Listening on http://127.0.0.1:46579 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-23 14:06:59.966643 | timeMax: 2024-10-22 14:06:59.967235 | timeDiff: 5184000.00059199 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1248 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-23 12:06:59.967 | timeMax: 2024-10-22 12:06:59.967 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_001_autoQC01.raw NA p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_001_autoQC01.raw p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_002_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-23 17:24:06.157532 | timeMax: 2024-10-22 17:24:06.158121 | timeDiff: 5184000.00058961 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-23 15:24:06.158 | timeMax: 2024-10-22 15:24:06.158 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_002_autoQC01_20241022145213.raw NA p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_002_autoQC01_20241022145213.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_002_autoQC01_20241022145213.raw Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 936 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 270 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 936 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_004_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_004_autoQC03dda.raw p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_004_autoQC03dda.raw plotClick: NA p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_004_autoQC03dda.raw plotClick: plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_005_autoQC03dia.raw p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_005_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_005_autoQC03dia.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-23 17:26:24.605086 | timeMax: 2024-10-22 17:26:24.605681 | timeDiff: 5184000.00059533 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729610781152483000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-23 17:27:02.979681 | timeMax: 2024-10-22 17:27:02.980281 | timeDiff: 5184000.0006001 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-23 15:27:02.98 | timeMax: 2024-10-22 15:27:02.98 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 281490 autoQC01 module APEX long nrow: 0 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 autoQC01 module APEX long nrow: 948 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). NA p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_002_autoQC01_20241022145213.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_002_autoQC01_20241022145213.raw plotClick: NA p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_002_autoQC01_20241022145213.raw plotClick: NA p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_002_autoQC01_20241022145213.raw plotClick: NA p25334/Proteomics/LUMOS_2/dlesli_20241017_SuSu155/20241017_031_autoQC01.raw NA nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 988 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 270 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_003_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//NA NA p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_003_autoQC03dda.raw p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_003_autoQC03dda.raw p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_003_autoQC03dda.raw p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_003_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_005_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//NA NA p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241016_005_autoQC03dia.raw nrow dataFiltered(): 988 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_003_autoQC03dda.raw p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_003_autoQC03dda.raw NA nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... nrow dataFiltered(): 270 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729610819230127000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-24 09:07:50.264499 | timeMax: 2024-10-23 09:07:50.265078 | timeDiff: 5184000.00057864 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-24 07:07:50.265 | timeMax: 2024-10-23 07:07:50.265 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 880 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 9 rows containing missing values or values outside the scale range (`geom_line()`). p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_004r_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_004r_autoQC01.raw NA plotClick: p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_004r_autoQC01.raw plotClick: Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729667266834907000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729610642483997000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-24 14:49:36.06663 | timeMax: 2024-10-23 14:49:36.06722 | timeDiff: 5184000.00059032 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-24 12:49:36.067 | timeMax: 2024-10-23 12:49:36.067 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 896 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_002_autoQC01.raw p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_002_autoQC01.raw NA plotClick: p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_002_autoQC01.raw NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 260 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 252 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA NA p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_003_autoQC03dda.raw NA plotClick: plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_004_autoQC03dia.raw NA NA p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_002_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241023_003_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-24 16:42:39.924192 | timeMax: 2024-10-23 16:42:39.925199 | timeDiff: 5184000.00100613 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-08-24 14:42:39.924 | timeMax: 2024-10-23 14:42:39.925 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 928 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 3 rows containing missing values or values outside the scale range (`geom_line()`). p3000/Proteomics/EXPLORIS_1/cfortes_20241023/20241023_006_autoQC01.raw p3000/Proteomics/EXPLORIS_1/cfortes_20241023/20241023_006_autoQC01.raw p3000/Proteomics/EXPLORIS_1/cfortes_20241023/20241023_006_autoQC01.raw p3000/Proteomics/EXPLORIS_1/cfortes_20241023/20241023_006_autoQC01.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729687772583767000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 988 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 288 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729694553091154000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-25 12:52:44.656833 | timeMax: 2024-10-24 12:52:44.657409 | timeDiff: 5184000.00057626 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-25 10:52:44.657 | timeMax: 2024-10-24 10:52:44.657 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). p36566/Proteomics/EXPLORIS_1/analytic_20241011/20241011_C36566_016_autoQC01.raw p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_001_autoQC01.raw p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_002_autoQC01.raw p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_002_autoQC01.raw p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_002_autoQC01.raw p36671/Proteomics/EXPLORIS_1/analytic_20241023/20241023_C36671_001_autoQC01.raw NA p30240/Proteomics/EXPLORIS_1/gomal_20231030/20231030_001_autoQC01_20231030154745.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-25 14:19:35.540214 | timeMax: 2024-10-24 14:19:35.540785 | timeDiff: 5184000.00057101 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 992 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-08-25 12:19:35.54 | timeMax: 2024-10-24 12:19:35.541 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_003_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_002_autoQC01.raw Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 273 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 270 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729767161206192000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_004_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_004_autoQC03dda.raw plotClick: plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-25 17:23:01.609188 | timeMax: 2024-10-24 17:23:01.609766 | timeDiff: 5184000.00057864 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1024 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-08-25 15:23:01.609 | timeMax: 2024-10-24 15:23:01.61 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 273 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 288 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729772372139233000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/cfortes_20241023/20241023_006_autoQC01.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729783378150488000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-26 12:19:10.222351 | timeMax: 2024-10-25 12:19:10.222923 | timeDiff: 5184000.00057149 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-26 10:19:10.222 | timeMax: 2024-10-25 10:19:10.223 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_002_autoQC01_20241022145213.raw NA p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_002_autoQC01_20241022145213.raw input timeRange: 7776000 | timeMin: 2024-08-26 10:19:10.222 | timeMax: 2024-10-25 10:19:11.46049 | timeDiff: 5184001.2384901 nFacets: 4 nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 988 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 306 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-26 10:19:10.222 | timeMax: 2024-10-25 10:19:11.46 | timeDiff: 5184001.23800015 nFacets: 4 nrow dataFiltered(): 988 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... NA p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_001_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729851546767029000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-26 15:12:55.407418 | timeMax: 2024-10-25 15:12:55.408004 | timeDiff: 5184000.00058603 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1280 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-26 13:12:55.407 | timeMax: 2024-10-25 13:12:55.408 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 1024 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_007_autoQC01.raw NA p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_007_autoQC01.raw NA p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_007_autoQC01.raw plotClick: NA p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_007_autoQC01.raw NA p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_007_autoQC01.raw NA p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_007_autoQC01.raw plotClick: NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 273 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 306 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 273 using 'ggh4x' package ... p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_008_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_008_autoQC03dia.raw