Listening on http://127.0.0.1:44225 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-22 12:44:33.373935 | timeMax: 2024-11-21 11:44:33.374526 | timeDiff: 5184000.00059104 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 736 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 736 Loading required package: ggh4x Loading required package: ggplot2 Attaching package: 'ggh4x' The following object is masked from 'package:ggplot2': guide_axis_logticks using 'ggh4x' package ... Warning: Removed 40 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-09-22 10:44:33.374 | timeMax: 2024-11-21 10:44:33.375 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 736 using 'ggh4x' package ... Warning: Removed 40 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). NA p36987/Proteomics/QEXACTIVE_1/analytic_20241120/20241120_C36987_005_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_002_autoQC01.raw p36987/Proteomics/QEXACTIVE_1/analytic_20241120/20241120_C36987_002_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_002_autoQC01.raw p36987/Proteomics/QEXACTIVE_1/analytic_20241120/20241120_C36987_002_autoQC01.raw p36987/Proteomics/QEXACTIVE_1/analytic_20241120/20241120_C36987_002_autoQC01.raw NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 247 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 0 nrow dataFiltered(): 0 nrow dataFiltered(): 247 using 'ggh4x' package ... p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_003_autoQC03dda.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_003_autoQC03dda.raw p36883/Proteomics/QEXACTIVE_1/analytic_20241115/20241115_C36883_007_autoQC03dda.raw NA p36883/Proteomics/QEXACTIVE_1/analytic_20241115/20241115_C36883_007_autoQC03dda.raw p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_003_autoQC03dda.raw NA NA p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_003_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-22 17:20:33.190773 | timeMax: 2024-11-21 16:20:33.19138 | timeDiff: 5184000.00060678 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-22 15:20:33.191 | timeMax: 2024-11-21 15:20:33.191 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 208 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 324 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 324 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... p36602/Proteomics/EXPLORIS_1/wilkin_20241120_2024NOV20_LITHUANIA/20241120_020_autoQC03dda.raw nrow dataFiltered(): 208 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 208 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732202429633570000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-23 11:43:46.962136 | timeMax: 2024-11-22 10:43:46.962707 | timeDiff: 5184000.00057149 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1248 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1248 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-23 09:43:46.962 | timeMax: 2024-11-22 09:43:46.963 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1248 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732268623453315000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-26 09:11:44.30333 | timeMax: 2024-11-25 08:11:44.303904 | timeDiff: 5184000.00057387 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1328 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-09-26 07:11:44.303 | timeMax: 2024-11-25 07:11:44.304 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1328 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1328 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-26 10:07:23.19009 | timeMax: 2024-11-25 09:07:23.190665 | timeDiff: 5184000.00057507 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 208 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 306 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-26 08:07:23.19009 | timeMax: 2024-11-25 08:07:23.19067 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-26 08:07:23.19 | timeMax: 2024-11-25 08:07:23.191 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732522039449468000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-26 11:20:14.320725 | timeMax: 2024-11-25 10:20:14.3213 | timeDiff: 5184000.00057483 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 180 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-26 09:20:14.32073 | timeMax: 2024-11-25 09:20:14.3213 | timeDiff: 5184000.00057006 nFacets: 4 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-26 09:20:14.321 | timeMax: 2024-11-25 09:20:14.321 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1088 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). NA p37007/Proteomics/FUSION_2/damontruffer_20241123/20241123_001_autoQC01.raw p37007/Proteomics/FUSION_2/damontruffer_20241123/20241123_001_autoQC01.raw NA p37007/Proteomics/FUSION_2/damontruffer_20241123/20241123_005_autoQC03dda.raw nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... p25334/Proteomics/LUMOS_2/dlesli_20241114_DLP252/20241119_030_autoQC03dda.raw NA p25334/Proteomics/LUMOS_2/dlesli_20241114_DLP252/20241119_030_autoQC03dda.raw p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_006_autoQC03dia.raw NA p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_006_autoQC03dia.raw NA nFacets: 4 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... p3000/Proteomics/FUSION_2/chiawei_20241118/20241118_002_autoQC03dia.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732526410534889000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-26 11:39:58.515894 | timeMax: 2024-11-25 10:39:58.51648 | timeDiff: 5184000.00058675 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732527595028353000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-26 11:41:16.312353 | timeMax: 2024-11-25 10:41:16.312932 | timeDiff: 5184000.00057983 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1088 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-09-26 09:41:16.312 | timeMax: 2024-11-25 09:41:16.313 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1088 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 4 rows containing missing values or values outside the scale range (`geom_line()`). Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 180 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732518700604482000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-27 09:43:02.190144 | timeMax: 2024-11-26 08:43:02.190717 | timeDiff: 5184000.0005734 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1520 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-27 07:43:02.19 | timeMax: 2024-11-26 07:43:02.191 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_005_autoQC01.raw NA p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_005_autoQC01.raw p3000/Proteomics/LUMOS_2/cfortes_20241125_autoQC/20241125_006_autoQC01.raw NA p3000/Proteomics/LUMOS_2/cfortes_20241125_autoQC/20241125_005_autoQC01.raw p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_005_autoQC01.raw p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_001_autoQC01.raw NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1092 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 1092 using 'ggh4x' package ... p3000/Proteomics/LUMOS_2/cfortes_20241125_autoQC/20241125_003_autoQC03dda.raw p3000/Proteomics/LUMOS_2/cfortes_20241125_autoQC/20241125_003_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/cfortes_20241125_autoQC/20241125_003_autoQC03dda.raw NA p3000/Proteomics/LUMOS_2/cfortes_20241125_autoQC/20241125_004_autoQC03dia.raw NA p3000/Proteomics/LUMOS_2/cfortes_20241125_autoQC/20241125_004_autoQC03dia.raw p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_005_autoQC01.raw p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_001_autoQC01.raw p36913/Proteomics/LUMOS_2/analytic_20241122/20241122_C36913_018_autoQC01.raw p36983/Proteomics/LUMOS_2/analytic_20241122/20241122_C36983_001_autoQC01.raw NA p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_001_autoQC01.raw NA p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_001_autoQC01.raw p37010/Proteomics/LUMOS_2/analytic_20241122/20241122_C37010_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-27 10:18:25.441557 | timeMax: 2024-11-26 09:18:25.443441 | timeDiff: 5184000.00188375 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-09-27 08:18:25.442 | timeMax: 2024-11-26 08:18:25.443 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732527672570598000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 198 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732609095572971000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-27 13:43:10.638668 | timeMax: 2024-11-26 12:43:10.640211 | timeDiff: 5184000.00154305 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 624 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-09-27 11:43:10.639 | timeMax: 2024-11-26 11:43:10.64 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 624 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 624 using 'ggh4x' package ... Warning: Removed 36 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_line()`). NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732185869024913000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp p37008/Proteomics/QEXACTIVE_1/analytic_20241126/20241126_C37008_001_autoQC01.raw nrow dataFiltered(): 624 using 'ggh4x' package ... Warning: Removed 72 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 6 rows containing missing values or values outside the scale range (`geom_line()`). NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 208 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 0 nrow dataFiltered(): 0 nrow dataFiltered(): 208 using 'ggh4x' package ... p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_003_autoQC03dda.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_003_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-27 16:53:05.091507 | timeMax: 2024-11-26 15:53:05.092195 | timeDiff: 5184000.0006876 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-27 14:53:05.092 | timeMax: 2024-11-26 14:53:05.092 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 1424 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 26 rows containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). nrow dataFiltered(): 1424 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). vals$rawrr: TRUE vals$rawDiag: TRUE p36791/Proteomics/EXPLORIS_1/analytic_20241121/20241121_C36791_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p36791/Proteomics/EXPLORIS_1/analytic_20241121/20241121_C36791_001_autoQC01.raw plotChargeState Reading raw file: /srv/www/htdocs//p36791/Proteomics/EXPLORIS_1/analytic_20241121/20241121_C36791_001_autoQC01.raw Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 194: FUN 193: .isAssemblyWorking 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotProfiles 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp reading index for 20241121_C36791_001_autoQC01.raw... Warning: Error in : BiocParallel errors 1 remote errors, element index: 1 0 unevaluated and other errors first remote error: Error in .isAssemblyWorking(): 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 199: 198: stop 197: .bpinit 196: bplapply 194: BiocParallel::bplapply 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: data 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp p28115/Proteomics/EXPLORIS_1/wzhong_20241015_main_trial1_Oct16/20241015_021_autoQC01.raw p36671/Proteomics/EXPLORIS_1/analytic_20241023/20241023_C36671_001_autoQC01.raw p36671/Proteomics/EXPLORIS_1/analytic_20241023/20241023_C36671_001_autoQC01.raw NA p36791/Proteomics/EXPLORIS_1/analytic_20241121/20241121_C36791_001_autoQC01.raw p36791/Proteomics/EXPLORIS_1/analytic_20241121/20241121_C36791_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20241125/20241120_002a_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20241125/20241120_002a_autoQC01.raw Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 194: FUN 193: .isAssemblyWorking 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotProfiles 1: runApp p3000/Proteomics/EXPLORIS_1/antdit_20241125/20241120_002a_autoQC01.raw reading index for 20241120_002a_autoQC01.raw... Warning: Error in : BiocParallel errors 1 remote errors, element index: 1 0 unevaluated and other errors first remote error: Error in .isAssemblyWorking(): 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 199: 198: stop 197: .bpinit 196: bplapply 194: BiocParallel::bplapply 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: data 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732606978694061000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732632781592567000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-29 09:32:59.018216 | timeMax: 2024-11-28 08:32:59.018819 | timeDiff: 5184000.00060248 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1360 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-29 07:32:59.018 | timeMax: 2024-11-28 07:32:59.019 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1520 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732779174517199000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-30 07:10:05.186711 | timeMax: 2024-11-29 06:10:05.187504 | timeDiff: 5184000.00079322 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1392 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1392 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-09-30 05:10:05.187 | timeMax: 2024-11-29 05:10:05.188 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). NA p36972/Proteomics/EXPLORIS_1/sschuerch_20241128/20241128_002_autoQC01.raw p37028/Proteomics/EXPLORIS_1/asahoo_20241128/20241128_004_autoQC01.raw p36972/Proteomics/EXPLORIS_1/sschuerch_20241128/20241128_002_autoQC01.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732856999596070000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-09-30 08:53:09.681597 | timeMax: 2024-11-29 07:53:09.682796 | timeDiff: 5184000.00119972 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1600 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-09-30 06:53:09.682 | timeMax: 2024-11-29 06:53:09.683 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1600 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732863180922486000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 09:41:08.228673 | timeMax: 2024-12-02 08:41:08.229957 | timeDiff: 5184000.00128436 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 07:41:08.229 | timeMax: 2024-12-02 07:41:08.23 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1424 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 10:59:56.875028 | timeMax: 2024-12-02 09:59:56.875767 | timeDiff: 5184000.00073886 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1152 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1152 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-10-03 08:59:56.875 | timeMax: 2024-12-02 08:59:56.876 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 180 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... NA p37121/Proteomics/FUSION_2/adelizliang_20241129/20241129_011_autoQC03dda.raw NA NA nFacets: 4 nrow dataFiltered(): 1092 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... p37038/Proteomics/LUMOS_2/analytic_20241126/20241126_C37038_026_autoQC03dda.raw p37038/Proteomics/LUMOS_2/analytic_20241126/20241126_C37038_026_autoQC03dda.raw nrow dataFiltered(): 1092 using 'ggh4x' package ... nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 1092 using 'ggh4x' package ... nrow dataFiltered(): 360 using 'ggh4x' package ... NA p37038/Proteomics/LUMOS_2/analytic_20241126/20241126_C37038_026_autoQC03dda.raw NA p37038/Proteomics/LUMOS_2/analytic_20241126/20241126_C37038_026_autoQC03dda.raw NA p37038/Proteomics/LUMOS_2/analytic_20241126/20241126_C37038_026_autoQC03dda.raw NA p37033/Proteomics/LUMOS_2/analytic_20241126/20241128_C37033_020_autoQC03dia.raw p3000/Proteomics/LUMOS_2/pgehrig_20241009_autoQC/20241011_004_autoQC03dda.raw nFacets: 4 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA p37121/Proteomics/FUSION_2/adelizliang_20241129/20241129_011_autoQC03dda.raw p37064/Proteomics/FUSION_2/lorerossi_20241126/20241126_020_autoQC03dia.raw nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 180 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). p37121/Proteomics/FUSION_2/adelizliang_20241129/20241129_010_autoQC01.raw NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733129991410704000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 11:27:00.564194 | timeMax: 2024-12-02 10:27:00.565893 | timeDiff: 5184000.00169873 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-10-03 09:27:00.564 | timeMax: 2024-12-02 09:27:00.566 | timeDiff: 5184000.00200009 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1424 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733125260912265000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 208 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 11:38:16.89484 | timeMax: 2024-12-02 10:38:16.896227 | timeDiff: 5184000.00138617 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 378 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 09:38:16.89484 | timeMax: 2024-12-02 09:38:16.89623 | timeDiff: 5184000.00138998 nFacets: 1 nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 378 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 09:38:16.895 | timeMax: 2024-12-02 09:38:16.896 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 378 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 378 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733132289619188000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 15:07:14.206978 | timeMax: 2024-12-02 14:07:14.208552 | timeDiff: 5184000.0015738 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 180 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-03 13:07:14.20698 | timeMax: 2024-12-02 13:07:14.20855 | timeDiff: 5184000.00156999 nFacets: 4 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-03 13:07:14.207 | timeMax: 2024-12-02 13:07:14.209 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... NA NA p37064/Proteomics/FUSION_2/lorerossi_20241126/20241126_020_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 15:07:47.994538 | timeMax: 2024-12-02 14:07:47.996013 | timeDiff: 5184000.00147581 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 180 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 13:07:47.99454 | timeMax: 2024-12-02 13:07:47.99601 | timeDiff: 5184000.00147009 nFacets: 4 nrow dataFiltered(): 468 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 180 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 13:07:47.995 | timeMax: 2024-12-02 13:07:47.996 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 468 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 180 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733144825640286000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1168 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values or values outside the scale range (`geom_point()`). p36979/Proteomics/FUSION_2/damontruffer_20241119/20241119_006_autoQC01.raw NA NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733131612993073000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 15:54:46.124607 | timeMax: 2024-12-02 14:54:46.126297 | timeDiff: 5184000.00168991 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 13:54:46.12461 | timeMax: 2024-12-02 13:54:46.1263 | timeDiff: 5184000.00168991 nFacets: 1 nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-03 13:54:46.125 | timeMax: 2024-12-02 13:54:46.126 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/antdit_20241202/20241202_003_autoQC03dda.raw nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_003_autoQC03dda.raw nrow dataFiltered(): 221 using 'ggh4x' package ... NA p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/antdit_20241202/20241202_003_autoQC03dda.raw NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733147678943756000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp p37008/Proteomics/QEXACTIVE_1/analytic_20241126/20241126_C37008_001_autoQC01.raw NA p37008/Proteomics/QEXACTIVE_1/analytic_20241126/20241126_C37008_001_autoQC01.raw NA p37008/Proteomics/QEXACTIVE_1/analytic_20241126/20241126_C37008_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-04 11:23:33.360563 | timeMax: 2024-12-03 10:23:33.362525 | timeDiff: 5184000.00196195 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733217807047835000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733144861779607000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-04 14:48:02.961799 | timeMax: 2024-12-03 13:48:02.963264 | timeDiff: 5184000.00146532 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1648 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-04 12:48:02.962 | timeMax: 2024-12-03 12:48:02.963 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1648 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). p3000/Proteomics/EXPLORIS_1/antdit_20241202/20241202_002a_autoQC01.raw p3000/Proteomics/EXPLORIS_1/antdit_20241202/20241202_002a_autoQC01.raw p3000/Proteomics/EXPLORIS_1/antdit_20241202/20241202_002a_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20241202/20241202_002a_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20241202/20241202_002a_autoQC01.raw Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 194: FUN 193: .isAssemblyWorking 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotProfiles 1: runApp plotClick: p3000/Proteomics/EXPLORIS_1/antdit_20241202/20241202_002a_autoQC01.raw p3000/Proteomics/EXPLORIS_1/antdit_20241202/20241202_002a_autoQC01.raw plotClick: NA vals$rawrr: FALSE vals$rawDiag: TRUE plotChargeState reading index for 20241202_002a_autoQC01.raw... Warning: Error in : BiocParallel errors 1 remote errors, element index: 1 0 unevaluated and other errors first remote error: Error in .isAssemblyWorking(): 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 199: 198: stop 197: .bpinit 196: bplapply 194: BiocParallel::bplapply 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: data 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawDiag-autoQC03-plot 1: runApp p3000/Proteomics/EXPLORIS_1/antdit_20241202/20241202_002a_autoQC01.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-04 15:45:43.623075 | timeMax: 2024-12-03 14:45:43.624645 | timeDiff: 5184000.00157046 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1664 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-04 13:45:43.623 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1664 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_001_autoQC01.raw p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_001_autoQC01.raw p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_001_autoQC01.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733230076305936000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_001_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2024-09-04 13:45:45.33308 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775998.29191995 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:14.885843 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775968.73915696 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:16.512019 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775967.11298084 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:18.101869 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775965.52313113 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:19.644499 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775963.98050141 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:21.222836 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775962.40216351 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:22.803095 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775960.82190514 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:24.269573 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775959.35542703 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:25.858739 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775957.76626062 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:27.464762 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775956.16023779 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:29.073471 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775954.55152893 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:30.72125 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775952.90374994 