Listening on http://127.0.0.1:39809

Attaching package: 'shinydashboard'

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Loading required package: ggnewscale
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
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Warning: Error in if: argument is of length zero
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input timeRange: 7776000 | timeMin: 2024-10-12 10:20:10.428313 | timeMax: 2024-12-11 09:20:10.429262 | timeDiff: 5184000.00094914
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

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nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1280
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nrow dataFiltered(): 1280
Loading required package: ggh4x
Loading required package: ggplot2

Attaching package: 'ggh4x'

The following object is masked from 'package:ggplot2':

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using 'ggh4x' package ...
Warning: Removed 17 rows containing missing values or values outside the scale
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input timeRange: 7776000 | timeMin: 2024-10-12 08:20:10.428 | timeMax: 2024-12-11 08:20:10.429 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1280
using 'ggh4x' package ...
Warning: Removed 17 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 520
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 216
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 216
using 'ggh4x' package ...
nrow dataFiltered(): 520
using 'ggh4x' package ...
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p37183/Proteomics/FUSION_2/loesle_20241209/20241209_004_autoQC03dia.raw
NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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input timeRange: 7776000 | timeMin: 2024-10-12 16:26:17.882504 | timeMax: 2024-12-11 15:26:17.883152 | timeDiff: 5184000.00064802
nFacets: 4
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Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733927174008700000.json': Permission denied
Warning: Error in file: cannot open the connection
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  29: callback
   1: runApp
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 10:37:58.60201 | timeMax: 2024-12-12 09:37:58.602817 | timeDiff: 5184000.00080729
nFacets: 4
Warning: Error in if: argument is of length zero
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nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1616
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-13 08:37:58.602 | timeMax: 2024-12-12 08:37:58.603 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1616
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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nrow dataFiltered(): 1616
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
p25334/Proteomics/LUMOS_2/dlesli_20241114_DLP252/20241114_005_autoQC01.raw
NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 832
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 342
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 342
using 'ggh4x' package ...
nrow dataFiltered(): 832
using 'ggh4x' package ...
NA
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733992673995936000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
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  29: callback
   1: runApp
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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input timeRange: 7776000 | timeMin: 2024-10-13 11:04:24.276712 | timeMax: 2024-12-12 10:04:24.277294 | timeDiff: 5184000.00058222
nFacets: 4
Warning: Error in if: argument is of length zero
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nFacets: 4
vals$rawrr: FALSE
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nrow dataFiltered(): 784
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    1: runApp
nrow dataFiltered(): 784
using 'ggh4x' package ...
Warning: Removed 47 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 12 rows containing missing values or values outside the scale
range (`geom_line()`).
input timeRange: 7776000 | timeMin: 2024-10-13 09:04:24.277 | timeMax: 2024-12-12 09:04:24.277 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 784
using 'ggh4x' package ...
Warning: Removed 47 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 12 rows containing missing values or values outside the scale
range (`geom_line()`).
NA
p37253/Proteomics/QEXACTIVE_1/analytic_20241211/20241211_C37253_006_autoQC01.raw
NA
p37253/Proteomics/QEXACTIVE_1/analytic_20241211/20241211_C37253_001_autoQC01.raw
NA
p37253/Proteomics/QEXACTIVE_1/analytic_20241211/20241211_C37253_001_autoQC01.raw
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 286
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 0
nrow dataFiltered(): 0
nrow dataFiltered(): 286
using 'ggh4x' package ...
NA
p37253/Proteomics/QEXACTIVE_1/analytic_20241211/20241211_C37253_007_autoQC03dda.raw
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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input timeRange: 7776000 | timeMin: 2024-10-14 08:47:39.367558 | timeMax: 2024-12-13 07:47:39.368496 | timeDiff: 5184000.00093818
nFacets: 4
Warning: Error in if: argument is of length zero
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nFacets: 4
input timeRange: 7776000 | timeMin: 2024-10-14 06:47:39.368 | timeMax: 2024-12-13 06:47:39.369 | timeDiff: 5184000.00099993
nFacets: 4
vals$rawrr: FALSE
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nrow dataFiltered(): 832
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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    1: runApp
nrow dataFiltered(): 832
using 'ggh4x' package ...