NA plotClick: p36620/Proteomics/EXPLORIS_1/analytic_20241024/20241024_C36620_008_autoQC03dia.raw NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729861971978594000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-29 11:05:13.327546 | timeMax: 2024-10-28 10:05:13.32812 | timeDiff: 5184000.00057411 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1152 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1152 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-29 09:05:13.328 | timeMax: 2024-10-28 09:05:13.328 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1729598815644784000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 312 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 198 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-29 13:05:58.033614 | timeMax: 2024-10-28 12:05:58.034209 | timeDiff: 5184000.00059509 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-29 11:05:58.034 | timeMax: 2024-10-28 11:05:58.034 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_010_autoQC01.raw NA p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_010_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_010_autoQC01.raw NA p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_010_autoQC01.raw plotClick: NA p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_010_autoQC01.raw NA p36163/Proteomics/LUMOS_2/pgehrig_20240903/20240903_008_autoQC01.raw Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 962 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 288 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 962 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dda.raw p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dda.raw NA p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dda.raw plotClick: NA nrow dataFiltered(): 962 using 'ggh4x' package ... p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dda.raw p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/pgehrig_20241022_autoQC/20241022_003_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241008_014_autoQC03dda.raw NA p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-29 17:10:53.812574 | timeMax: 2024-10-28 16:10:53.813157 | timeDiff: 5184000.00058341 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 752 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 752 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 22 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-08-29 15:10:53.813 | timeMax: 2024-10-28 15:10:53.813 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 752 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 22 rows containing missing values or values outside the scale range (`geom_line()`). NA plotClick: fn has changed to /srv/www/htdocs//p36412/Proteomics/QEXACTIVE_1/analytic_20241028/20241028_C36412_002_autoQC01.raw p36412/Proteomics/QEXACTIVE_1/analytic_20241028/20241028_C36412_002_autoQC01.raw NA p36412/Proteomics/QEXACTIVE_1/analytic_20241028/20241028_C36412_002_autoQC01.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730128250351467000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-29 18:11:10.371594 | timeMax: 2024-10-28 17:11:10.372182 | timeDiff: 5184000.00058722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1088 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-29 16:11:10.372 | timeMax: 2024-10-28 16:11:10.372 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1088 using 'ggh4x' package ... NA p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_079_autoQC01.raw NA p36528/Proteomics/EXPLORIS_2/analytic_20241022/20241022_C36528_079_autoQC01.raw NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 156 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 324 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/spfammatter_20241021/20241021_002_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/spfammatter_20241021/20241021_002_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/lkunz_20241014/20241014_002_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/lkunz_20241014/20241014_002_autoQC03dda.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730131866819413000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 12:17:31.711705 | timeMax: 2024-10-29 11:17:31.712277 | timeDiff: 5184000.00057149 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 156 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 10:17:31.71171 | timeMax: 2024-10-29 10:17:31.71228 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 10:17:31.712 | timeMax: 2024-10-29 10:17:31.712 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20241007_02_autoQC03dia_flex_no_ETD.raw p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_02_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241011_03_autoQC03dia_flex.raw NA nrow dataFiltered(): 306 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241011_03_autoQC03dia_flex.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 12:18:47.769325 | timeMax: 2024-10-29 11:18:47.769901 | timeDiff: 5184000.00057554 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 962 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 288 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 962 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 10:18:47.76933 | timeMax: 2024-10-29 10:18:47.7699 | timeDiff: 5184000.00056982 nFacets: 4 nrow dataFiltered(): 962 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 10:18:47.769 | timeMax: 2024-10-29 10:18:47.77 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 962 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 288 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240819/20241007_011_autoQC03dia.raw input timeRange: 15552000 | timeMin: 2024-08-30 10:18:47.769 | timeMax: 2024-10-29 11:19:16.667057 | timeDiff: 5184028.89805722 nFacets: 4 nrow dataFiltered(): 962 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-08-30 10:18:47.769 | timeMax: 2024-10-29 10:19:16.667 | timeDiff: 5184028.898 nFacets: 4 nrow dataFiltered(): 962 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-06-02 10:19:18.191 | timeMax: 2024-10-29 10:19:16.667 | timeDiff: 12873598.4760001 nFacets: 4 nrow dataFiltered(): 1755 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 864 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/analytics_20240819/20240819_003_autoQC03dia.raw nrow dataFiltered(): 864 using 'ggh4x' package ... NA NA NA input timeRange: 15552000 | timeMin: 2024-08-30 10:17:31.712 | timeMax: 2024-10-29 11:19:54.477315 | timeDiff: 5184142.76531553 nFacets: 4 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-08-30 10:17:31.712 | timeMax: 2024-10-29 10:19:54.477 | timeDiff: 5184142.7650001 nFacets: 4 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-08-30 10:19:56.145 | timeMax: 2024-10-29 10:19:54.477 | timeDiff: 5183998.33200002 nFacets: 4 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-23 10:19:58.211 | timeMax: 2024-10-29 10:19:54.477 | timeDiff: 13737596.266 nFacets: 4 nrow dataFiltered(): 1222 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 900 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw NA nrow dataFiltered(): 900 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240912_02_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240611_31_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240605_24_autoQC03dia.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241008_05_autoQC03dia_flex.raw input timeRange: 63072000 | timeMin: 2024-05-23 10:19:58.211 | timeMax: 2024-10-29 11:22:48.167031 | timeDiff: 13737769.9560313 nFacets: 4 nrow dataFiltered(): 1222 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 900 using 'ggh4x' package ... nrow dataFiltered(): 900 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2024-05-23 10:19:58.211 | timeMax: 2024-10-29 10:22:48.167 | timeDiff: 13737769.9560001 nFacets: 4 nrow dataFiltered(): 1222 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 900 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2023-01-12 10:22:49.845 | timeMax: 2024-10-29 10:22:48.167 | timeDiff: 56678398.322 nFacets: 5 nrow dataFiltered(): 10205 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20231005_autoQC/20231023_15_autoQC4L.raw p3000/Proteomics/LUMOS_1/roschi_20230821_autoQCs/20230828_013_autoQC4L.raw p32990/Proteomics/LUMOS_1/analytic_20231013/20231013_C32990_008_autoQC4L.raw NA NA input timeRange: 63072000 | timeMin: 2024-06-02 10:19:18.191 | timeMax: 2024-10-29 11:23:46.323741 | timeDiff: 12873868.132741 nFacets: 4 nrow dataFiltered(): 1755 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 864 using 'ggh4x' package ... nrow dataFiltered(): 864 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2024-06-02 10:19:18.191 | timeMax: 2024-10-29 10:23:46.324 | timeDiff: 12873868.1329999 nFacets: 4 nrow dataFiltered(): 1755 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 864 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2024-06-02 10:23:47.882 | timeMax: 2024-10-29 10:23:46.324 | timeDiff: 12873598.4419999 nFacets: 4 nrow dataFiltered(): 1755 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 864 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2023-06-02 10:23:49.939 | timeMax: 2024-10-29 10:23:46.324 | timeDiff: 44495996.385 nFacets: 5 nrow dataFiltered(): 5057 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1710 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 12:24:31.521142 | timeMax: 2024-10-29 11:24:31.521835 | timeDiff: 5184000.00069308 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 312 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 216 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 10:24:31.52114 | timeMax: 2024-10-29 10:24:31.52184 | timeDiff: 5184000.00070024 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 10:24:31.521 | timeMax: 2024-10-29 10:24:31.522 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-08-30 10:24:31.521 | timeMax: 2024-10-29 11:24:50.735963 | timeDiff: 5184019.21496296 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-08-30 10:24:31.521 | timeMax: 2024-10-29 10:24:50.736 | timeDiff: 5184019.21500015 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-02-04 10:24:52.22 | timeMax: 2024-10-29 10:24:50.736 | timeDiff: 23155198.516 nFacets: 4 nrow dataFiltered(): 3016 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 756 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-12-19 10:24:55.134 | timeMax: 2024-10-29 10:24:50.736 | timeDiff: 27215995.602 nFacets: 4 nrow dataFiltered(): 3796 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1008 using 'ggh4x' package ... nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730197468040444000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730197048271189000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730197124317068000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 12:27:21.51416 | timeMax: 2024-10-29 11:27:21.514908 | timeDiff: 5184000.00074792 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 390 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 306 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 10:27:21.51416 | timeMax: 2024-10-29 10:27:21.51491 | timeDiff: 5184000.00075006 nFacets: 4 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 10:27:21.514 | timeMax: 2024-10-29 10:27:21.515 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730197638062329000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p36647/Proteomics/TIMSTOF_1/mtuchel_20241024_/zip/20241024_012_autoQC03dia_S1-A12_1_10694.d.zip p36647/Proteomics/TIMSTOF_1/mtuchel_20241024_/zip/20241024_012_autoQC03dia_S1-A12_1_10694.