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:32.454713 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775951.17028666 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:34.101309 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775949.52369094 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:35.755423 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775947.86957669 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:37.426172 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775946.19882798 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:39.063651 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775944.56134868 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:40.679288 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775942.94571209 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:42.321698 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775941.30330157 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:43.952847 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775939.672153 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:45.582987 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775938.04201293 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:47.214945 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775936.41005468 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:48.769208 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775934.85579157 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:50.408092 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775933.2169075 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:51.975704 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775931.64929581 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:53.541611 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775930.08338881 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:55.093198 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775928.53180194 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:56.691806 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775926.9331944 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:58.29902 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775925.32598019 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:46:59.918453 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775923.70654655 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:01.61893 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775922.00606966 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:03.260854 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775920.36414599 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:04.900934 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775918.7240665 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:06.695359 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775916.92964053 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:08.400561 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775915.22443891 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:10.101944 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775913.52305627 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:11.812083 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775911.81291723 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:13.52062 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775910.10438037 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:15.222632 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775908.40236783 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:16.910966 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775906.71403408 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:18.606918 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775905.01808167 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:20.343769 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775903.2812314 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:22.082232 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775901.54276848 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:23.883041 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775899.74195862 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:25.620128 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775898.00487185 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:27.35945 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775896.26555014 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:29.130557 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775894.49444318 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:30.923784 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775892.70121574 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:32.727946 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775890.89705372 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:34.531096 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775889.09390402 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:36.306933 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775887.3180666 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:38.166688 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775885.45831227 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:40.002563 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775883.62243652 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:42.484442 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775881.14055848 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:44.021535 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775879.6034646 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:45.631295 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775877.9937048 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:47.254596 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775876.37040377 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:48.821774 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775874.80322599 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:50.420249 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775873.20475149 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:51.987955 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775871.63704515 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:53.605212 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775870.01978803 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:55.20445 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775868.42055035 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:56.788312 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775866.83668756 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:47:58.394125 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775865.23087478 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:00.108402 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775863.51659822 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:01.787908 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775861.83709192 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:03.491932 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775860.13306761 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:05.092427 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775858.53257346 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:06.743543 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775856.88145709 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:08.39161 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775855.23338962 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:10.047309 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775853.57769108 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:11.709644 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775851.9153564 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:13.375551 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775850.24944949 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:15.059476 