000.00075006 nFacets: 4 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 06:06:41.167 | timeMax: 2024-10-08 06:06:41.167 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw NA Warning in observe() : timeDiff is higher than timeRange input timeRange: 7776000 | timeMin: 2024-09-10 06:05:39.39 | timeMax: 2024-10-08 06:05:37.797 | timeDiff: 2419198.40699983 nFacets: 4 nrow dataFiltered(): 286 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-15 06:07:37.587 | timeMax: 2024-10-08 06:05:37.797 | timeDiff: 1987080.21000004 nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw NA NA nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 416 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_03_autoQC03dda_flex_no_ETD.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 09:27:11.809322 | timeMax: 2024-10-08 09:27:11.809886 | timeDiff: 5184000.00056434 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 09:27:15.491089 | timeMax: 2024-10-08 09:27:15.491654 | timeDiff: 5184000.00056458 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 07:27:11.809 | timeMax: 2024-10-08 07:27:11.81 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 752 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 07:27:15.491 | timeMax: 2024-10-08 07:27:15.492 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw NA NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_03_autoQC03dda_flex_no_ETD.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_03_autoQC03dda_flex_no_ETD.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_03_autoQC03dda_flex_no_ETD.raw plotClick: p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_03_autoQC03dda_flex_no_ETD.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_03_autoQC03dda_flex_no_ETD.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 09:45:17.253533 | timeMax: 2024-10-08 09:45:17.254103 | timeDiff: 5184000.00056982 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 07:45:17.254 | timeMax: 2024-10-08 07:45:17.254 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_006_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 09:46:14.074012 | timeMax: 2024-10-08 09:46:14.074578 | timeDiff: 5184000.00056624 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 09:46:17.747292 | timeMax: 2024-10-08 09:46:17.747966 | timeDiff: 5184000.00067401 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 07:46:14.074 | timeMax: 2024-10-08 07:46:14.075 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1232 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 07:46:17.747 | timeMax: 2024-10-08 07:46:17.748 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 10:08:20.154391 | timeMax: 2024-10-08 10:08:20.155032 | timeDiff: 5184000.00064111 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 08:08:20.154 | timeMax: 2024-10-08 08:08:20.155 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? vals$rawrr: TRUE p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 10:39:09.910286 | timeMax: 2024-10-08 10:39:09.910913 | timeDiff: 5184000.00062752 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-08-09 08:39:09.91 | timeMax: 2024-10-08 08:39:09.911 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 11:07:53.434641 | timeMax: 2024-10-08 11:07:53.43521 | timeDiff: 5184000.00056911 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-08-09 09:07:53.43464 | timeMax: 2024-10-08 09:07:53.43521 | timeDiff: 5184000.00057006 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 09:07:53.435 | timeMax: 2024-10-08 09:07:53.435 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 11:14:23.654524 | timeMax: 2024-10-08 11:14:23.655154 | timeDiff: 5184000.00063062 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 09:14:23.655 | timeMax: 2024-10-08 09:14:23.655 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 11:14:42.480183 | timeMax: 2024-10-08 11:14:42.480752 | timeDiff: 5184000.00056958 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 09:14:42.48 | timeMax: 2024-10-08 09:14:42.481 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 11:25:16.801147 | timeMax: 2024-10-08 11:25:16.801715 | timeDiff: 5184000.00056791 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-09 09:25:16.801 | timeMax: 2024-10-08 09:25:16.802 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 11:25:21.456339 | timeMax: 2024-10-08 11:25:21.456922 | timeDiff: 5184000.0005827 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-08-09 09:25:21.45634 | timeMax: 2024-10-08 09:25:21.45692 | timeDiff: 5184000.00057983 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 09:25:21.456 | timeMax: 2024-10-08 09:25:21.457 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 11:53:28.157376 | timeMax: 2024-10-08 11:53:28.158125 | timeDiff: 5184000.00074959 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 09:53:28.157 | timeMax: 2024-10-08 09:53:28.158 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_009_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_009_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_009_autoQC01.