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 15:53:15.036537 | timeMax: 2024-10-29 14:53:15.037107 | timeDiff: 5184000.00056982 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 464 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 13:53:15.037 | timeMax: 2024-10-29 13:53:15.037 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 464 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 464 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 15:53:24.937989 | timeMax: 2024-10-29 14:53:24.938564 | timeDiff: 5184000.00057507 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 13:53:24.938 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 15:53:35.504533 | timeMax: 2024-10-29 14:53:35.505122 | timeDiff: 5184000.00058889 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-30 13:53:35.505 | timeMax: 2024-10-29 13:53:35.505 | timeDiff: 5184000 nFacets: 4 Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730210012069903000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 15:54:06.042587 | timeMax: 2024-10-29 14:54:06.043166 | timeDiff: 5184000.00057912 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-30 13:54:06.043 | timeMax: 2024-10-29 13:54:06.043 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 464 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 464 using 'ggh4x' package ... Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 390 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 306 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-31 13:54:16.66664 | timeMax: 2024-10-29 13:53:15.037 | timeDiff: 7775938.37036014 nFacets: 4 nrow dataFiltered(): 546 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 594 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-31 16:54:32.091852 | timeMax: 2024-10-29 13:53:15.037 | timeDiff: 7772322.94514799 nFacets: 4 nrow dataFiltered(): 546 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 594 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240829_01_autoQC01_new_DPV.raw input timeRange: 7776000 | timeMin: 2024-08-30 13:54:06.043 | timeMax: 2024-10-29 13:54:08.05828 | timeDiff: 5184002.01528001 nFacets: 4 nrow dataFiltered(): 464 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-31 14:54:32.092 | timeMax: 2024-10-29 13:53:15.037 | timeDiff: 7772322.94499993 nFacets: 4 nrow dataFiltered(): 546 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 594 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-07-31 13:53:25.65265 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775999.28635001 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:45.25848 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775919.68052006 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:46.545949 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775918.39305067 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:47.804731 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775917.13426924 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:49.07941 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775915.85958958 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:50.374831 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775914.56416845 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:51.658925 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775913.28007531 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:52.941149 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775911.99785137 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:54.221485 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775910.71751499 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:55.509001 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775909.42999935 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:56.77243 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775908.16656971 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:58.035383 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775906.90361643 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:54:59.30438 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775905.63461947 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:00.582446 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775904.35655355 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:01.845027 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775903.09397268 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:03.106225 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775901.83277464 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:04.363434 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775900.57556629 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:05.666358 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775899.27264237 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:06.953551 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775897.9854486 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:08.228462 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775896.71053743 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:09.559723 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775895.37927723 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:10.825996 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775894.11300349 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:12.096919 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775892.84208107 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:13.357435 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775891.58156443 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:14.676052 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775890.26294756 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:15.96113 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775888.97786999 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:17.235655 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775887.70334482 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:18.508183 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775886.43081641 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:19.793161 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775885.1458385 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:21.070738 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775883.86826158 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:22.342933 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775882.59606695 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:23.627065 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775881.31193447 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:24.923108 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775880.01589155 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:26.199068 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775878.73993182 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:27.559596 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775877.37940431 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:28.863863 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775876.07513714 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:30.149108 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775874.78989172 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:31.439509 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775873.49949074 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:32.710032 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775872.22896814 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:34.043237 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775870.89576292 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:35.330414 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775869.6085856 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:36.618008 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775868.32099175 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:37.9165 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775867.02250028 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:39.231448 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775865.70755172 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:40.524222 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775864.41477823 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:41.808476 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775863.13052368 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:43.121032 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775861.81796813 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:44.412583 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775860.52641678 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:45.69593 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775859.24306941 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:47.004392 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775857.93460798 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:48.30688 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775856.63211989 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:49.602344 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775855.33665586 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:50.897887 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775854.04111242 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:52.186545 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775852.75245476 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:53.515016 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775851.42398357 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:55.052043 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775849.88695645 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:56.330515 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775848.60848498 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:57.606087 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775847.33291245 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:55:58.868889 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775846.07011056 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:00.118942 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775844.82005739 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:01.399274 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775843.53972578 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:02.659758 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775842.27924228 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:03.909823 