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775848.56552386 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:16.710106 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775846.91489434 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:18.471808 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775845.15319204 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:20.151023 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775843.47397685 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:21.841102 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775841.78389835 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:23.477741 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775840.14725947 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:25.164037 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775838.46096325 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:26.866212 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775836.75878811 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:28.543676 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775835.08132434 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:30.153607 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775833.47139263 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:31.739485 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775831.88551521 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:33.330291 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775830.29470921 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:34.841913 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775828.78308725 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:36.501554 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775827.12344646 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:38.128424 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775825.49657559 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:39.780441 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775823.84455943 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:41.429154 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775822.19584584 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:43.061905 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775820.56309485 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:44.666964 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775818.95803618 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:46.290377 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775817.33462262 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:47.964361 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775815.66063881 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:49.62856 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775813.9964397 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:51.308621 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775812.31637931 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:52.953362 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775810.67163754 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:54.748101 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775808.876899 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:56.459899 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775807.16510081 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:58.172291 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775805.4527092 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:48:59.880144 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775803.74485588 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:01.575826 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775802.04917431 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:03.266957 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775800.35804296 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:04.98322 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775798.6417799 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:06.695269 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775796.92973065 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:08.411383 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775795.21361732 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:10.114946 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775793.51005411 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:11.953163 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775791.67183685 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:13.726571 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775789.89842868 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:15.480447 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775788.14455318 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:17.262145 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775786.3628552 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:19.034252 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775784.59074831 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:20.851494 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775782.77350593 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:22.68434 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775780.94065952 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:24.54752 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775779.07748032 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:26.407973 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775777.21702695 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:28.215312 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775775.40968847 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:29.988609 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775773.63639069 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:32.408345 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775771.21665502 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:33.982651 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775769.642349 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:35.510601 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775768.11439896 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:37.002694 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775766.62230563 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:38.497959 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775765.12704086 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:40.012032 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775763.61296797 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:41.577129 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775762.04787087 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:43.093976 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775760.53102374 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:44.563538 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775759.06146193 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:46.091639 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775757.53336096 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:47.617852 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775756.00714803 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:49.257064 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775754.36793566 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:50.804974 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775752.82002568 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:52.372201 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775751.25279903 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:53.971896 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775749.65310383 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:55.478973 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775748.14602709 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:57.062521 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775746.5624795 