Warning: Removed 50 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 15 rows containing missing values or values outside the scale
range (`geom_line()`).
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733994260643807000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
NA
p37279/Proteomics/QEXACTIVE_1/analytic_20241212/20241212_C37279_008_autoQC01.raw
p37279/Proteomics/QEXACTIVE_1/analytic_20241212/20241212_C37279_008_autoQC01.raw
p37280/Proteomics/QEXACTIVE_1/analytic_20241212/20241212_C37280_010_autoQC01.raw
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 286
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 0
nrow dataFiltered(): 0
nrow dataFiltered(): 286
using 'ggh4x' package ...
NA
p37253/Proteomics/QEXACTIVE_1/analytic_20241211/20241211_C37253_007_autoQC03dda.raw
fn has changed to NA
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-14 09:17:32.882953 | timeMax: 2024-12-13 08:17:32.883673 | timeDiff: 5184000.00071979
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1408
Warning: Error in .ggplot: !is.null(variables) is not TRUE
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  169: ggplot2FUN
  168: renderPlot
  166: func
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   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1408
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-14 07:17:32.883 | timeMax: 2024-12-13 07:17:32.884 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1408
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734074248763374000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-14 16:30:54.316909 | timeMax: 2024-12-13 15:30:54.31756 | timeDiff: 5184000.00065088
nFacets: 4
Warning: Error in if: argument is of length zero
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   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1424
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  169: ggplot2FUN
  168: renderPlot
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    1: runApp
nrow dataFiltered(): 1424
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-14 14:30:54.317 | timeMax: 2024-12-13 14:30:54.318 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1424
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734100246945210000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
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Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
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  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-17 10:38:02.644491 | timeMax: 2024-12-16 09:38:02.645066 | timeDiff: 5184000.00057483
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
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  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1456
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
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   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1456
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-17 08:38:02.644 | timeMax: 2024-12-16 08:38:02.645 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1456
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 1728
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
p3000/Proteomics/LUMOS_2/pgehrig_20241213_2PCA_gel/20241213_09_autoQC01.raw
NA
p3000/Proteomics/LUMOS_2/pgehrig_20241213_2PCA_gel/20241213_09_autoQC01.raw
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 780
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 324
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
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  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 324
using 'ggh4x' package ...
nrow dataFiltered(): 780
using 'ggh4x' package ...
vals$rawrr: TRUE
NA
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_003_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_003_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_003_autoQC03dda.raw
NA
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734338279039380000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-17 10:42:17.636349 | timeMax: 2024-12-16 09:42:17.636927 | timeDiff: 5184000.00057769
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 208
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 306
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 306
using 'ggh4x' package ...
nrow dataFiltered(): 208
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-17 08:42:17.63635 | timeMax: 2024-12-16 08:42:17.63693 | timeDiff: 5184000.00057983
nFacets: 1
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 306
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-17 08:42:17.636 | timeMax: 2024-12-16 08:42:17.637 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 208
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 306
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 780
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 324
using 'ggh4x' package ...
NA
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
NA
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
plotClick: 
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
plotClick: 
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
vals$rawrr: TRUE
Reading raw file: /srv/www/htdocs//p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
Plotting chromatograms ...
Read 22032 items
NA
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
NA
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734338534040381000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-17 10:48:42.871769 | timeMax: 2024-12-16 09:48:42.872358 | timeDiff: 5184000.00058913
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 468
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 198
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 198
using 'ggh4x' package ...
nrow dataFiltered(): 468
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-17 08:48:42.87177 | timeMax: 2024-12-16 08:48:42.87236 | timeDiff: 5184000.00059009
nFacets: 4
nrow dataFiltered(): 468
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 198
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-17 08:48:42.872 | timeMax: 2024-12-16 08:48:42.872 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 468
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 198
using 'ggh4x' package ...
NA
p37183/Proteomics/FUSION_2/loesle_20241209/20241209_004_autoQC03dia.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1733905204943258000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
nFacets: 4
nrow dataFiltered(): 780
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 324
using 'ggh4x' package ...