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_006_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 12:01:35.969022 | timeMax: 2024-10-08 12:01:35.969587 | timeDiff: 5184000.00056481 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-09 10:01:35.969 | timeMax: 2024-10-08 10:01:35.97 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_017_autoQC03dda.raw NA p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_017_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/lkunz_20240930/20240930_002_autoQC03dda.raw p36445/Proteomics/EXPLORIS_2/analytic_20241001/20241001_C36445_007_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 12:08:39.072487 | timeMax: 2024-10-08 12:08:39.07305 | timeDiff: 5184000.00056338 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 720 using 'ggh4x' package ... Warning: Removed 35 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-08-09 10:08:39.072 | timeMax: 2024-10-08 10:08:39.073 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 720 using 'ggh4x' package ... Warning: Removed 35 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 12:27:10.788109 | timeMax: 2024-10-08 12:27:10.788674 | timeDiff: 5184000.00056505 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 12:27:14.415365 | timeMax: 2024-10-08 12:27:14.415924 | timeDiff: 5184000.00055861 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 10:27:10.788 | timeMax: 2024-10-08 10:27:10.789 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 624 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 10:27:14.41537 | timeMax: 2024-10-08 10:27:14.41592 | timeDiff: 5184000.00054979 nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 10:27:14.415 | timeMax: 2024-10-08 10:27:14.416 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_010_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_010_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_010_autoQC03dda.raw input timeRange: 7776000 | timeMin: 2024-09-29 10:27:17.269 | timeMax: 2024-10-08 10:27:14.416 | timeDiff: 777597.146999836 nFacets: 4 nrow dataFiltered(): 130 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-10-02 10:27:31.694 | timeMax: 2024-10-08 10:27:14.416 | timeDiff: 518382.721999884 nFacets: 4 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 10:27:10.788 | timeMax: 2024-09-16 10:28:07.327 | timeDiff: 3283256.5389998 nFacets: 4 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 13:41:56.01313 | timeMax: 2024-10-08 13:41:56.013705 | timeDiff: 5184000.0005753 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 736 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 11:41:56.013 | timeMax: 2024-10-08 11:41:56.014 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 13:42:25.407532 | timeMax: 2024-10-08 13:42:25.408119 | timeDiff: 5184000.00058699 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 624 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 11:42:25.40753 | timeMax: 2024-10-08 11:42:25.40812 | timeDiff: 5184000.00059009 nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 11:42:25.408 | timeMax: 2024-10-08 11:42:25.408 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-10-03 11:42:27.905 | timeMax: 2024-10-08 11:42:25.408 | timeDiff: 431997.503000021 nFacets: 4 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA input timeRange: 7776000 | timeMin: 2024-08-09 11:41:56.013 | timeMax: 2024-09-25 11:42:20.918 | timeDiff: 4060824.90499997 nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 13:48:54.129317 | timeMax: 2024-10-08 13:48:54.129919 | timeDiff: 5184000.00060201 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 11:48:54.129 | timeMax: 2024-10-08 11:48:54.13 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 15:19:40.47701 | timeMax: 2024-10-08 15:19:40.477787 | timeDiff: 5184000.00077701 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 13:19:40.47701 | timeMax: 2024-10-08 13:19:40.47779 | timeDiff: 5184000.00078011 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 13:19:40.477 | timeMax: 2024-10-08 13:19:40.478 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-10-04 13:19:42.107 | timeMax: 2024-10-08 13:19:40.478 | timeDiff: 345598.370999813 nFacets: 4 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_010_autoQC03dda_rep_20241008120446.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_010_autoQC03dda_rep_20241008120446.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 15:22:06.83397 | timeMax: 2024-10-08 15:22:06.835194 | timeDiff: 5184000.00122356 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 13:22:06.83397 | timeMax: 2024-10-08 13:22:06.83519 | timeDiff: 5184000.00121999 nFacets: 4 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 13:22:06.834 | timeMax: 2024-10-08 13:22:06.835 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-08-09 13:22:06.834 | timeMax: 2024-09-12 13:22:12.974 | timeDiff: 2937606.13999987 nFacets: 4 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_010_autoQC03dda_rep_20241008120446.