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:49:58.641376 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775744.98362446 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:00.227333 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775743.39766669 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:01.857586 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775741.76741362 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:03.474297 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775740.15070319 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:05.094855 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775738.53014469 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:06.773161 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775736.85183859 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:08.372366 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775735.25263405 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:10.043335 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775733.58166528 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:11.49176 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775732.13323951 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:12.903782 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775730.72121763 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:14.271817 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775729.35318327 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:15.641616 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775727.98338437 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:17.016399 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775726.60860085 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:18.42058 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775725.20441961 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:19.814982 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775723.8100183 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:21.172786 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775722.45221353 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:22.604796 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775721.02020407 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:23.954197 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775719.67080259 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:25.307767 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775718.31723332 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:26.659355 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775716.96564507 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:28.031916 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775715.59308362 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:29.425099 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775714.19990063 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:30.862515 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775712.76248455 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:32.285996 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775711.3390038 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:33.685636 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775709.93936372 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:35.143743 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775708.48125672 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:36.605789 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775707.01921082 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:38.119335 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775705.50566459 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:39.55227 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775704.07273006 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:41.03263 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775702.59236956 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:42.536105 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775701.08889461 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:43.998597 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775699.62640333 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:45.456176 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775698.16882372 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:46.893758 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775696.73124194 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:48.374104 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775695.25089645 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:49.841552 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775693.78344774 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:51.329706 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775692.29529357 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:53.037285 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775690.58771491 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:54.788997 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775688.83600283 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:56.584323 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775687.04067683 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:50:58.395817 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775685.2291832 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:00.150509 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775683.47449112 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:01.942714 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775681.68228626 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:03.710385 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775679.91461468 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:05.377324 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775678.24767566 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:06.983211 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775676.6417892 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:08.566294 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775675.05870628 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:10.192827 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775673.43217349 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:12.299753 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775671.32524729 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:13.633594 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775669.99140644 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:14.976525 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775668.64847493 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:16.335791 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775667.28920913 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:17.688319 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775665.93668056 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:19.064576 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775664.56042361 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:20.446108 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775663.17889166 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:21.80986 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775661.81513977 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-09-04 15:51:23.190722 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775660.43427849 input timeRange: 7776000 | timeMin: 2024-09-04 15:51:24.57752 | timeMax: 2024-12-03 13:45:43.625 | timeDiff: 7775659.04747963 nFacets: 4 nrow dataFiltered(): 2080 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733233537010079000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-04 15:51:42.81439 | timeMax: 2024-12-03 14:51:42.815808 | timeDiff: 5184000.00141764 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1664 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-04 13:51:42.814 | timeMax: 2024-12-03 13:51:42.816 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1664 