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775841.02917695 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:05.175156 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775839.76384354 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:06.429958 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775838.50904179 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:07.683568 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775837.25543141 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:08.975283 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775835.96371651 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:10.234333 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775834.70466661 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:11.497043 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775833.44195724 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:12.752808 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775832.18619204 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:14.024668 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775830.91433144 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:15.315642 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775829.62335801 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:16.612972 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775828.32602763 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:17.896825 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775827.04217458 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:19.192202 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775825.74679756 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:20.476225 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775824.46277475 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:21.742978 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775823.19602227 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:23.010607 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775821.92839289 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:24.273767 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775820.66523266 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:25.569015 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775819.36998463 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:26.849705 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775818.08929491 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:28.120434 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775816.81856585 nFacets: 4 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-07-31 15:56:29.382819 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775815.55618119 input timeRange: 7776000 | timeMin: 2024-07-31 15:56:30.660863 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775814.27813673 nrow dataFiltered(): 1872 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730210042481077000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 input timeRange: 7776000 | timeMin: 2024-07-31 16:56:32.304008 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7772212.63499165 nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-07-31 13:56:30.66086 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7775814.27813983 nFacets: 4 nrow dataFiltered(): 1248 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 414 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-07-31 16:56:34.551663 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7772210.38733649 nFacets: 4 nrow dataFiltered(): 1248 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 414 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-07-31 14:56:32.304 | timeMax: 2024-10-29 13:53:24.939 | timeDiff: 7772212.63499999 nFacets: 4 nrow dataFiltered(): 1248 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 414 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 1248 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 15:56:40.771157 | timeMax: 2024-10-29 14:56:40.771752 | timeDiff: 5184000.00059533 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 13:56:40.771 | timeMax: 2024-10-29 13:56:40.772 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730210001524440000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730113554519221000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 962 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 288 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 962 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-31 13:57:50.86846 | timeMax: 2024-10-29 13:56:40.772 | timeDiff: 7775929.90354013 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-31 16:57:57.120508 | timeMax: 2024-10-29 13:56:40.772 | timeDiff: 7772323.65149164 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-07-31 14:57:57.121 | timeMax: 2024-10-29 13:56:40.772 | timeDiff: 7772323.65100002 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 594 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 594 using 'ggh4x' package ... nrow dataFiltered(): 594 using 'ggh4x' package ... nrow dataFiltered(): 414 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 594 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-07-31 14:54:32.092 | timeMax: 2024-10-29 15:20:39.763273 | timeDiff: 7773967.67127252 nFacets: 4 nrow dataFiltered(): 546 using 'ggh4x' package ... nrow dataFiltered(): 594 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 594 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-07-31 14:54:32.092 | timeMax: 2024-10-29 14:20:39.763 | timeDiff: 7773967.671 nFacets: 4 nrow dataFiltered(): 546 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 594 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-15 14:20:39.778 | timeMax: 2024-10-29 14:20:39.763 | timeDiff: 14428799.9849999 nFacets: 4 nrow dataFiltered(): 1378 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 918 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-02 14:20:44.72943 | timeMax: 2024-10-29 14:20:39.763 | timeDiff: 15551995.0335701 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-02 17:20:49.134175 | timeMax: 2024-10-29 14:20:39.763 | timeDiff: 15548390.6288254 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-02 15:20:49.134 | timeMax: 2024-10-29 14:20:39.763 | timeDiff: 15548390.6289999 input timeRange: 31536000 | timeMin: 2024-05-02 15:20:49.134 | timeMax: 2024-10-29 15:21:00.914684 | timeDiff: 15548411.780684 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-02 15:20:49.134 | timeMax: 2024-10-29 14:21:00.915 | timeDiff: 15548411.7809999 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-12-05 14:21:03.19 | timeMax: 2024-10-29 14:21:00.915 | timeDiff: 28425597.7249999 nFacets: 4 nrow dataFiltered(): 3666 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1332 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-30 14:21:08.45542 | timeMax: 2024-10-29 14:21:00.915 | timeDiff: 31535992.4595799 nFacets: 4 nrow dataFiltered(): 4238 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-30 16:21:17.465703 | timeMax: 2024-10-29 14:21:00.915 | timeDiff: 31532383.449297 nFacets: 4 nrow dataFiltered(): 4238 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-30 15:21:17.466 | timeMax: 2024-10-29 14:21:00.915 | timeDiff: 31532383.4489999 p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw input timeRange: 31536000 | timeMin: 2024-07-31 14:57:57.121 | timeMax: 2024-10-29 15:21:41.96613 | timeDiff: 7773824.84512949 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-07-31 14:57:57.121 | timeMax: 2024-10-29 14:21:41.966 | timeDiff: 7773824.84500003 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-30 14:21:44.36842 | timeMax: 2024-10-29 14:21:41.966 | timeDiff: 31535997.5975802 nFacets: 5 nrow dataFiltered(): 3497 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1710 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-30 16:21:47.565978 | timeMax: 2024-10-29 14:21:41.966 | timeDiff: 31532394.400022 nFacets: 5 nrow dataFiltered(): 3497 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1710 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-30 15:21:47.566 | timeMax: 2024-10-29 14:21:41.966 | timeDiff: 31532394.4000001 NA NA NA Warning in observe() : timeDiff is higher than timeRange nFacets: 5 nrow dataFiltered(): 2002 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1026 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-01 14:21:52.555 | timeMax: 2024-10-29 14:21:41.966 | timeDiff: 15638389.411 nFacets: 5 nrow dataFiltered(): 2158 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1170 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-03-26 14:31:22.964 | timeMax: 2024-10-29 14:21:41.966 | timeDiff: 18748219.0020001 nFacets: 4 nrow dataFiltered(): 1794 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1044 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-03-26 14:21:21.362 | timeMax: 2024-10-29 14:21:00.915 | timeDiff: 18748779.553 nrow dataFiltered(): 1170 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 1170 using 'ggh4x' package ... nrow dataFiltered(): 1170 using 'ggh4x' package ... nrow dataFiltered(): 1044 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 1044 using 'ggh4x' package ... nrow dataFiltered(): 1044 using 'ggh4x' package ... nrow dataFiltered(): 1044 using 'ggh4x' package ... nrow dataFiltered(): 1044 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 1044 using 'ggh4x' package ... nrow dataFiltered(): 1044 using 'ggh4x' package ... nrow dataFiltered(): 1170 using 'ggh4x' package ... nrow dataFiltered(): 1170 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730209991534515000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730210197361108000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 18:24:06.218382 | timeMax: 2024-10-29 17:24:06.218965 | timeDiff: 5184000.00058317 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 16:24:06.218 | timeMax: 2024-10-29 16:24:06.219 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 432 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 432 using 'ggh4x' package ... NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 390 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 306 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 18:24:19.49495 | timeMax: 2024-10-29 17:24:19.495534 | timeDiff: 5184000.00058413 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 18:24:23.412418 | timeMax: 2024-10-29 17:24:23.412994 | timeDiff: 5184000.00057554 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 16:24:19.495 | timeMax: 2024-10-29 16:24:19.496 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 432 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-30 16:24:23.412 | timeMax: 2024-10-29 16:24:23.413 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 962 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 288 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 962 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730219056066097000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 18:24:43.62319 | timeMax: 2024-10-29 17:24:43.623773 | timeDiff: 5184000.00058293 