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 16:05:53.668355 | timeMax: 2024-10-08 16:05:53.66997 | timeDiff: 5184000.00161529 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-09 14:05:53.66835 | timeMax: 2024-10-08 14:05:53.66997 | timeDiff: 5184000.00162005 nFacets: 1 nFacets: 1 input timeRange: 7776000 | timeMin: 2024-08-09 14:05:53.668 | timeMax: 2024-10-08 14:05:53.67 | timeDiff: 5184000.00200009 nFacets: 1 nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-02 14:05:55.448 | timeMax: 2024-10-08 14:05:53.67 | timeDiff: 518398.222000122 nFacets: 4 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 16:06:35.271039 | timeMax: 2024-10-08 16:06:35.271996 | timeDiff: 5184000.00095725 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-09 14:06:35.271 | timeMax: 2024-10-08 14:06:35.272 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 16:06:46.528065 | timeMax: 2024-10-08 16:06:46.529676 | timeDiff: 5184000.00161076 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-09 14:06:46.52807 | timeMax: 2024-10-08 14:06:46.52968 | timeDiff: 5184000.00161004 nFacets: 4 nFacets: 1 input timeRange: 7776000 | timeMin: 2024-08-09 14:06:46.528 | timeMax: 2024-10-08 14:06:46.53 | timeDiff: 5184000.00199986 nFacets: 4 nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-08-09 14:06:46.528 | timeMax: 2024-09-13 14:06:48.382 | timeDiff: 3024001.85399985 nFacets: 4 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-14 14:06:57.442 | timeMax: 2024-09-13 14:06:48.382 | timeDiff: 5270390.94000006 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-07-10 14:06:22.32438 | timeMax: 2024-10-08 14:05:53.67 | timeDiff: 7775971.34562016 nFacets: 4 nrow dataFiltered(): 884 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-10 17:08:07.632443 | timeMax: 2024-10-08 14:05:53.67 | timeDiff: 7772266.03755713 nFacets: 4 nrow dataFiltered(): 884 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 432 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-10 15:08:07.632 | timeMax: 2024-10-08 14:05:53.67 | timeDiff: 7772266.03800011 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 16:08:31.833688 | timeMax: 2024-10-08 16:08:31.835032 | timeDiff: 5184000.00134397 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 16:08:36.519959 | timeMax: 2024-10-08 16:08:36.520801 | timeDiff: 5184000.00084257 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 14:08:31.834 | timeMax: 2024-10-08 14:08:31.835 | timeDiff: 5184000.00099993 nFacets: 4 nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 14:08:36.51996 | timeMax: 2024-10-08 14:08:36.5208 | timeDiff: 5184000.00084019 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 14:08:36.52 | timeMax: 2024-10-08 14:08:36.521 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... NA NA input timeRange: 7776000 | timeMin: 2024-07-14 14:08:40.579 | timeMax: 2024-10-08 14:08:36.521 | timeDiff: 7430395.94199991 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 17:47:26.042233 | timeMax: 2024-10-08 17:47:26.043013 | timeDiff: 5184000.00077963 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 15:47:26.04223 | timeMax: 2024-10-08 15:47:26.04301 | timeDiff: 5184000.00078011 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 15:47:26.042 | timeMax: 2024-10-08 15:47:26.043 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 20:49:46.961043 | timeMax: 2024-10-08 20:49:46.962041 | timeDiff: 5184000.0009973 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-09 18:49:46.961 | timeMax: 2024-10-08 18:49:46.962 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1072 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240903_01_autoQC01_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_01_autoQC01_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_01_autoQC01_flex.raw vals$rawrr: TRUE p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240827_05_autoQC01_flex.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_01_autoQC01_flex.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_01_autoQC01_flex.raw plotClick: plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 20:57:38.822811 | timeMax: 2024-10-08 20:57:38.823383 | timeDiff: 5184000.0005722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 18:57:38.82281 | timeMax: 2024-10-08 18:57:38.82338 | timeDiff: 5184000.00056982 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 18:57:38.823 | timeMax: 2024-10-08 18:57:38.823 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-09 21:11:07.768039 | timeMax: 2024-10-08 21:11:07.769001 | timeDiff: 5184000.00096202 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 19:11:07.76804 | timeMax: 2024-10-08 19:11:07.769 | timeDiff: 5184000.00096011 nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-09 19:11:07.768 | timeMax: 2024-10-08 19:11:07.769 