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734338919377386000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-17 10:49:57.813757 | timeMax: 2024-12-16 09:49:57.814339 | timeDiff: 5184000.00058174
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1248
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1248
using 'ggh4x' package ...
Warning: Removed 17 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-10-17 08:49:57.814 | timeMax: 2024-12-16 08:49:57.814 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1248
using 'ggh4x' package ...
Warning: Removed 17 rows containing missing values or values outside the scale
range (`geom_point()`).
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 468
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 198
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 198
using 'ggh4x' package ...
nrow dataFiltered(): 468
using 'ggh4x' package ...
p37175/Proteomics/FUSION_2/cmirov_20241206/20241206_015_autoQC03dda.raw
NA
p37175/Proteomics/FUSION_2/cmirov_20241206/20241206_015_autoQC03dda.raw
NA
p37175/Proteomics/FUSION_2/cmirov_20241206/20241206_015_autoQC03dda.raw
NA
nFacets: 4
nrow dataFiltered(): 780
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 324
using 'ggh4x' package ...
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
nFacets: 4
nrow dataFiltered(): 468
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 198
using 'ggh4x' package ...
NA
p37175/Proteomics/FUSION_2/cmirov_20241206/20241206_015_autoQC03dda.raw
NA
p37175/Proteomics/FUSION_2/cmirov_20241206/20241206_015_autoQC03dda.raw
p37175/Proteomics/FUSION_2/cmirov_20241206/20241206_015_autoQC03dda.raw
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
input timeRange: 1209600 | timeMin: 2024-12-09 10:13:33.757448 | timeMax: 2024-12-16 10:13:33.757491 | timeDiff: 604800.000043392
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734340413752124000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-17 11:13:44.450909 | timeMax: 2024-12-16 10:13:44.451491 | timeDiff: 5184000.00058222
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1456
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1456
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-17 09:13:44.451 | timeMax: 2024-12-16 09:13:44.451 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1456
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 1792
using 'ggh4x' package ...
Warning: Removed 14 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 378
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 378
using 'ggh4x' package ...
nrow dataFiltered(): 234
using 'ggh4x' package ...
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
NA
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734340420909711000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-17 17:36:44.082814 | timeMax: 2024-12-16 16:36:44.0839 | timeDiff: 5184000.00108624
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-17 17:36:49.882392 | timeMax: 2024-12-16 16:36:49.883487 | timeDiff: 5184000.00109553
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-17 15:36:44.08281 | timeMax: 2024-12-16 15:36:44.0839 | timeDiff: 5184000.00108981
nFacets: 4
nFacets: 1
nFacets: 4
input timeRange: 7776000 | timeMin: 2024-10-17 15:36:44.083 | timeMax: 2024-12-16 15:36:44.084 | timeDiff: 5184000.00100017
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1280
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1280
using 'ggh4x' package ...
Warning: Removed 17 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-10-17 15:36:49.882 | timeMax: 2024-12-16 15:36:49.883 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1280
using 'ggh4x' package ...
Warning: Removed 17 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734338994052308000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734363396821997000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 468
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 216
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 216
using 'ggh4x' package ...
nrow dataFiltered(): 468
using 'ggh4x' package ...
p3000/Proteomics/FUSION_2/chiawei_20241216/20241216_003_autoQC03dia.raw
nFacets: 4
nrow dataFiltered(): 780
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 324
using 'ggh4x' package ...