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 13 rows containing missing values or values outside the scale range (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-05 16:10:21.316585 | timeMax: 2024-12-04 15:10:21.317463 | timeDiff: 5184000.00087881 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-05 14:10:21.317 | timeMax: 2024-12-04 14:10:21.317 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1424 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1424 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). vals$rawrr: TRUE NA p37058/Proteomics/LUMOS_2/analytic_20241202/20241202_C37058_008_autoQC01.raw NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1144 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 396 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 1144 using 'ggh4x' package ... vals$rawrr: TRUE NA p3000/Proteomics/LUMOS_2/roschi_20241203/20241202_011_autoQC03dda.raw p3000/Proteomics/LUMOS_2/roschi_20241203/20241202_011_autoQC03dda.raw vals$rawrr: TRUE p37058/Proteomics/LUMOS_2/analytic_20241202/20241202_C37058_009_autoQC03dia.raw NA p37058/Proteomics/LUMOS_2/analytic_20241202/20241202_C37058_009_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p37058/Proteomics/LUMOS_2/analytic_20241202/20241202_C37058_009_autoQC03dia.raw Reading raw file: /srv/www/htdocs//p37058/Proteomics/LUMOS_2/analytic_20241202/20241202_C37058_009_autoQC03dia.raw Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 194: FUN 193: .isAssemblyWorking 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawrr-autoQC03-plotProfiles 1: runApp NA p37115/Proteomics/LUMOS_2/analytic_20241129/20241129_C37115_007_autoQC03dia.raw NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733321417545128000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-06 08:50:11.385212 | timeMax: 2024-12-05 07:50:11.38668 | timeDiff: 5184000.00146866 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 784 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-06 06:50:11.385 | timeMax: 2024-12-05 06:50:11.387 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 784 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 784 using 'ggh4x' package ... Warning: Removed 46 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 16 rows containing missing values or values outside the scale range (`geom_line()`). Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1732621383606001000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp nrow dataFiltered(): 784 using 'ggh4x' package ... Warning: Removed 92 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 16 rows containing missing values or values outside the scale range (`geom_line()`). Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 247 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 0 nrow dataFiltered(): 0 nrow dataFiltered(): 247 using 'ggh4x' package ... NA p3000/Proteomics/QEXACTIVE_1/analytic_20241114/20241119_C3000_003_autoQC03dda.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_003_autoQC03dda.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_003_autoQC03dda.raw p37105/Proteomics/QEXACTIVE_1/analytic_20241202/20241202_C37105_009_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-06 10:06:53.273091 | timeMax: 2024-12-05 09:06:53.273668 | timeDiff: 5184000.0005765 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1664 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-10-06 08:06:53.273 | timeMax: 2024-12-05 08:06:53.274 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_007_autoQC01.raw NA p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_002_autoQC01.raw NA p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_007_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_007_autoQC01.raw Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1196 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 396 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 1196 using 'ggh4x' package ... p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_008_autoQC03dda.raw NA p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_008_autoQC03dda.raw NA p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_008_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_008_autoQC03dda.raw NA p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_008_autoQC03dda.raw plotClick: NA plotClick: p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_008_autoQC03dda.raw NA plotClick: p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_008_autoQC03dda.raw NA p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_008_autoQC03dda.raw plotClick: NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-06 10:09:08.91666 | timeMax: 2024-12-05 09:09:08.917681 | timeDiff: 5184000.00102043 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-06 08:09:08.917 | timeMax: 2024-12-05 08:09:08.918 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1440 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1664 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). NA p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_007_autoQC01.raw NA p37118/Proteomics/LUMOS_2/analytic_20241204/20241204_C37118_007_autoQC01.raw NA Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1196 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 396 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 1196 using 'ggh4x' package ... NA p37058/Proteomics/LUMOS_2/analytic_20241202/20241202_C37058_009_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p37058/Proteomics/LUMOS_2/analytic_20241202/20241202_C37058_009_autoQC03dia.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733386142754684000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-06 10:12:19.974871 | timeMax: 2024-12-05 09:12:19.976181 | timeDiff: 5184000.00130963 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 208 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 396 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-06 08:12:19.97487 | timeMax: 2024-12-05 08:12:19.97618 | timeDiff: 5184000.00130963 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-06 08:12:19.975 | timeMax: 2024-12-05 08:12:19.976 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733386009780405000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733233896461382000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733386334278887000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-07 11:11:58.152063 | timeMax: 2024-12-06 10:11:58.15297 | timeDiff: 5184000.00090718 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 208 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 396 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-07 09:11:58.15206 | timeMax: 2024-12-06 09:11:58.15297 | timeDiff: 5184000.00091004 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-07 09:11:58.152 | timeMax: 2024-12-06 09:11:58.153 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733476313999306000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-07 16:25:14.66163 | timeMax: 2024-12-06 15:25:14.663798 | timeDiff: 5184000.00216842 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 208 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-07 14:25:14.66163 | timeMax: 2024-12-06 14:25:14.6638 | timeDiff: 5184000.00217009 nFacets: 1 nrow dataFiltered(): 208 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-07 14:25:14.662 | timeMax: 2024-12-06 14:25:14.664 | timeDiff: 5184000.00200009 nFacets: 1 nrow dataFiltered(): 208 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 342 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 832 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 832 using 'ggh4x' package ... Warning: Removed 49 rows containing missing values or values outside the scale range (`geom_point()`). Warning: Removed 19 rows containing missing values or values outside the scale range (`geom_line()`). vals$rawrr: TRUE p3000/Proteomics/QEXACTIVE_1/pgehrig_20241205_gel_bands/20240512_07_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/pgehrig_20241205_gel_bands/20240512_07_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/pgehrig_20241205_gel_bands/20240512_07_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/pgehrig_20241205_gel_bands/20240512_07_autoQC01.raw