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 728 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//NA input timeRange: 7776000 | timeMin: 2024-09-29 19:11:11.394 | timeMax: 2024-10-08 19:11:07.769 | timeDiff: 777596.375 nFacets: 4 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 36 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 07:03:17.244441 | timeMax: 2024-10-09 07:03:17.245018 | timeDiff: 5184000.00057793 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 05:03:17.24444 | timeMax: 2024-10-09 05:03:17.24502 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-08-10 05:03:17.244 | timeMax: 2024-10-09 05:03:17.245 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 NA nrow dataFiltered(): 299 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 08:54:27.819276 | timeMax: 2024-10-09 08:54:27.819849 | timeDiff: 5184000.00057387 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 06:54:27.81928 | timeMax: 2024-10-09 06:54:27.81985 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 06:54:27.819 | timeMax: 2024-10-09 06:54:27.82 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA p36331/Proteomics/EXPLORIS_1/huanliu_20241002_TMT10plex_12frac/20241002_017_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 09:00:14.078517 | timeMax: 2024-10-09 09:00:14.07919 | timeDiff: 5184000.00067306 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-10 07:00:14.079 | timeMax: 2024-10-09 07:00:14.079 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 10:11:10.766383 | timeMax: 2024-10-09 10:11:10.76695 | timeDiff: 5184000.00056648 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 08:11:10.76638 | timeMax: 2024-10-09 08:11:10.76695 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 08:11:10.766 | timeMax: 2024-10-09 08:11:10.767 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... vals$rawrr: TRUE p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_012_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_012_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_012_autoQC01.raw Plotting chromatograms ... Read 22032 items NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist. Read 22032 items Warning: Error in hist.default: 'x' must be numeric 171: stop 170: hist.default 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw plotClick: plotClick: p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw plotClick: NA plotClick: p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_013_autoQC01.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 11:03:30.785609 | timeMax: 2024-10-09 11:03:30.786179 | timeDiff: 5184000.00056982 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 09:03:30.786 | timeMax: 2024-10-09 09:03:30.786 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 12:31:19.922517 | timeMax: 2024-10-09 12:31:19.923088 | timeDiff: 5184000.00057054 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 10:31:19.923 | timeMax: 2024-10-09 10:31:19.923 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_010_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 12:52:18.259824 | timeMax: 2024-10-09 12:52:18.260391 | timeDiff: 5184000.00056672 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 10:52:18.26 | timeMax: 2024-10-09 10:52:18.26 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... NA NA input timeRange: 31536000 | timeMin: 2024-08-10 10:52:18.26 | timeMax: 2024-10-09 12:53:00.343272 | timeDiff: 5184042.08327174 nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-08-10 10:52:18.26 | timeMax: 2024-10-09 10:53:00.343 | timeDiff: 5184042.08299994 nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-04-21 10:53:01.852 | timeMax: 2024-10-09 10:53:00.343 | timeDiff: 14774398.4909999 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-01-19 10:53:04.492 | timeMax: 2024-10-09 10:53:00.343 | timeDiff: 22809595.8509998 nFacets: 4 nrow dataFiltered(): 2938 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1206 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_06_autoQC03dda_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_03_autoQC03dda_flex_no_ETD.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_03_autoQC03dda_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_03_autoQC03dda_flex.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 12:58:31.858378 | timeMax: 2024-10-09 12:58:31.858962 | timeDiff: 5184000.00058365 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 10:58:31.858 | timeMax: 2024-10-09 10:58:31.859 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_02_autoQC03dia_flex.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 12:59:54.691114 | timeMax: 2024-10-09 12:59:54.691836 | timeDiff: 5184000.00072193 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 10:59:54.691 | timeMax: 2024-10-09 10:59:54.692 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... NA NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw NA plotClick: p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw NA nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240918_04_autoQC03dda_flex_new_RF_coil_box.