Listening on http://127.0.0.1:45675

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-14 16:16:03.885368 | timeMax: 2024-10-13 16:16:03.885956 | timeDiff: 5184000.00058842
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 182
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 288
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 288
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
nrow dataFiltered(): 182
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-14 14:16:03.88537 | timeMax: 2024-10-13 14:16:03.88596 | timeDiff: 5184000.00058985
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-14 14:16:03.885 | timeMax: 2024-10-13 14:16:03.886 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 988
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 306
using 'ggh4x' package ...
NA
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_003_autoQC03dda_old.raw
NA
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_003_autoQC03dda_old.raw
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_005_autoQC03dda_old.raw
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_004_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_004_autoQC03dda.raw
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_002_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_003_autoQC03dda_old.raw
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_003_autoQC03dda_old.raw
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_002_autoQC03dda.raw
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_004_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_002_autoQC03dda.raw
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-14 16:17:57.003422 | timeMax: 2024-10-13 16:17:57.004009 | timeDiff: 5184000.00058699
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 182
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 288
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 288
using 'ggh4x' package ...
nrow dataFiltered(): 182
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-14 14:17:57.00342 | timeMax: 2024-10-13 14:17:57.00401 | timeDiff: 5184000.00059009
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-14 14:17:57.003 | timeMax: 2024-10-13 14:17:57.004 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 442
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 432
using 'ggh4x' package ...
NA
p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240930_04_autoQC03dda_flex_new_Quad.raw
NA
input timeRange: 7776000 | timeMin: 2024-10-02 14:16:06.206 | timeMax: 2024-10-13 14:16:03.886 | timeDiff: 950397.679999828
nFacets: 4
nrow dataFiltered(): 520
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 72
using 'ggh4x' package ...
NA


Execution halted