NA p37165/Proteomics/QEXACTIVE_1/analytic_20241206/20241206_C37165_011_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/pgehrig_20241205_gel_bands/20240512_07_autoQC01.raw Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 194: FUN 193: .isAssemblyWorking 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotProfiles 1: runApp p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 194: FUN 193: .isAssemblyWorking 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotProfiles 1: runApp p37157/Proteomics/QEXACTIVE_1/analytic_20241204/20241204_C37157_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p37157/Proteomics/QEXACTIVE_1/analytic_20241204/20241204_C37157_002_autoQC01.raw Reading raw file: /srv/www/htdocs//p37157/Proteomics/QEXACTIVE_1/analytic_20241204/20241204_C37157_002_autoQC01.raw Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 194: FUN 193: .isAssemblyWorking 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotProfiles 1: runApp p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 194: FUN 193: .isAssemblyWorking 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotProfiles 1: runApp p37105/Proteomics/QEXACTIVE_1/analytic_20241202/20241202_C37105_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p37105/Proteomics/QEXACTIVE_1/analytic_20241202/20241202_C37105_008_autoQC01.raw Reading raw file: /srv/www/htdocs//p37105/Proteomics/QEXACTIVE_1/analytic_20241202/20241202_C37105_008_autoQC01.raw Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 194: FUN 193: .isAssemblyWorking 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-rawrr-autoQC03-plotProfiles 1: runApp p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw p37105/Proteomics/QEXACTIVE_1/analytic_20241202/20241202_C37105_008_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw p37157/Proteomics/QEXACTIVE_1/analytic_20241204/20241204_C37157_002_autoQC01.raw p37070/Proteomics/QEXACTIVE_1/analytic_20241204/20241204_C37070_002_autoQC01.raw p37157/Proteomics/QEXACTIVE_1/analytic_20241204/20241204_C37157_002_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20241203/20241203_C3000_002_autoQC01.raw p37070/Proteomics/QEXACTIVE_1/analytic_20241204/20241204_C37070_002_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/pgehrig_20241205_gel_bands/20240512_01_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/pgehrig_20241205_gel_bands/20240512_01_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/pgehrig_20241205_gel_bands/20240512_07_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/pgehrig_20241205_gel_bands/20240512_07_autoQC01.raw p37165/Proteomics/QEXACTIVE_1/analytic_20241206/20241206_C37165_011_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/pgehrig_20241205_gel_bands/20240512_07_autoQC01.raw Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733495106506245000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-08 08:51:49.998039 | timeMax: 2024-12-07 07:51:49.998611 | timeDiff: 5184000.00057173 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-08 06:51:49.998 | timeMax: 2024-12-07 06:51:49.999 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733554304790569000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-10 09:10:34.555907 | timeMax: 2024-12-09 08:10:34.556486 | timeDiff: 5184000.00057912 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1360 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-10 07:10:34.556 | timeMax: 2024-12-09 07:10:34.556 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Reading /scratch/DIAQC/qc/dump/comet.RData ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733728231062289000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-10 09:39:52.74309 | timeMax: 2024-12-09 08:39:52.743688 | timeDiff: 5184000.00059795 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1360 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-10 07:39:52.743 | timeMax: 2024-12-09 07:39:52.744 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733729989225932000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-10 10:00:29.974468 | timeMax: 2024-12-09 09:00:29.975751 | timeDiff: 5184000.00128317 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 414 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-10 08:00:29.97447 | timeMax: 2024-12-09 08:00:29.97575 | timeDiff: 5184000.00128007 nFacets: 1 nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 414 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-10 08:00:29.974 | timeMax: 2024-12-09 08:00:29.976 | timeDiff: 5184000.00200009 nFacets: 1 nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 414 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... p37153/Proteomics/EXPLORIS_1/analytic_20241205/20241205_C37153_014_autoQC03dda.raw NA p37172/Proteomics/EXPLORIS_1/analytic_20241206/20241205_C37172_009_autoQC03dia.raw nrow dataFiltered(): 221 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 221 using 'ggh4x' package ... p37153/Proteomics/EXPLORIS_1/analytic_20241205/20241205_C37153_014_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-10 10:32:43.165133 | timeMax: 2024-12-09 09:32:43.165722 | timeDiff: 5184000.00058913 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-10 08:32:43.165 | timeMax: 2024-12-09 08:32:43.166 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1360 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1600 using 'ggh4x' package ... Warning: Removed 1 row containing missing values or values outside the scale range (`geom_point()`). p25334/Proteomics/LUMOS_2/dlesli_20241205_DLP253/20241205_021_autoQC01.raw Reading /scratch/DIAQC/qc/dump/comet.RData ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 884 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-plot 1: runApp nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 884 using 'ggh4x' package ... vals$rawrr: TRUE p25334/Proteomics/LUMOS_2/dlesli_20241205_DLP253/20241205_022_autoQC03dda.raw NA p25334/Proteomics/LUMOS_2/dlesli_20241205_DLP253/20241205_022_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p25334/Proteomics/LUMOS_2/dlesli_20241205_DLP253/20241205_022_autoQC03dda.raw Reading raw file: /srv/www/htdocs//p25334/Proteomics/LUMOS_2/dlesli_20241205_DLP253/20241205_022_autoQC03dda.raw Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 194: FUN 193: .isAssemblyWorking 192: rawrr::readChromatogram 191: 189: .func 186: contextFunc 185: env$runWith 178: ctx$run 177: self$.updateValue 175: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawrr-autoQC03-plotChromatograms 1: runApp Read 22032 items Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 174: 173: stop 172: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawrr-autoQC03-plotTools 1: runApp Warning: Error in .isAssemblyWorking: 'rawrr.exe' not found. Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'. 171: 170: stop 169: peptideProfile 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawrr-autoQC03-plotProfiles 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733733159646632000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-10 10:42:31.56359 | timeMax: 2024-12-09 09:42:31.564171 | timeDiff: 5184000.00058103 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1360 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-10-10 08:42:31.564 | timeMax: 2024-12-09 08:42:31.564 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733733748063027000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733731221325154000.json': Permission denied Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ... nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-10-10 14:31:51.82285 | timeMax: 2024-12-09 13:31:51.824846 | timeDiff: 5184000.00199604 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-10-10 12:31:51.823 | timeMax: 2024-12-09 12:31:51.825 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 1344 Warning: Error in .ggplot: !is.null(variables) is not TRUE 173: 172: stop 171: stopifnot 170: .ggplot 169: ggplot2FUN 168: renderPlot 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$__autoQC01__-plot 1: runApp nrow dataFiltered(): 1344 using 'ggh4x' package ...