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240918_04_autoQC03dda_flex_new_RF_coil_box.raw NA nrow dataFiltered(): 338 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_06_autoQC03dda_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_06_autoQC03dda_flex.raw NA nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_06_autoQC03dda_flex.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 13:44:18.818597 | timeMax: 2024-10-09 13:44:18.819159 | timeDiff: 5184000.00056171 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 11:44:18.819 | timeMax: 2024-10-09 11:44:18.819 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_02_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_02_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_02_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_02_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw plotClick: NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_02_autoQC03dia_flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_02_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_02_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_02_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_02_autoQC03dia_flex_no_ETD.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_02_autoQC03dia_flex_no_ETD.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_02_autoQC03dia_flex_no_ETD.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_02_autoQC03dia_flex_no_ETD.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 14:19:07.22541 | timeMax: 2024-10-09 14:19:07.225976 | timeDiff: 5184000.00056672 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 752 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 12:19:07.225 | timeMax: 2024-10-09 12:19:07.226 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_04_autoQC03dda_flex_new_Quad.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_04_autoQC03dda_flex_new_Quad.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_04_autoQC03dda_flex_new_Quad.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_04_autoQC03dda_flex_new_Quad.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_04_autoQC03dda_flex_new_Quad.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240917_07_autoQC03dda_flex.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 14:21:22.429375 | timeMax: 2024-10-09 14:21:22.429956 | timeDiff: 5184000.00058126 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 12:21:22.429 | timeMax: 2024-10-09 12:21:22.43 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-09-26 12:21:26.253 | timeMax: 2024-10-09 12:21:22.43 | timeDiff: 1123196.17700005 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_014_autoQC03dda.raw p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_06_autoQC03dda_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_04_autoQC03dda_flex_new_Quad.raw input timeRange: 7776000 | timeMin: 2024-08-10 12:19:07.225 | timeMax: 2024-10-03 12:19:49.042 | timeDiff: 4665641.81700015 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-30 12:21:49.306 | timeMax: 2024-10-09 12:21:22.43 | timeDiff: 777573.124000072 nFacets: 4 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-02 12:22:26.916 | timeMax: 2024-10-09 12:21:22.43 | timeDiff: 604735.514000177 nFacets: 4 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_014_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_04_autoQC03dda_flex_new_Quad.raw NA NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_014_autoQC03dda.raw NA nrow dataFiltered(): 260 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-08-10 12:19:07.225 | timeMax: 2024-09-30 12:22:12.905 | timeDiff: 4406585.68000007 nFacets: 4 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... p3127/Proteomics/LUMOS_1/justindwalter_20210412/20210412_028_autoQC4L.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_010_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_007_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_010_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_010_autoQC03dda_rep_20241008120446.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_014_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_015_autoQC03dda.raw NA input timeRange: 7776000 | timeMin: 2024-08-10 12:19:07.225 | timeMax: 2024-10-09 12:27:08.46822 | timeDiff: 5184481.24322009 nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-10 12:19:07.225 | timeMax: 2024-10-09 12:27:08.468 | timeDiff: 5184481.24300003 nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-11 12:36:27.449 | timeMax: 2024-10-09 12:27:08.468 | timeDiff: 2418641.01900005 nFacets: 4 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-17 12:36:30.513 | timeMax: 2024-10-09 12:27:08.468 | timeDiff: 1900237.95499992 nFacets: 4 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-02 15:25:26.930539 | timeMax: 2024-10-09 