NA
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-17 17:42:01.752266 | timeMax: 2024-12-16 16:42:01.752851 | timeDiff: 5184000.00058508
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 378
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 378
using 'ggh4x' package ...
nrow dataFiltered(): 234
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-17 15:42:01.75227 | timeMax: 2024-12-16 15:42:01.75285 | timeDiff: 5184000.00058007
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 378
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-17 15:42:01.752 | timeMax: 2024-12-16 15:42:01.753 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 378
using 'ggh4x' package ...
plotClick: 
fn has changed to /srv/www/htdocs//NA
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
NA
p37172/Proteomics/EXPLORIS_1/analytic_20241206/20241205_C37172_009_autoQC03dia.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734363718270302000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
input timeRange: 1209600 | timeMin: 2024-12-10 09:02:18.652626 | timeMax: 2024-12-17 09:02:18.65266 | timeDiff: 604800.000034094
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734422538648481000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-18 10:02:37.245485 | timeMax: 2024-12-17 09:02:37.246058 | timeDiff: 5184000.0005734
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1776
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 14 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-10-18 08:02:37.245 | timeMax: 2024-12-17 08:02:37.246 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 14 rows containing missing values or values outside the scale
range (`geom_point()`).
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 396
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 234
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734422553786766000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-18 11:20:17.929781 | timeMax: 2024-12-17 10:20:17.930358 | timeDiff: 5184000.00057673
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
input timeRange: 7776000 | timeMin: 2024-10-18 09:20:17.92978 | timeMax: 2024-12-17 09:20:17.93036 | timeDiff: 5184000.00058007
autoQC01 module APEX wide nrow: 286044
autoQC01 module APEX long nrow: 0
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
autoQC01 module APEX long nrow: 1104
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 6 rows containing missing values or values outside the scale
range (`geom_point()`).
autoQC01 module APEX long nrow: 1284
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 18 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 2 rows containing missing values or values outside the scale
range (`geom_line()`).
NA
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1712
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-10-18 09:20:17.93 | timeMax: 2024-12-17 09:20:17.93 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
vals$rawrr: TRUE
p37277/Proteomics/LUMOS_2/analytic_20241216/20241216_C37277_004_autoQC01.raw
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 780
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 324
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 324
using 'ggh4x' package ...
nrow dataFiltered(): 780
using 'ggh4x' package ...
vals$rawrr: TRUE
vals$rawrr: TRUE
NA
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//NA
Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734427214452554000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-18 11:54:25.362262 | timeMax: 2024-12-17 10:54:25.362846 | timeDiff: 5184000.0005846
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 780
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 324
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 324
using 'ggh4x' package ...
nrow dataFiltered(): 780
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-18 09:54:25.36226 | timeMax: 2024-12-17 09:54:25.36285 | timeDiff: 5184000.00059009
nFacets: 4
nrow dataFiltered(): 780
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 324
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-18 09:54:25.362 | timeMax: 2024-12-17 09:54:25.363 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 780
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 324
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 468
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 216
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734363404997300000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-18 12:20:55.310007 | timeMax: 2024-12-17 11:20:55.310591 | timeDiff: 5184000.00058317
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 396
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 234
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-18 10:20:55.31001 | timeMax: 2024-12-17 10:20:55.31059 | timeDiff: 5184000.00058007
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-18 10:20:55.31 | timeMax: 2024-12-17 10:20:55.311 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
NA
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_004_autoQC03dia.raw
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241209/20241209_003_autoQC03dda.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734430851823093000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734429261891456000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-19 10:06:30.262834 | timeMax: 2024-12-18 09:06:30.263426 | timeDiff: 5184000.00059152
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1440
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1440
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-19 08:06:30.263 | timeMax: 2024-12-18 08:06:30.263 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1440
using 'ggh4x' package ...
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
p37142/Proteomics/EXPLORIS_2/lkunz_20241213_prot/20241213_040_C37142_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p37142/Proteomics/EXPLORIS_2/lkunz_20241213_prot/20241213_040_C37142_autoQC01.raw
nFacets: 4
nrow dataFiltered(): 1664
using 'ggh4x' package ...
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 1 row containing missing values or values outside the scale
range (`geom_line()`).
p3000/Proteomics/LUMOS_2/pgehrig_20241213_2PCA_gel/20241217_11_autoQC01.raw
p3000/Proteomics/LUMOS_2/pgehrig_20241213_2PCA_gel/20241217_11_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/pgehrig_20241213_2PCA_gel/20241217_11_autoQC01.raw
nFacets: 4
nrow dataFiltered(): 780
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nFacets: 1
nrow dataFiltered(): 324
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 324
using 'ggh4x' package ...
nrow dataFiltered(): 780
using 'ggh4x' package ...