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-30 16:24:43.623 | timeMax: 2024-10-29 16:24:43.624 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 432 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240829_05_autoQC01_new_DPV.raw plotClick: fn has changed to /srv/www/htdocs//NA input timeRange: 15552000 | timeMin: 2024-08-30 16:24:06.218 | timeMax: 2024-10-29 17:25:00.447769 | timeDiff: 5184054.22976899 nFacets: 4 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-08-30 16:24:06.218 | timeMax: 2024-10-29 16:25:00.448 | timeDiff: 5184054.23000002 nFacets: 4 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 16:24:43.623 | timeMax: 2024-10-29 16:24:45.0521 | timeDiff: 5184001.42910028 nFacets: 4 nrow dataFiltered(): 432 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-02 16:25:01.89745 | timeMax: 2024-10-29 16:25:00.448 | timeDiff: 15551998.55055 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-02 19:25:04.91058 | timeMax: 2024-10-29 16:25:00.448 | timeDiff: 15548395.5374196 input timeRange: 7776000 | timeMin: 2024-08-30 16:24:43.623 | timeMax: 2024-10-29 16:24:45.052 | timeDiff: 5184001.42900014 nFacets: 4 nrow dataFiltered(): 432 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-02 17:25:04.911 | timeMax: 2024-10-29 16:25:00.448 | timeDiff: 15548395.5369999 input timeRange: 15552000 | timeMin: 2024-08-30 16:24:23.412 | timeMax: 2024-10-29 17:25:08.050819 | timeDiff: 5184044.63881922 nFacets: 4 nrow dataFiltered(): 962 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-08-30 16:24:23.412 | timeMax: 2024-10-29 16:25:08.051 | timeDiff: 5184044.63900018 nFacets: 4 nrow dataFiltered(): 962 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-10 16:25:08.059 | timeMax: 2024-10-29 16:25:08.051 | timeDiff: 14860799.9920001 nFacets: 5 nrow dataFiltered(): 2002 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1026 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-02 16:25:11.11343 | timeMax: 2024-10-29 16:25:08.051 | timeDiff: 15551996.9375701 nFacets: 5 nrow dataFiltered(): 2002 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1026 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-02 19:25:14.566576 | timeMax: 2024-10-29 16:25:08.051 | timeDiff: 15548393.4844239 nFacets: 5 nrow dataFiltered(): 2002 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1026 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-02 17:25:14.567 | timeMax: 2024-10-29 16:25:08.051 | timeDiff: 15548393.4840002 Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730219080129881000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA NA nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-02 17:25:04.911 | timeMax: 2024-10-29 17:31:08.630947 | timeDiff: 15548763.7199473 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-05-02 17:25:04.911 | timeMax: 2024-10-29 16:31:08.631 | timeDiff: 15548763.72 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-12-03 16:31:08.645 | timeMax: 2024-10-29 16:31:08.631 | timeDiff: 28598399.9860001 nFacets: 4 nrow dataFiltered(): 3666 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1350 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-05 16:31:10.167 | timeMax: 2024-10-29 16:31:08.631 | timeDiff: 31017598.464 nFacets: 4 nrow dataFiltered(): 4082 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-30 16:31:11.86678 | timeMax: 2024-10-29 16:31:08.631 | timeDiff: 31535996.76422 nFacets: 4 nrow dataFiltered(): 4238 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-30 18:31:15.287439 | timeMax: 2024-10-29 16:31:08.631 | timeDiff: 31532393.3435607 nFacets: 4 nrow dataFiltered(): 4238 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-10-30 17:31:15.287 | timeMax: 2024-10-29 16:31:08.631 | timeDiff: 31532393.3440001 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 18:31:21.117605 | timeMax: 2024-10-29 17:31:21.118197 | timeDiff: 5184000.00059247 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 432 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 16:31:21.118 | timeMax: 2024-10-29 16:31:21.118 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 1476 using 'ggh4x' package ... Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 390 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 306 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw NA nrow dataFiltered(): 306 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730219477716184000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 18:54:21.527921 | timeMax: 2024-10-29 17:54:21.528621 | timeDiff: 5184000.00069976 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 390 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 306 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 390 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 16:54:21.52792 | timeMax: 2024-10-29 16:54:21.52862 | timeDiff: 5184000.0007 nFacets: 4 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-30 16:54:21.528 | timeMax: 2024-10-29 16:54:21.529 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 390 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 4238 using 'ggh4x' package ... nrow dataFiltered(): 1476 using 'ggh4x' package ... p35114/Proteomics/LUMOS_1/analytic_20240508/20240508_C35114_005_autoQC03dia.raw NA nrow dataFiltered(): 4238 using 'ggh4x' package ... nrow dataFiltered(): 1476 using 'ggh4x' package ... nrow dataFiltered(): 4238 using 'ggh4x' package ... nrow dataFiltered(): 1476 using 'ggh4x' package ... p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p35272/Proteomics/LUMOS_1/analytic_20240617/20240617_C35272_012_autoQC03dia.raw NA nrow dataFiltered(): 4238 using 'ggh4x' package ... nrow dataFiltered(): 1476 using 'ggh4x' package ... nrow dataFiltered(): 4238 using 'ggh4x' package ... nrow dataFiltered(): 1476 using 'ggh4x' package ... nrow dataFiltered(): 4238 using 'ggh4x' package ... nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2023-10-30 17:31:15.287 | timeMax: 2024-10-29 18:40:27.223803 | timeDiff: 31536551.9368031 nFacets: 4 nrow dataFiltered(): 4238 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2023-10-30 17:31:15.287 | timeMax: 2024-10-29 17:40:27.224 | timeDiff: 31536551.937 nFacets: 4 nrow dataFiltered(): 4238 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2024-05-02 17:25:14.567 | timeMax: 2024-10-29 18:40:33.952312 | timeDiff: 15552919.3853123 nFacets: 5 nrow dataFiltered(): 2002 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1026 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2024-05-02 17:25:14.567 | timeMax: 2024-10-29 17:40:33.952 | timeDiff: 15552919.385 nFacets: 5 nrow dataFiltered(): 2002 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1026 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2022-10-30 17:40:35.35344 | timeMax: 2024-10-29 17:40:33.952 | timeDiff: 63071998.5985599 nFacets: 5 nrow dataFiltered(): 6799 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1710 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2022-10-30 19:40:39.709818 | timeMax: 2024-10-29 17:40:33.952 | timeDiff: 63068394.242182 nFacets: 5 nrow dataFiltered(): 6799 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1710 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2022-10-30 18:40:39.71 | timeMax: 2024-10-29 17:40:33.952 | timeDiff: 63068394.2419999 input timeRange: 63072000 | timeMin: 2022-10-30 17:40:28.59857 | timeMax: 2024-10-29 17:40:27.224 | timeDiff: 63071998.6254299 nFacets: 5 nrow dataFiltered(): 11609 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2022-10-30 19:40:44.029903 | timeMax: 2024-10-29 17:40:27.224 | timeDiff: 63068383.1940966 nFacets: 5 nrow dataFiltered(): 11609 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2022-10-30 18:40:44.03 | timeMax: 2024-10-29 17:40:27.224 | timeDiff: 63068383.194 NA p34167/Proteomics/LUMOS_1/roberts_20240213/20240213_007_autoQC03dda.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p31641/Proteomics/LUMOS_1/analytic_20230517/20230517_007_autoQC4L.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240212_032_autoQC03dda.raw NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730219059953909000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730219042783444000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730220858045282000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-30 20:51:03.323653 | timeMax: 2024-10-29 19:51:03.324225 | timeDiff: 5184000.00057292 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730227859875541000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 08:56:52.617047 | timeMax: 2024-10-30 07:56:52.61763 | timeDiff: 5184000.00058222 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-08-31 06:56:52.617 | timeMax: 2024-10-30 06:56:52.618 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730271409174660000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 09:15:14.357827 | timeMax: 2024-10-30 08:15:14.358412 | timeDiff: 5184000.00058484 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 07:15:14.358 | timeMax: 2024-10-30 07:15:14.358 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1088 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1088 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-23 09:15:40.352823 | timeMax: 2024-10-30 08:15:40.352849 | timeDiff: 604800.000025034 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730272540350132000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730272510884415000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 09:20:20.295002 | timeMax: 2024-10-30 08:20:20.295583 | timeDiff: 5184000.00058079 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1088 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-31 07:20:20.295 | timeMax: 2024-10-30 07:20:20.296 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1088 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 11:18:06.301791 | timeMax: 2024-10-30 10:18:06.302368 | timeDiff: 5184000.00057697 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 143 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 143 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-31 09:18:06.30179 | timeMax: 2024-10-30 09:18:06.30237 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-31 09:18:06.302 | timeMax: 2024-10-30 09:18:06.302 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1088 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-08-31 09:18:06.302 | timeMax: 2024-10-30 10:18:21.200622 | timeDiff: 5184014.8986218 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-08-31 09:18:06.302 | timeMax: 2024-10-30 09:18:21.201 | timeDiff: 5184014.89899993 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-12-28 09:18:22.511 | timeMax: 2024-10-30 09:18:21.201 | timeDiff: 26524798.6900001 nFacets: 4 nrow dataFiltered(): 5344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 5344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 5344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values or values outside the scale range (`geom_point()`). Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730279882878348000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 11:26:19.018625 | timeMax: 2024-10-30 10:26:19.019202 | timeDiff: 5184000.00057602 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 143 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 143 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-31 09:26:19.01863 | timeMax: 2024-10-30 09:26:19.0192 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-31 09:26:19.019 | timeMax: 2024-10-30 09:26:19.019 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 416 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-08 09:26:20.662 | timeMax: 2024-10-30 09:26:19.019 | timeDiff: 7171198.35700011 nFacets: 4 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-08-08 09:26:20.662 | timeMax: 2024-10-30 10:27:31.171135 | timeDiff: 7171270.50913477 nFacets: 4 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-08-08 09:26:20.662 | timeMax: 2024-10-30 09:27:31.171 | timeDiff: 7171270.50900006 nFacets: 4 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-14 09:27:32.457 | timeMax: 2024-10-30 09:27:31.171 | timeDiff: 14601598.714 nFacets: 4 nrow dataFiltered(): 1378 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 918 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730280375564568000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730272816834373000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 11:45:24.597828 | timeMax: 2024-10-30 10:45:24.598411 | timeDiff: 5184000.00058293 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 416 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-31 09:45:24.598 | timeMax: 2024-10-30 09:45:24.598 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 11:45:47.705276 | timeMax: 2024-10-30 10:45:47.70586 | timeDiff: 5184000.00058413 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp NA input timeRange: 15552000 | timeMin: 2024-08-31 09:45:24.598 | timeMax: 2024-10-30 10:46:00.543416 | timeDiff: 5184035.94541621 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 11:46:05.60878 | timeMax: 2024-10-30 10:46:05.609456 | timeDiff: 5184000.00067616 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 15552000 | timeMin: 2024-08-31 09:45:24.598 | timeMax: 2024-10-30 09:46:00.543 | timeDiff: 5184035.94499993 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730281544264943000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 416 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 09:46:05.609 | timeMax: 2024-10-30 09:46:05.609 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 416 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 416 using 'ggh4x' package ... Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 338 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 288 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA plotClick: input timeRange: 7776000 | timeMin: 2024-08-31 09:46:05.609 | timeMax: 2024-10-30 09:46:07.35233 | timeDiff: 5184001.74333 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-31 09:46:05.609 | timeMax: 2024-10-30 09:46:07.352 | timeDiff: 5184001.74300003 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-03 09:46:13.31258 | timeMax: 2024-10-30 09:46:00.543 | timeDiff: 15551987.2304199 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... input timeRange: 15552000 | timeMin: 2024-05-03 12:46:48.218132 | timeMax: 2024-10-30 09:46:00.543 | timeDiff: 15548352.324868 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730281562022292000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp input timeRange: 15552000 | timeMin: 2024-05-03 10:46:48.218 | timeMax: 2024-10-30 09:46:00.543 | timeDiff: 15548352.325 nFacets: 4 nrow dataFiltered(): 1430 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 11:46:55.160959 | timeMax: 2024-10-30 10:46:55.161654 | timeDiff: 5184000.00069427 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-31 09:46:55.161 | timeMax: 2024-10-30 09:46:55.162 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 416 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730281611665127000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240827_03_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240827_03_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240828_06_autoQC03dia_flex_emitter_on_top.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240821_03_autoQC03dia_flex.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240828_06_autoQC03dia_flex_emitter_on_top.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240828_06_autoQC03dia_flex_emitter_on_top.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_11_autoQC03dia_Flex.raw plotClick: fn has changed to 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has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240731_03_autoQC03dia.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_11_autoQC03dia_Flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_11_autoQC03dia_Flex.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_03_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240807_03_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 12:22:47.496567 | timeMax: 2024-10-30 11:22:47.497597 | timeDiff: 5184000.00103021 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-31 10:22:47.497 | timeMax: 2024-10-30 10:22:47.498 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1088 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730106309885985000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730281521106051000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 13:29:56.465012 | timeMax: 2024-10-30 12:29:56.465588 | timeDiff: 5184000.00057602 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730287793005624000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 13:30:41.482843 | timeMax: 2024-10-30 12:30:41.483431 | timeDiff: 5184000.00058794 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-08-31 11:30:41.483 | timeMax: 2024-10-30 11:30:41.483 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 416 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 416 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730287838034296000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-08-31 18:07:36.916071 | timeMax: 2024-10-30 17:07:36.917081 | timeDiff: 5184000.00101018 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 143 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 143 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-31 16:07:36.91607 | timeMax: 2024-10-30 16:07:36.91708 | timeDiff: 5184000.00101018 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-08-31 16:07:36.916 | timeMax: 2024-10-30 16:07:36.917 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw NA NA plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_008_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_008_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw plotClick: p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_004_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_004_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730304452328884000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-01 11:25:54.792378 | timeMax: 2024-10-31 10:25:54.793319 | timeDiff: 5184000.0009408 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 416 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-01 09:25:54.792 | timeMax: 2024-10-31 09:25:54.793 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-09-01 09:25:54.792 | timeMax: 2024-10-31 10:25:57.041595 | timeDiff: 5184002.2495954 nFacets: 4 nrow dataFiltered(): 416 using 'ggh4x' package ... Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 input timeRange: 31536000 | timeMin: 2024-09-01 09:25:54.792 | timeMax: 2024-10-31 09:25:57.042 | timeDiff: 5184002.25 nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 338 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 288 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 288 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-01 09:25:58.72881 | timeMax: 2024-10-31 09:25:57.042 | timeDiff: 31535998.31319 nFacets: 4 nrow dataFiltered(): 4186 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-01 11:26:02.301752 | timeMax: 2024-10-31 09:25:57.042 | timeDiff: 31532394.7402484 nFacets: 4 nrow dataFiltered(): 4186 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-01 10:26:02.302 | timeMax: 2024-10-31 09:25:57.042 | timeDiff: 31532394.74 nFacets: 4 nrow dataFiltered(): 4186 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_007_S580219_K562_incl_iRT_2_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_005_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_002_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_007_S580219_K562_incl_iRT_2_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231117_K562_DIA_autoQC/20231117_009_S580219_K562_incl_iRT_autoQC03dia.raw NA p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_005_S580219_K562_incl_iRT_1_autoQC03dia.raw p33212/Proteomics/LUMOS_1/roschi_20231202_K562_DIA_autoQC/20231202_007_S580219_K562_incl_iRT_2_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240104_autoQC/20240104_03_autoQC03dia.raw NA p34007/Proteomics/LUMOS_1/roschi_20240129_YEAST_DIA_insol/20240129_015_autoQC03dia.raw NA NA input timeRange: 63072000 | timeMin: 2023-11-01 10:26:02.302 | timeMax: 2024-10-31 10:33:07.883917 | timeDiff: 31532825.5819166 nFacets: 4 nrow dataFiltered(): 4186 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2023-11-01 10:26:02.302 | timeMax: 2024-10-31 09:33:07.884 | timeDiff: 31532825.582 nFacets: 4 nrow dataFiltered(): 4186 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... input timeRange: 63072000 | timeMin: 2023-06-11 09:33:09.654 | timeMax: 2024-10-31 09:33:07.884 | timeDiff: 43891198.23 nFacets: 4 nrow dataFiltered(): 6838 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1476 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240827_03_autoQC03dia_flex.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240806_11_autoQC03dia_Flex.