Listening on http://127.0.0.1:40535

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 09:49:25.04841 | timeMax: 2024-10-14 09:49:25.049005 | timeDiff: 5184000.00059485
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 182
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 288
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 288
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
nrow dataFiltered(): 182
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 07:49:25.04841 | timeMax: 2024-10-14 07:49:25.049 | timeDiff: 5184000.00059009
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 07:49:25.048 | timeMax: 2024-10-14 07:49:25.049 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_2/lkunz_20240902/20240902_002_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20240902/20240902_002_autoQC03dda.raw
p36084/Proteomics/EXPLORIS_2/analytic_20240910/20240910_C36084_015_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20240916/20240916_002_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_2/lkunz_20241007/20241007_002_autoQC03dda.raw
nFacets: 4
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 216
using 'ggh4x' package ...
plotClick: 
fn has changed to /srv/www/htdocs//p36130/Proteomics/FUSION_2/aeberle_20240821/20240821_023_autoQC03dda.raw
p36130/Proteomics/FUSION_2/aeberle_20240821/20240821_023_autoQC03dda.raw
p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_015_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p26109/Proteomics/FUSION_2/jascot_20240829_DDA_runs/20240829_015_autoQC03dda.raw
p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_005_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_005_autoQC03dda.raw
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 10:38:11.235991 | timeMax: 2024-10-14 10:38:11.236578 | timeDiff: 5184000.00058699
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 273
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 198
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 198
using 'ggh4x' package ...
nrow dataFiltered(): 273
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 08:38:11.23599 | timeMax: 2024-10-14 08:38:11.23658 | timeDiff: 5184000.00059009
nFacets: 1
nrow dataFiltered(): 273
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 198
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 08:38:11.236 | timeMax: 2024-10-14 08:38:11.237 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 273
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 198
using 'ggh4x' package ...
p3000/Proteomics/EXPLORIS_1/lkunz_20241007/20241007_002_autoQC03dda.raw
p36566/Proteomics/EXPLORIS_1/analytic_20241011/20241011_C36566_017_autoQC03dia.raw
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 12:21:58.395573 | timeMax: 2024-10-14 12:21:58.39616 | timeDiff: 5184000.00058675
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1184
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 10:21:58.396 | timeMax: 2024-10-14 10:21:58.396 | timeDiff: 5184000
nrow dataFiltered(): 1184
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 1328
using 'ggh4x' package ...
nFacets: 4
NA
p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_012_autoQC01.raw
NA
Warning: Error in *: non-numeric argument to binary operator
  175: readFUN
  174: <reactive>
  158: data
  151: <reactive>
  135: dataFiltered
  131: <reactive>
  115: nFacets
   97: renderUI
   96: func
   83: renderFunc
   82: output$autoQC03-DDA-ui
    1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 306
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 306
using 'ggh4x' package ...
vals$rawrr: TRUE
NA
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_008_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_008_autoQC03dia.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_008_autoQC03dia.raw
Plotting chromatograms ...
Read 22032 items
Plotting chromatograms ...
NA
p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw
p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw
p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw
NA
p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_008_autoQC03dia.raw
NA
p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw
NA
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_007_autoQC03dia.raw
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_008_autoQC03dia.raw
NA
p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_011_autoQC03dia.raw
NA
p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw
Read 22032 items
Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw
Plotting chromatograms ...
NA
Plotting chromatograms ...
Plotting chromatograms ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 13:10:53.813862 | timeMax: 2024-10-14 13:10:53.814474 | timeDiff: 5184000.00061202
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning: Error in *: non-numeric argument to binary operator
  120: readFUN
  119: <reactive>
  103: autoQC03DDA
   97: renderTable [/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/server.R#481]
   96: func
   83: renderFunc
   82: output$lastEntryAutoQC03dda
    1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
input timeRange: 7776000 | timeMin: 2024-08-15 11:10:53.81386 | timeMax: 2024-10-14 11:10:53.81447 | timeDiff: 5184000.00060987
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
autoQC01 module APEX wide nrow: 280841
autoQC01 module APEX long nrow: 0
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
autoQC01 module APEX long nrow: 888
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 2 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Error in *: non-numeric argument to binary operator
  160: <Anonymous>
  159: stop
  158: data
  151: <reactive>
  135: dataFiltered
  131: <reactive>
  115: nFacets
   97: renderUI
   96: func
   83: renderFunc
   82: output$autoQC03-DDA-ui
    1: runApp
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 288
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 288
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 11:10:53.814 | timeMax: 2024-10-14 11:10:53.814 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 288
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 13:13:06.827769 | timeMax: 2024-10-14 13:13:06.828365 | timeDiff: 5184000.00059605
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1184
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 11:13:06.828 | timeMax: 2024-10-14 11:13:06.828 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Error in *: non-numeric argument to binary operator
  120: readFUN
  119: <reactive>
  103: autoQC03DDA
   97: renderTable [/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/server.R#481]
   96: func
   83: renderFunc
   82: output$lastEntryAutoQC03dda
    1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-15 13:14:19.029984 | timeMax: 2024-10-14 13:14:19.030626 | timeDiff: 5184000.00064135
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1184
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-15 11:14:19.03 | timeMax: 2024-10-14 11:14:19.031 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Error in /: non-numeric argument to binary operator
  175: readFUN
  174: <reactive>
  158: data
  151: <reactive>
  135: dataFiltered
  131: <reactive>
  115: nFacets
   97: renderUI
   96: func
   83: renderFunc
   82: output$autoQC03-DDA-ui
    1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 288
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 288
using 'ggh4x' package ...
Warning: Error in /: non-numeric argument to binary operator
  105: <Anonymous>
  104: stop
  103: autoQC03DDA
   97: renderTable [/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/server.R#481]
   96: func
   83: renderFunc
   82: output$lastEntryAutoQC03dda
    1: runApp
Warning: Error in basename: a character vector argument expected
  63: basename
  62: use_tracking
   1: runApp
Warning: Error in basename: a character vector argument expected
  63: basename
  62: use_tracking
   1: runApp