NA
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
NA
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
NA
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
NA
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
NA
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734509186786657000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning: Error in if: missing value where TRUE/FALSE needed
  1: runApp
input timeRange: 1209600 | timeMin: 2024-12-11 10:08:50.968997 | timeMax: 2024-12-18 10:08:50.96904 | timeDiff: 604800.000043392
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734512930963681000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734072455489883000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-19 11:10:38.762504 | timeMax: 2024-12-18 10:10:38.763086 | timeDiff: 5184000.0005827
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 816
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 816
using 'ggh4x' package ...
Warning: Removed 49 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 14 rows containing missing values or values outside the scale
range (`geom_line()`).
input timeRange: 7776000 | timeMin: 2024-10-19 09:10:38.763 | timeMax: 2024-12-18 09:10:38.763 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 816
using 'ggh4x' package ...
Warning: Removed 49 rows containing missing values or values outside the scale
range (`geom_point()`).
Warning: Removed 14 rows containing missing values or values outside the scale
range (`geom_line()`).
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-19 12:02:35.701673 | timeMax: 2024-12-18 11:02:35.702263 | timeDiff: 5184000.00058985
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1712
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-10-19 10:02:35.702 | timeMax: 2024-12-18 10:02:35.702 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
vals$rawrr: TRUE
vals$rawDiag: TRUE
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//NA
Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
NA
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
plotChargeState
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
reading index for 20241216_002a_autoQC01.raw...

reading index for 20241216_002a_autoQC01.raw...

p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-19 12:04:31.853229 | timeMax: 2024-12-18 11:04:31.853861 | timeDiff: 5184000.00063229
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 247
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 0
nrow dataFiltered(): 0
nrow dataFiltered(): 247
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-19 10:04:31.85323 | timeMax: 2024-12-18 10:04:31.85386 | timeDiff: 5184000.00063014
nFacets: 1
nrow dataFiltered(): 247
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 0
input timeRange: 7776000 | timeMin: 2024-10-19 10:04:31.853 | timeMax: 2024-12-18 10:04:31.854 | timeDiff: 5184000.00100017
nFacets: 1
nrow dataFiltered(): 247
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 0
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734513035286703000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-19 12:39:14.106735 | timeMax: 2024-12-18 11:39:14.107388 | timeDiff: 5184000.00065303
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1712
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-10-19 10:39:14.107 | timeMax: 2024-12-18 10:39:14.107 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734516152142447000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
plotClick: 
vals$rawrr: TRUE
Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 26 rows containing missing values or values outside the scale
range (`geom_point()`).
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
nrow dataFiltered(): 1712
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
plotClick: 
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p37036/Proteomics/EXPLORIS_1/sschuerch_20241129/20241129_006_autoQC01.raw
NA
input timeRange: 15552000 | timeMin: 2024-10-19 10:39:14.107 | timeMax: 2024-12-18 11:48:17.344493 | timeDiff: 5184543.23749256
nFacets: 4
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-10-19 10:39:14.107 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 5184543.23699999
nFacets: 4
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:18.72901 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551998.61499
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:24.676007 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551992.6679931
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:24.676 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551992.668
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:26.644389 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551990.6996112
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:26.644 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551990.7
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:28.61299 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551988.73101
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:28.613 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551988.7310002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:30.679774 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551986.6642258
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:30.68 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551986.664
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:32.613835 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551984.7301655
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:32.614 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551984.73
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:34.589691 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551982.7543094
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:34.59 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551982.7540002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:36.569935 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551980.7740655
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:36.57 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551980.7740002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:38.564898 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551978.7791018
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:38.565 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551978.779
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:40.547198 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551976.796802
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:40.547 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551976.7970002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:42.523963 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551974.8200374
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:42.524 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551974.8200002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:44.553559 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551972.790441
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:44.554 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551972.7900002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:46.582038 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551970.7619617
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:46.582 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551970.7620001
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:48.599143 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551968.7448575
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:48.599 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551968.7450001
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:50.616232 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551966.7277679
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:50.616 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551966.7280002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:52.569383 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551964.774617
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:52.569 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551964.7750001
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:54.546644 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551962.7973557
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:54.547 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551962.7970002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:56.565241 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551960.7787588
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:56.565 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551960.779