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-01 11:45:58.078069 | timeMax: 2024-10-31 10:45:58.07865 | timeDiff: 5184000.00058079 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-01 09:45:58.078 | timeMax: 2024-10-31 09:45:58.079 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 143 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 143 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730367954287101000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730366750357192000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-01 14:49:22.50173 | timeMax: 2024-10-31 13:49:22.502333 | timeDiff: 5184000.00060296 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-09-01 12:49:22.502 | timeMax: 2024-10-31 12:49:22.502 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1014 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 270 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 1014 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw NA plotClick: p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw NA p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw plotClick: p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-01 14:50:18.385094 | timeMax: 2024-10-31 13:50:18.385944 | timeDiff: 5184000.00084972 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-01 12:50:18.385 | timeMax: 2024-10-31 12:50:18.386 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p36665/Proteomics/LUMOS_2/analytic_20241031/20241031_C36665_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36665/Proteomics/LUMOS_2/analytic_20241031/20241031_C36665_002_autoQC01.raw plotClick: Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730378959038029000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1014 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 270 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 1014 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730379014898095000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-01 16:01:11.694419 | timeMax: 2024-10-31 15:01:11.696729 | timeDiff: 5184000.0023098 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-09-01 14:01:11.694 | timeMax: 2024-10-31 14:01:11.697 | timeDiff: 5184000.00300002 nFacets: 4 nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1014 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 270 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 1014 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-01 16:15:34.310492 | timeMax: 2024-10-31 15:15:34.312497 | timeDiff: 5184000.0020051 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-09-01 14:15:34.31 | timeMax: 2024-10-31 14:15:34.313 | timeDiff: 5184000.00300002 nFacets: 4 nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730383265327933000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp p36665/Proteomics/LUMOS_2/analytic_20241031/20241031_C36665_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36665/Proteomics/LUMOS_2/analytic_20241031/20241031_C36665_002_autoQC01.raw NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1014 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 270 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 1014 using 'ggh4x' package ... NA p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw NA p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-01 18:27:11.989808 | timeMax: 2024-10-31 17:27:11.990607 | timeDiff: 5184000.00079846 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-01 16:27:11.99 | timeMax: 2024-10-31 16:27:11.991 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730392028541715000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-01 18:40:23.755146 | timeMax: 2024-10-31 17:40:23.756205 | timeDiff: 5184000.00105953 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730392819960967000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-02 07:46:49.322814 | timeMax: 2024-11-01 06:46:49.323929 | timeDiff: 5184000.00111485 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730440005391777000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-02 09:00:48.805804 | timeMax: 2024-11-01 08:00:48.806832 | timeDiff: 5184000.00102878 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1184 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-02 07:00:48.806 | timeMax: 2024-11-01 07:00:48.807 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 306 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw plotClick: Plotting chromatograms ... input timeRange: 31536000 | timeMin: 2024-09-02 07:00:48.806 | timeMax: 2024-11-01 08:04:09.335379 | timeDiff: 5184200.52937865 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... Plotting chromatograms ... input timeRange: 31536000 | timeMin: 2024-09-02 07:00:48.806 | timeMax: 2024-11-01 07:04:09.335 | timeDiff: 5184200.52900004 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-02 07:04:11.49614 | timeMax: 2024-11-01 07:04:09.335 | timeDiff: 31535997.83886 nFacets: 1 nrow dataFiltered(): 1716 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1062 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-02 09:04:17.315752 | timeMax: 2024-11-01 07:04:09.335 | timeDiff: 31532392.019248 nFacets: 1 nrow dataFiltered(): 1716 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1062 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-11-02 08:04:17.316 | timeMax: 2024-11-01 07:04:09.335 | timeDiff: 31532392.0190001 NA p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_004_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/spfammatter_20241029/20241029_007_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_1/roschi_20241031/20241021_004_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_1/roschi_20241031/20241021_004_autoQC03dia.raw vals$rawrr: TRUE plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/roschi_20241031/20241021_004_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/roschi_20241031/20241021_004_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Plotting chromatograms ... p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_003r_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_1/roschi_20241031/20241021_004_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_005_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_005_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/cfortes_20241024/20241024_005_autoQC03dia.raw Plotting chromatograms ... p3000/Proteomics/EXPLORIS_1/spfammatter_20241021/20241021_003r_autoQC03dia.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240226/20240226_003_autoQC03dia.raw Plotting chromatograms ... NA p34715/Proteomics/EXPLORIS_1/analytic_20240328/20240328_C34715_008_autoQC03dia.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_004_autoQC03dia.raw Read 22032 items Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_004_autoQC03dia.raw Plotting chromatograms ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_004_autoQC03dia.raw p34715/Proteomics/EXPLORIS_1/analytic_20240328/20240328_C34715_008_autoQC03dia.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240506/20240506_004_autoQC03dia.raw p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_005_autoQC03dia.raw p34715/Proteomics/EXPLORIS_1/analytic_20240328/20240328_C34715_008_autoQC03dia.raw p3000/Proteomics/EXPLORIS_1/lkunz_20240408/20240408_004_autoQC03dia.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730444444808003000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-02 09:38:48.439981 | timeMax: 2024-11-01 08:38:48.442153 | timeDiff: 5184000.00217199 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-09-02 07:38:48.44 | timeMax: 2024-11-01 07:38:48.442 | timeDiff: 5184000.00199986 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1184 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA p36665/Proteomics/LUMOS_2/analytic_20241031/20241031_C36665_011_autoQC01.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730384128092438000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA p36665/Proteomics/LUMOS_2/analytic_20241031/20241031_C36665_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36665/Proteomics/LUMOS_2/analytic_20241031/20241031_C36665_011_autoQC01.raw NA p36665/Proteomics/LUMOS_2/analytic_20241031/20241031_C36665_011_autoQC01.raw NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1014 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 270 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 1014 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20241030_autoQC/20241030_003_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw NA p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-02 09:55:48.961302 | timeMax: 2024-11-01 08:55:48.962261 | timeDiff: 5184000.0009594 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-02 07:55:48.961 | timeMax: 2024-11-01 07:55:48.962 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730283759767978000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 312 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 216 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... p36513/Proteomics/FUSION_2/josephinekempis_20241031/20241031_004_autoQC03dda.raw NA p36578/Proteomics/FUSION_2/rhweldon_20241015/20241015_011_autoQC03dda.raw NA p36513/Proteomics/FUSION_2/josephinekempis_20241031/20241031_004_autoQC01.raw p36760/Proteomics/FUSION_2/adelizliang_20241031/20241031_004_autoQC01_20241031215455.raw p36513/Proteomics/FUSION_2/josephinekempis_20241031/20241031_004_autoQC01.raw p36760/Proteomics/FUSION_2/adelizliang_20241031/20241031_004_autoQC01_20241031215455.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-02 10:31:47.560577 | timeMax: 2024-11-01 09:31:47.561157 | timeDiff: 5184000.00058007 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-02 08:31:47.561 | timeMax: 2024-11-01 08:31:47.561 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/EXPLORIS_1/roschi_20241031/20241101_001_autoQC01.raw NA p3000/Proteomics/EXPLORIS_1/roschi_20241031/20241101_001_autoQC01.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730449903712776000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-25 10:48:46.638126 | timeMax: 2024-11-01 09:48:46.638166 | timeDiff: 604800.000039577 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730450926633746000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-02 11:14:40.626623 | timeMax: 2024-11-01 10:14:40.62738 | timeDiff: 5184000.0007565 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1184 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-02 09:14:40.627 | timeMax: 2024-11-01 09:14:40.627 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730446721834295000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-02 11:33:45.051238 | timeMax: 2024-11-01 10:33:45.051849 | timeDiff: 5184000.00061059 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-09-02 09:33:45.051 | timeMax: 2024-11-01 09:33:45.052 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1184 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1184 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730452475574264000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp p36665/Proteomics/LUMOS_2/analytic_20241031/20241031_C36665_011_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36665/Proteomics/LUMOS_2/analytic_20241031/20241031_C36665_011_autoQC01.raw NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1014 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 270 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 270 using 'ggh4x' package ... nrow dataFiltered(): 1014 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-02 12:50:57.820848 | timeMax: 2024-11-01 11:50:57.821425 | timeDiff: 5184000.00057721 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 312 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 216 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 312 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 216 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-02 10:50:57.82085 | timeMax: 2024-11-01 10:50:57.82142 | timeDiff: 5184000.00056982 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-02 10:50:57.821 | timeMax: 2024-11-01 10:50:57.821 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730447744114383000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241011_05_autoQC03dia_flex.raw nFacets: 4 nrow dataFiltered(): 1014 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... NA p36620/Proteomics/LUMOS_2/analytic_20241025/20241025_C36620_011_autoQC03dia.