Listening on http://127.0.0.1:37855

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-08-22 08:23:15.108813 | timeMax: 2024-10-21 08:23:15.109401 | timeDiff: 5184000.00058866
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1248
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1248
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

    guide_axis_logticks

using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-08-22 06:23:15.109 | timeMax: 2024-10-21 06:23:15.109 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1248
using 'ggh4x' package ...
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_003_autoQC01.raw
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_001_autoQC01.raw
NA
p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_001_autoQC01.raw
p25334/Proteomics/LUMOS_2/dlesli_20241017_SuSu155/20241017_031_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p25334/Proteomics/LUMOS_2/dlesli_20241017_SuSu155/20241017_031_autoQC01.raw
NA
p25334/Proteomics/LUMOS_2/dlesli_20241017_SuSu155/20241017_020_autoQC01.raw
p25334/Proteomics/LUMOS_2/dlesli_20241017_SuSu155/20241017_031_autoQC01.raw
p25334/Proteomics/LUMOS_2/dlesli_20241017_SuSu155/20241017_031_autoQC01.raw
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 962
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 270
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 270
using 'ggh4x' package ...
nrow dataFiltered(): 962
using 'ggh4x' package ...
NA
NA
nFacets: 0
nrow dataFiltered(): 0
nFacets: 1
nrow dataFiltered(): 774
using 'ggh4x' package ...
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 4
nrow dataFiltered(): 0
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241017/zip/20241017_104_autoQC03dia_02.d.zip
plotClick: 
fn has changed to /srv/www/htdocs//p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241017/zip/20241017_104_autoQC03dia_02.d.zip
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241017/zip/20241017_104_autoQC03dia_02.d.zip
plotClick: 
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
NA
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241017/zip/20241017_104_autoQC03dia_02.d.zip
plotClick: 
plotClick: 
fn has changed to /srv/www/htdocs//p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241017/zip/20241017_053_autoQC03dia_01.d.zip
p35118/Proteomics/TIMSTOFFLEX_1/cfortes_20241017/zip/20241017_053_autoQC03dia_01.d.zip
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729491790814650000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted
Warning messages:
1: agg could not write to the given file 
2: agg could not write to the given file 
3: agg could not write to the given file