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:48:58.5347 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551958.8093002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:48:58.535 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551958.809
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:00.501771 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551956.8422287
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:00.502 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551956.842
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:02.597723 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551954.7462769
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:02.598 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551954.7460001
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:04.622694 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551952.7213063
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:04.623 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551952.7210002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:06.609974 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551950.7340262
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:06.61 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551950.7340002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:08.73456 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551948.6094398
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:08.735 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551948.6090002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:10.772834 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551946.5711665
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:10.773 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551946.5710001
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:12.821334 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551944.5226662
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:12.821 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551944.523
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:14.876418 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551942.4675822
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:14.876 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551942.4680002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:16.95066 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551940.3933401
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:16.951 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551940.3930001
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:18.996168 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551938.3478322
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:18.996 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551938.348
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:21.930141 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551935.4138594
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:21.93 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551935.414
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:24.033256 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551933.3107438
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:24.033 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551933.3110001
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:26.09766 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551931.2463403
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:26.098 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551931.2460001
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:28.169307 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551929.1746933
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:28.169 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551929.1750002
nFacets: 4
nrow dataFiltered(): 4256
using 'ggh4x' package ...
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 15552000 | timeMin: 2024-06-21 12:49:30.247166 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551927.0968344
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 715
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 738
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 738
using 'ggh4x' package ...
nrow dataFiltered(): 715
using 'ggh4x' package ...
input timeRange: 15552000 | timeMin: 2024-06-21 10:49:30.24717 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15551927.0968301
nFacets: 1
nrow dataFiltered(): 715
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 738
using 'ggh4x' package ...
input timeRange: 15552000 | timeMin: 2024-06-21 13:49:31.442883 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15548325.9011173
nFacets: 1
nrow dataFiltered(): 715
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 738
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 715
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 738
using 'ggh4x' package ...
input timeRange: 15552000 | timeMin: 2024-06-21 13:49:32.516964 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15548324.8270364
nFacets: 1
nrow dataFiltered(): 715
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 738
using 'ggh4x' package ...
input timeRange: 15552000 | timeMin: 2024-06-21 11:49:32.517 | timeMax: 2024-12-18 10:48:17.344 | timeDiff: 15548324.8270001
nFacets: 1
nrow dataFiltered(): 715
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 738
using 'ggh4x' package ...
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734518350599102000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-19 17:39:14.970355 | timeMax: 2024-12-18 16:39:14.97096 | timeDiff: 5184000.00060511
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1696
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
input timeRange: 7776000 | timeMin: 2024-10-19 15:39:14.97 | timeMax: 2024-12-18 15:39:14.971 | timeDiff: 5184000.00099993
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 396
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 234
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 1696
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
autoQC01 module APEX wide nrow: 286066
autoQC01 module APEX long nrow: 0
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
autoQC01 module APEX long nrow: 1272
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 20 rows containing missing values or values outside the scale
range (`geom_point()`).
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-19 17:51:56.871784 | timeMax: 2024-12-18 16:51:56.872369 | timeDiff: 5184000.00058413
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1440
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1440
using 'ggh4x' package ...
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
input timeRange: 7776000 | timeMin: 2024-10-19 15:51:56.872 | timeMax: 2024-12-18 15:51:56.872 | timeDiff: 5184000
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 182
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 306
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 306
using 'ggh4x' package ...
nrow dataFiltered(): 182
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 780
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 324
using 'ggh4x' package ...
p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/cfortes_20241209_autoQC/20241209_004_autoQC03dia.raw
plotClick: 
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
NA
p37270/Proteomics/LUMOS_2/analytic_20241211/20241211_C37270_008_autoQC03dda.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734537113162541000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-19 19:14:51.970001 | timeMax: 2024-12-18 18:14:51.970584 | timeDiff: 5184000.00058317
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1696
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1696
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-10-19 17:14:51.97 | timeMax: 2024-12-18 17:14:51.971 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1696
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
NA
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734536351531173000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241216/20241216_002a_autoQC01.raw
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-20 10:17:46.219876 | timeMax: 2024-12-19 09:17:46.22046 | timeDiff: 5184000.00058389
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1680
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1680
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-10-20 08:17:46.22 | timeMax: 2024-12-19 08:17:46.22 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1680
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 234
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 396
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 234
using 'ggh4x' package ...