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730453621336897000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-04 15:17:01.523484 | timeMax: 2024-11-03 14:17:01.524063 | timeDiff: 5184000.0005784 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1120 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-04 13:17:01.523 | timeMax: 2024-11-03 13:17:01.524 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730639818055617000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-04 16:08:30.098488 | timeMax: 2024-11-03 15:08:30.099736 | timeDiff: 5184000.00124812 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1120 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-04 14:08:30.098 | timeMax: 2024-11-03 14:08:30.1 | timeDiff: 5184000.00199986 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730642903764292000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-05 10:32:05.658197 | timeMax: 2024-11-04 09:32:05.658774 | timeDiff: 5184000.00057673 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-05 08:32:05.658 | timeMax: 2024-11-04 08:32:05.659 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 364 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 198 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730709122182759000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-28 12:19:10.675887 | timeMax: 2024-11-04 12:19:10.675941 | timeDiff: 604800.000054359 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730719150668667000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-05 15:47:30.004832 | timeMax: 2024-11-04 14:47:30.00541 | timeDiff: 5184000.00057745 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1120 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-05 13:47:30.005 | timeMax: 2024-11-04 13:47:30.005 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 143 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 143 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/lkunz_20241104/20241104_002_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20241104/20241104_002_autoQC03dda.raw p36630/Proteomics/EXPLORIS_2/analytic_20241101/20241101_C36630_022_autoQC03dia.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730728046546516000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-05 15:54:19.725049 | timeMax: 2024-11-04 14:54:19.726134 | timeDiff: 5184000.0010848 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-09-05 13:54:19.725 | timeMax: 2024-11-04 13:54:19.726 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1120 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1120 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-05 15:55:39.965521 | timeMax: 2024-11-04 14:55:39.966146 | timeDiff: 5184000.00062561 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-09-05 13:55:39.966 | timeMax: 2024-11-04 13:55:39.966 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1120 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1120 using 'ggh4x' package ... nrow dataFiltered(): 1120 using 'ggh4x' package ... nrow dataFiltered(): 1120 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 352 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730728454988530000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 338 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 252 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730728536513232000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-05 17:26:57.173036 | timeMax: 2024-11-04 16:26:57.173817 | timeDiff: 5184000.00078154 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 143 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 143 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-05 15:26:57.17304 | timeMax: 2024-11-04 15:26:57.17382 | timeDiff: 5184000.00077987 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-05 15:26:57.173 | timeMax: 2024-11-04 15:26:57.174 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... p3000/Proteomics/FUSION_2/chiawei_20241028/20241028_003_autoQC03dia.raw NA p3000/Proteomics/FUSION_2/chiawei_20241028/20241028_003_autoQC03dia.raw p36752/Proteomics/FUSION_2/analytic_20241101/20241031_C36752_005_autoQC03dda.raw NA p36752/Proteomics/FUSION_2/analytic_20241101/20241031_C36752_005_autoQC03dda.raw NA NA p3000/Proteomics/FUSION_2/chiawei_20241028/20241028_003_autoQC03dia.raw nFacets: 4 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241011_04_autoQC03dda_from_scratch.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20241008_autoQC/20241011_05_autoQC03dia_flex.raw NA nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/cfortes_20241104_autoQC/20241104_003_autoQC03dda.raw p3000/Proteomics/LUMOS_2/cfortes_20241104_autoQC/20241104_003_autoQC03dda.raw p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_022_autoQC03dia.raw NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730734012449663000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-05 17:49:55.207362 | timeMax: 2024-11-04 16:49:55.207942 | timeDiff: 5184000.00057936 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-05 15:49:55.207 | timeMax: 2024-11-04 15:49:55.208 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1200 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730458254393172000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 364 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 216 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... p36752/Proteomics/FUSION_2/analytic_20241101/20241031_C36752_005_autoQC03dda.raw NA p36752/Proteomics/FUSION_2/analytic_20241101/20241031_C36752_005_autoQC03dda.raw NA p3000/Proteomics/FUSION_2/chiawei_20241104/20241104_003_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-05 18:28:54.867672 | timeMax: 2024-11-04 17:28:54.868256 | timeDiff: 5184000.00058317 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 324 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 1040 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-05 16:28:54.86767 | timeMax: 2024-11-04 16:28:54.86826 | timeDiff: 5184000.00059009 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-05 16:28:54.868 | timeMax: 2024-11-04 16:28:54.868 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/cfortes_20241104_autoQC/20241104_003_autoQC03dda.raw NA NA Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 282458 autoQC01 module APEX long nrow: 0 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 autoQC01 module APEX long nrow: 936 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_point()`). nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20241104_autoQC/20241104_002_autoQC01.raw p3000/Proteomics/LUMOS_2/cfortes_20241104_autoQC/20241104_002_autoQC01.raw NA p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_021_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_021_autoQC01.raw NA p3000/Proteomics/LUMOS_2/cfortes_20241104_autoQC/20241104_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20241104_autoQC/20241104_002_autoQC01.raw NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730737731391741000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-06 09:51:14.698711 | timeMax: 2024-11-05 08:51:14.699306 | timeDiff: 5184000.00059533 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-06 07:51:14.699 | timeMax: 2024-11-05 07:51:14.699 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1040 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 324 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 1040 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730793071246730000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA p3000/Proteomics/FUSION_2/chiawei_20241104/20241104_001_autoQC01.raw p3000/Proteomics/FUSION_2/chiawei_20241104/20241104_001_autoQC01.raw p36752/Proteomics/FUSION_2/analytic_20241101/20241031_C36752_004_autoQC01.raw p3000/Proteomics/FUSION_2/chiawei_20241104/20241104_001_autoQC01.raw p3000/Proteomics/FUSION_2/chiawei_20241104/20241104_002_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-06 15:52:10.554652 | timeMax: 2024-11-05 14:52:10.5559 | timeDiff: 5184000.00124812 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-09-06 13:52:10.555 | timeMax: 2024-11-05 13:52:10.556 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730735391744183000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_003_autoQC01.raw p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_002_autoQC01.raw p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_003_autoQC01.raw NA p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_003_autoQC01.raw NA p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_002_autoQC01.raw NA p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_002_autoQC01.raw NA p36752/Proteomics/FUSION_2/analytic_20241101/20241031_C36752_004_autoQC01.raw NA p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_003_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_003_autoQC01.raw NA p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_003_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_003_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_002_autoQC01.raw Reading raw file: /srv/www/htdocs//p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_002_autoQC01.raw Plotting chromatograms ... Read 22032 items plotClick: p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_003_autoQC01.raw p26109/Proteomics/FUSION_2/roschi_20241105_Noemi_training/20241105_003_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-06 15:58:55.62839 | timeMax: 2024-11-05 14:58:55.628968 | timeDiff: 5184000.00057793 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-06 13:58:55.628 | timeMax: 2024-11-05 13:58:55.629 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730815132170986000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-10-29 17:22:30.056123 | timeMax: 2024-11-05 17:22:30.056166 | timeDiff: 604800.000043631 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730823750050752000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-07 11:43:19.361788 | timeMax: 2024-11-06 10:43:19.362477 | timeDiff: 5184000.00068855 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1296 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-07 09:43:19.362 | timeMax: 2024-11-06 09:43:19.362 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/LUMOS_2/cfortes_20241105_autoQC/20241105_002_autoQC01.raw p3000/Proteomics/LUMOS_2/cfortes_20241105_autoQC/20241105_002_autoQC01.raw p3000/Proteomics/LUMOS_2/cfortes_20241105_autoQC/20241105_002_autoQC01.raw NA p3000/Proteomics/LUMOS_2/cfortes_20241105_autoQC/20241105_002_autoQC01.raw NA p3000/Proteomics/LUMOS_2/cfortes_20241105_autoQC/20241105_005_autoQC01.raw p3000/Proteomics/LUMOS_2/cfortes_20241105_autoQC/20241105_006_autoQC01.raw NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1092 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 1092 using 'ggh4x' package ... NA NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730886195935696000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 364 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 216 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1730814726601653000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file