15:25:26.930586 | timeDiff: 604800.000046492 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-02 15:25:30.307734 | timeMax: 2024-10-09 15:25:30.307756 | timeDiff: 604800.000021935 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-02 15:25:33.855463 | timeMax: 2024-10-09 15:25:33.855506 | timeDiff: 604800.000042915 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-10 15:37:14.465277 | timeMax: 2024-10-09 15:37:14.465847 | timeDiff: 5184000.00056958 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-08-10 13:37:14.465 | timeMax: 2024-10-09 13:37:14.466 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241009_023_autoQC01.raw NA p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241009_023_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241009_023_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 09:05:54.393867 | timeMax: 2024-10-10 09:05:54.39443 | timeDiff: 5184000.00056362 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 07:05:54.394 | timeMax: 2024-10-10 07:05:54.394 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_06_autoQC03dda_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_06_autoQC03dda_flex.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-03 09:21:34.596178 | timeMax: 2024-10-10 09:21:34.596226 | timeDiff: 604800.000047684 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-03 09:21:37.918144 | timeMax: 2024-10-10 09:21:37.918167 | timeDiff: 604800.000022411 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 09:22:45.638756 | timeMax: 2024-10-10 09:22:45.639332 | timeDiff: 5184000.0005765 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 07:22:45.639 | timeMax: 2024-10-10 07:22:45.639 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-03 09:22:55.134704 | timeMax: 2024-10-10 09:22:55.134741 | timeDiff: 604800.00003624 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nrow dataFiltered(): 338 using 'ggh4x' package ... Warning: Failed to fit group -1. Caused by error in `smooth.construct.cr.smooth.spec()`: ! x has insufficient unique values to support 10 knots: reduce k. Warning: Failed to fit group -1. Caused by error in `smooth.construct.cr.smooth.spec()`: ! x has insufficient unique values to support 10 knots: reduce k. Warning: Failed to fit group -1. Caused by error in `smooth.construct.cr.smooth.spec()`: ! x has insufficient unique values to support 10 knots: reduce k. Warning: Failed to fit group -1. Caused by error in `smooth.construct.cr.smooth.spec()`: ! x has insufficient unique values to support 10 knots: reduce k. nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_06_autoQC03dda_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_04_autoQC03dda_flex_new_Quad.raw NA nrow dataFiltered(): 338 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-15 07:05:56.088 | timeMax: 2024-10-10 07:05:54.394 | timeDiff: 7516798.30599999 nFacets: 4 nrow dataFiltered(): 494 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 594 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-15 07:05:56.088 | timeMax: 2024-10-04 07:24:47.83 | timeDiff: 6999531.74199986 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-15 07:05:56.088 | timeMax: 2024-10-02 07:24:51 | timeDiff: 6826734.91199994 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 09:26:12.578068 | timeMax: 2024-10-10 09:26:12.579301 | timeDiff: 5184000.0012331 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 nrow dataFiltered(): 1088 using 'ggh4x' package ... NA nrow dataFiltered(): 1088 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 09:32:03.223316 | timeMax: 2024-10-10 09:32:03.224192 | timeDiff: 5184000.00087571 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 07:32:03.22332 | timeMax: 2024-10-10 07:32:03.22419 | timeDiff: 5184000.00086999 nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 07:32:03.223 | timeMax: 2024-10-10 07:32:03.224 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 752 using 'ggh4x' package ... nrow dataFiltered(): 752 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-10-05 07:32:06.705 | timeMax: 2024-10-10 07:32:03.224 | timeDiff: 431996.519000053 nFacets: 2 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-15 07:34:16.253 | timeMax: 2024-10-10 07:32:03.224 | timeDiff: 2159866.97099996 nFacets: 4 nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nFacets: 1 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 09:38:46.021725 | timeMax: 2024-10-10 09:38:46.022776 | timeDiff: 5184000.00105119 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 07:38:46.022 | timeMax: 2024-10-10 07:38:46.023 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... NA nrow dataFiltered(): 1296 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_009_autoQC01.raw NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 09:59:04.777639 | timeMax: 2024-10-10 09:59:04.778695 | timeDiff: 5184000.00105596 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 07:59:04.778 | timeMax: 2024-10-10 07:59:04.779 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... NA p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_021_autoQC03dda_old.raw plotClick: fn has changed to /srv/www/htdocs//NA NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_021_autoQC03dda_old.raw NA nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_06_autoQC03dda_flex.raw NA nFacets: 4 nrow dataFiltered(): 832 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_021_autoQC03dda_new.raw p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_021_autoQC03dda_new.raw plotClick: NA plotClick: p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_021_autoQC03dda_new.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 10:34:20.158793 | timeMax: 2024-10-10 10:34:20.159384 | timeDiff: 5184000.00059128 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-08-11 08:34:20.159 | timeMax: 2024-10-10 08:34:20.159 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 416 using 'ggh4x' package ... NA p36398/Proteomics/FUSION_2/chryssazog_20240927/20240927_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36398/Proteomics/FUSION_2/chryssazog_20240927/20240927_007_autoQC03dda.raw NA NA plotClick: fn has changed to /srv/www/htdocs//p36376/Proteomics/FUSION_2/analytic_20241007/20241007_C36376_007_autoQC03dia.raw p36376/Proteomics/FUSION_2/analytic_20241007/20241007_C36376_007_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 14:28:00.17355 | timeMax: 2024-10-10 14:28:00.175184 | timeDiff: 5184000.00163436 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 12:28:00.17355 | timeMax: 2024-10-10 12:28:00.17518 | timeDiff: 5184000.00162983 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 12:28:00.174 | timeMax: 2024-10-10 12:28:00.175 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1200 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/EXPLORIS_1/lkunz_20241007/20241007_004_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 14:46:36.490262 | timeMax: 2024-10-10 14:46:36.49135 | timeDiff: 5184000.0010879 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-11 12:46:36.49 | timeMax: 2024-10-10 12:46:36.491 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241010_08_autoQC03dda_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241010_08_autoQC03dda_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241010_08_autoQC03dda_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241010_08_autoQC03dda_flex.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-03 14:48:44.057577 | timeMax: 2024-10-10 14:48:44.057681 | timeDiff: 604800.000103474 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 16:00:10.181309 | timeMax: 2024-10-10 16:00:10.182192 | timeDiff: 5184000.00088334 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 14:00:10.18131 | timeMax: 2024-10-10 14:00:10.18219 | timeDiff: 5184000.00087976 nFacets: 4 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-11 14:00:10.181 | timeMax: 2024-10-10 14:00:10.182 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241010_08_autoQC03dda_flex.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-11 16:16:48.587932 | timeMax: 2024-10-10 16:16:48.589267 | timeDiff: 5184000.00133467 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-11 14:16:48.588 | timeMax: 2024-10-10 14:16:48.589 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241010_09_autoQC03dda_from_scratch.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241010_09_autoQC03dda_from_scratch.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241010_09_autoQC03dda_from_scratch.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241010_09_autoQC03dda_from_scratch.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-12 07:19:51.298352 | timeMax: 2024-10-11 07:19:51.29892 | timeDiff: 5184000.00056791 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1200 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-12 05:19:51.298 | timeMax: 2024-10-11 05:19:51.299 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-12 09:11:46.117368 | timeMax: 2024-10-11 09:11:46.117937 | timeDiff: 5184000.00056911 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-12 07:11:46.117 | timeMax: 2024-10-11 07:11:46.118 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_001_autoQC01.raw vals$rawrr: TRUE nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... NA p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_020_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 858 using 'ggh4x' package ... vals$rawrr: TRUE NA p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_021_autoQC03dda_old.raw plotClick: fn has changed to /srv/www/htdocs//p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_021_autoQC03dda_old.raw Reading raw file: /srv/www/htdocs//p3127/Proteomics/LUMOS_2/mesche_20241008/20241008_021_autoQC03dda_old.raw Plotting chromatograms ... Read 22032 items plotClick: Execution halted There were 21 warnings (use warnings() to see them)