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734542088480505000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734596262700863000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-21 11:36:53.734089 | timeMax: 2024-12-20 10:36:53.734665 | timeDiff: 5184000.0005765
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1488
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1488
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-21 09:36:53.734 | timeMax: 2024-12-20 09:36:53.735 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1488
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734687410209961000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-21 16:44:41.257109 | timeMax: 2024-12-20 15:44:41.257712 | timeDiff: 5184000.00060225
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 396
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-21 14:44:41.25711 | timeMax: 2024-12-20 14:44:41.25771 | timeDiff: 5184000.00059986
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-21 14:44:41.257 | timeMax: 2024-12-20 14:44:41.258 | timeDiff: 5184000.00099993
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
NA
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
NA
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
NA
nrow dataFiltered(): 221
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 221
using 'ggh4x' package ...
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
p3000/Proteomics/EXPLORIS_1/antdit_20241209/20241209_003_autoQC03dda.raw
NA
input timeRange: 7776000 | timeMin: 2024-10-21 14:44:41.257 | timeMax: 2024-12-20 14:44:42.75153 | timeDiff: 5184001.49452996
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
nrow dataFiltered(): 221
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-10-21 14:44:41.257 | timeMax: 2024-12-20 14:44:42.752 | timeDiff: 5184001.49500012
nFacets: 1
nrow dataFiltered(): 221
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 396
using 'ggh4x' package ...
p37142/Proteomics/EXPLORIS_1/analytic_20241209/20241209_C37142_008_autoQC03dda.raw
NA
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1734705877750524000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-10-31 11:40:30.637596 | timeMax: 2024-12-30 11:40:30.638175 | timeDiff: 5184000.0005784
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1280
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
input timeRange: 7776000 | timeMin: 2024-10-31 10:40:30.638 | timeMax: 2024-12-30 10:40:30.638 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1280
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1280
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1735555227149978000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-04 09:06:38.306347 | timeMax: 2025-01-03 09:06:38.306927 | timeDiff: 5184000.00058007
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1168
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1168
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-11-04 08:06:38.306 | timeMax: 2025-01-03 08:06:38.307 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1168
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1735891594790435000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-04 10:37:33.500947 | timeMax: 2025-01-03 10:37:33.501536 | timeDiff: 5184000.00058913
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Reading /scratch/DIAQC/qc/dump/comet.RData ...
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 312
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
nrow dataFiltered(): 180
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC03-DIA-plot
    1: runApp
nrow dataFiltered(): 180
using 'ggh4x' package ...
nrow dataFiltered(): 312
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-11-04 09:37:33.50095 | timeMax: 2025-01-03 09:37:33.50154 | timeDiff: 5184000.00059009
nFacets: 4
nrow dataFiltered(): 312
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 180
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-11-04 09:37:33.501 | timeMax: 2025-01-03 09:37:33.502 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 312
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 180
using 'ggh4x' package ...
NA
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1120
Warning: Error in .ggplot: !is.null(variables) is not TRUE
  173: <Anonymous>
  172: stop
  171: stopifnot
  170: .ggplot
  169: ggplot2FUN
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-plot
    1: runApp
nrow dataFiltered(): 1120
using 'ggh4x' package ...
Warning: Removed 15 rows containing missing values or values outside the scale
range (`geom_point()`).
NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
Reading /scratch/DIAQC/qc/dump/autoQC01-fit-apex-auc-fwhm.txt ...
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-11-04 14:20:12.288044 | timeMax: 2025-01-03 14:20:12.28862 | timeDiff: 5184000.00057602
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1735910408732483000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp