Listening on http://127.0.0.1:32805 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 08:44:05.083426 | timeMax: 2024-01-18 08:44:05.084354 | timeDiff: 5184000.00092769 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 612 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-19 07:44:05.08343 | timeMax: 2024-01-18 07:44:05.08435 | timeDiff: 5184000.0009203 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 612 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-19 07:44:05.083 | timeMax: 2024-01-18 07:44:05.084 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 612 using 'ggh4x' package ... NA NA p33383/Proteomics/TIMSTOF_1/spfammatter_20240116/zip/20240116_027_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/spfammatter_20240116/zip/20240116_027_autoQC03dia.d.zip NA Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 09:24:40.831797 | timeMax: 2024-01-18 09:24:40.832722 | timeDiff: 5184000.00092483 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 08:24:40.832 | timeMax: 2024-01-18 08:24:40.833 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705566276425045000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 09:27:05.661037 | timeMax: 2024-01-18 09:27:05.661618 | timeDiff: 5184000.0005815 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 08:27:05.661 | timeMax: 2024-01-18 08:27:05.662 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705566422199640000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 10:47:09.299268 | timeMax: 2024-01-18 10:47:09.300088 | timeDiff: 5184000.00081944 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 09:47:09.299 | timeMax: 2024-01-18 09:47:09.3 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... NA NA vals$rawDiag: TRUE vals$rawrr: TRUE p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw plotChargeState Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20231211/20231211_004_autoQC03dia.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DIA-rawDiag-autoQC03-plot 1: runApp reading index for 20231211_004_autoQC03dia.raw... NA input timeRange: 189216000 | timeMin: 2023-11-19 09:47:09.299 | timeMax: 2024-01-18 10:50:17.686185 | timeDiff: 5184188.3871851 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE input timeRange: 189216000 | timeMin: 2023-11-19 09:47:09.299 | timeMax: 2024-01-18 09:50:17.686 | timeDiff: 5184188.38700008 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE input timeRange: 189216000 | timeMin: 2018-05-16 09:50:20.576 | timeMax: 2024-01-18 09:50:17.686 | timeDiff: 179107197.11 nFacets: 1 nrow dataFiltered(): 6136 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: TRUE vals$rawDiag: TRUE vals$rawrr: TRUE vals$rawDiag: TRUE nFacets: 4 nrow dataFiltered(): 34752 using 'ggh4x' package ... Warning: Removed 619 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). p24560/Proteomics/QEXACTIVE_1/analytic_20210407/20210407_C24560_001_autoQC01.raw p24452/Proteomics/QEXACTIVE_1/analytic_20210330/20210330_C24452_025_autoQC01.raw p24484/Proteomics/QEXACTIVE_1/analytic_20210325/20210325_C24484_021_autoQC01.raw p24406/Proteomics/QEXACTIVE_1/analytic_20210319/20210319_C24406_001_autoQC01_20210319121220.raw nrow dataFiltered(): 34752 using 'ggh4x' package ... Warning: Removed 1238 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nrow dataFiltered(): 34752 using 'ggh4x' package ... Warning: Removed 619 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). input timeRange: 189216000 | timeMin: 2019-03-06 09:50:30.86 | timeMax: 2024-01-18 09:50:17.686 | timeDiff: 153705586.826 nFacets: 4 nrow dataFiltered(): 34704 using 'ggh4x' package ... Warning: Removed 619 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nrow dataFiltered(): 34704 using 'ggh4x' package ... Warning: Removed 619 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). p23303/Proteomics/QEXACTIVE_1/analytic_20201117/20201117_C23303_004_autoQC01.raw NA nrow dataFiltered(): 34704 using 'ggh4x' package ... Warning: Removed 1238 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nrow dataFiltered(): 34704 using 'ggh4x' package ... Warning: Removed 619 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). p29237/Proteomics/QEXACTIVE_1/analytic_20220819/20220819_C29237_001_autoQC01.raw p29245/Proteomics/QEXACTIVE_1/analytic_20220816/20220816_C29245_004_autoQC01.raw NA p29243/Proteomics/QEXACTIVE_1/analytic_20220816/20220816_C29243_004_autoQC01.raw NA nFacets: 1 nrow dataFiltered(): 6136 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 10:58:08.632597 | timeMax: 2024-01-18 10:58:08.633503 | timeDiff: 5184000.00090623 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 09:58:08.633 | timeMax: 2024-01-18 09:58:08.634 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 10:58:14.51272 | timeMax: 2024-01-18 10:58:14.5137 | timeDiff: 5184000.00098014 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 09:58:14.513 | timeMax: 2024-01-18 09:58:14.514 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705563840579475000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705571884418528000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705571225314902000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 13:16:29.676234 | timeMax: 2024-01-18 13:16:29.677111 | timeDiff: 5184000.00087714 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-19 12:16:29.67623 | timeMax: 2024-01-18 12:16:29.67711 | timeDiff: 5184000.00088024 nFacets: 4 nFacets: 1 input timeRange: 7776000 | timeMin: 2023-11-19 12:16:29.676 | timeMax: 2024-01-18 12:16:29.677 | timeDiff: 5184000.00099993 nFacets: 4 nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 676 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 612 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/spfammatter_20240116/zip/20240116_027_autoQC03dia.d.zip p33383/Proteomics/TIMSTOF_1/spfammatter_20240116/zip/20240116_027_autoQC03dia.d.zip NA p33383/Proteomics/TIMSTOF_1/spfammatter_20240116/zip/20240116_027_autoQC03dia.d.zip plotClick: NA p33383/Proteomics/TIMSTOF_1/spfammatter_20240116/zip/20240116_027_autoQC03dia.d.zip Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705571891031315000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 15:05:59.920017 | timeMax: 2024-01-18 15:05:59.920583 | timeDiff: 5184000.00056553 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-19 14:05:59.92002 | timeMax: 2024-01-18 14:05:59.92058 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-19 14:05:59.92 | timeMax: 2024-01-18 14:05:59.921 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 612 using 'ggh4x' package ... p33383/Proteomics/TIMSTOF_1/spfammatter_20240116/zip/20240116_027_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/spfammatter_20240116/zip/20240116_027_autoQC03dia.d.zip Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 15:11:10.685903 | timeMax: 2024-01-18 15:11:10.686487 | timeDiff: 5184000.00058365 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-19 14:11:10.6859 | timeMax: 2024-01-18 14:11:10.68649 | timeDiff: 5184000.00059009 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-19 14:11:10.686 | timeMax: 2024-01-18 14:11:10.686 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705586756903458000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 15:15:28.017944 | timeMax: 2024-01-18 15:15:28.018511 | timeDiff: 5184000.00056624 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 14:15:28.018 | timeMax: 2024-01-18 14:15:28.019 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 23 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). NA autoQC01 module APEX wide nrow: 257576 autoQC01 module APEX long nrow: 780 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 44 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 273 using 'ggh4x' package ... p33961/Proteomics/QEXACTIVE_1/analytic_20240115/20240115_C33961_005_autoQC03dda.raw NA p33933/Proteomics/QEXACTIVE_1/analytic_20240112/20240112_C33933_007_autoQC03dda.raw p33876/Proteomics/QEXACTIVE_1/analytic_20240105/20240105_C33876_011_autoQC03dda.raw p33960/Proteomics/QEXACTIVE_1/analytic_20240116/20240116_C33960_005_autoQC03dda.raw NA p33960/Proteomics/QEXACTIVE_1/analytic_20240116/20240116_C33960_005_autoQC03dda.raw NA Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 15:43:00.79568 | timeMax: 2024-01-18 15:43:00.796257 | timeDiff: 5184000.00057721 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-19 14:43:00.79568 | timeMax: 2024-01-18 14:43:00.79626 | timeDiff: 5184000.00058007 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 612 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-19 14:43:00.796 | timeMax: 2024-01-18 14:43:00.796 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 612 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705588977717732000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:04:29.679614 | timeMax: 2024-01-18 16:04:29.680189 | timeDiff: 5184000.0005753 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 15:04:29.68 | timeMax: 2024-01-18 15:04:29.68 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:09:10.066352 | timeMax: 2024-01-18 16:09:10.066924 | timeDiff: 5184000.00057197 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-19 15:09:10.06635 | timeMax: 2024-01-18 15:09:10.06692 | timeDiff: 5184000.00056982 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-19 15:09:10.066 | timeMax: 2024-01-18 15:09:10.067 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 612 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705587067662707000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705590266691509000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp p33383/Proteomics/TIMSTOF_1/spfammatter_20240116/zip/20240116_027_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33383/Proteomics/TIMSTOF_1/spfammatter_20240116/zip/20240116_027_autoQC03dia.d.zip Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:12:45.226611 | timeMax: 2024-01-18 16:12:45.227323 | timeDiff: 5184000.00071168 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 15:12:45.227 | timeMax: 2024-01-18 15:12:45.227 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705590762165169000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:17:27.410951 | timeMax: 2024-01-18 16:17:27.411539 | timeDiff: 5184000.00058818 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 15:17:27.411 | timeMax: 2024-01-18 15:17:27.412 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... NA p32853/Proteomics/EXPLORIS_1/analytic_20240111_m1_m2_prot/20240111_C32853_077_autoQC03dda.raw p32853/Proteomics/EXPLORIS_1/analytic_20240111/20240111_C32853_004_autoQC03dda.raw NA p32853/Proteomics/EXPLORIS_1/analytic_20240111/20240111_C32853_004_autoQC03dda.raw p32853/Proteomics/EXPLORIS_1/analytic_20240111/20240111_C32853_002_autoQC03dda.raw NA p32853/Proteomics/EXPLORIS_1/analytic_20240111_m1_m2_prot/20240111_C32853_077_autoQC03dda.raw p32853/Proteomics/EXPLORIS_1/analytic_20240111/20240111_C32853_002_autoQC03dda.raw p32853/Proteomics/EXPLORIS_1/analytic_20240111/20240111_C32853_004_autoQC03dda.raw NA p32853/Proteomics/EXPLORIS_1/analytic_20240111_m1_m2_prot/20240111_C32853_077_autoQC03dda.raw NA NA p33640/Proteomics/EXPLORIS_1/analytic_20240110/20240110_C33640_007_autoQC03dia.raw nrow dataFiltered(): 126 using 'ggh4x' package ... NA p33640/Proteomics/EXPLORIS_1/analytic_20240110/20240110_C33640_007_autoQC03dia.raw nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... NA nFacets: 1 nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... nrow dataFiltered(): 252 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240104/20240104_008_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 126 using 'ggh4x' package ... Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:21:50.237611 | timeMax: 2024-01-18 16:21:50.238187 | timeDiff: 5184000.00057626 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 15:21:50.238 | timeMax: 2024-01-18 15:21:50.238 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 257587 autoQC01 module APEX long nrow: 984 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 48 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). NA Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:22:15.868726 | timeMax: 2024-01-18 16:22:15.869308 | timeDiff: 5184000.00058174 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 15:22:15.869 | timeMax: 2024-01-18 15:22:15.869 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 38 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 57 rows containing missing values (`geom_point()`). Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705591307248205000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). NA nFacets: 5 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 1066 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? NA Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:24:20.637332 | timeMax: 2024-01-18 16:24:20.637921 | timeDiff: 5184000.00058889 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 15:24:20.637 | timeMax: 2024-01-18 15:24:20.638 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:28:37.938304 | timeMax: 2024-01-18 16:28:37.938887 | timeDiff: 5184000.00058293 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-19 15:28:37.938 | timeMax: 2024-01-18 15:28:37.939 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:29:26.15222 | timeMax: 2024-01-18 16:29:26.152798 | timeDiff: 5184000.0005784 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 15:29:26.152 | timeMax: 2024-01-18 15:29:26.153 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 612 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705587325001551000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:34:00.07746 | timeMax: 2024-01-18 16:34:00.078077 | timeDiff: 5184000.00061655 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-19 15:34:00.077 | timeMax: 2024-01-18 15:34:00.078 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:34:05.446561 | timeMax: 2024-01-18 16:34:05.44714 | timeDiff: 5184000.00057888 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 15:34:05.447 | timeMax: 2024-01-18 15:34:05.447 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:34:10.182139 | timeMax: 2024-01-18 16:34:10.182717 | timeDiff: 5184000.00057817 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 15:34:10.182 | timeMax: 2024-01-18 15:34:10.183 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 16:34:18.914722 | timeMax: 2024-01-18 16:34:18.915305 | timeDiff: 5184000.00058293 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 15:34:18.915 | timeMax: 2024-01-18 15:34:18.915 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705591332840670000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705592037047036000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1280 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1744 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 24 rows containing missing values (`geom_point()`). Warning: Removed 7 rows containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 273 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705591763123184000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705591714895988000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705591044401076000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705592047163340000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705592042410683000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705592055890049000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705580185577130000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-19 17:15:40.791028 | timeMax: 2024-01-18 17:15:40.792068 | timeDiff: 5184000.00104022 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-19 16:15:40.791 | timeMax: 2024-01-18 16:15:40.792 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 612 using 'ggh4x' package ... nrow dataFiltered(): 39 using 'ggh4x' package ... nrow dataFiltered(): 612 using 'ggh4x' package ... nrow dataFiltered(): 39 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705591457551257000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp nrow dataFiltered(): 612 using 'ggh4x' package ... nrow dataFiltered(): 39 using 'ggh4x' package ... nrow dataFiltered(): 612 using 'ggh4x' package ... nrow dataFiltered(): 39 using 'ggh4x' package ... nrow dataFiltered(): 612 using 'ggh4x' package ... nrow dataFiltered(): 39 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705594537339204000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 07:33:02.402671 | timeMax: 2024-01-19 07:33:02.40351 | timeDiff: 5184000.00083852 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 06:33:02.403 | timeMax: 2024-01-19 06:33:02.404 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1088 using 'ggh4x' package ... Warning: Removed 25 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 286 using 'ggh4x' package ... autoQC01 module APEX wide nrow: 257631 autoQC01 module APEX long nrow: 816 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 46 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 07:38:32.56288 | timeMax: 2024-01-19 07:38:32.56348 | timeDiff: 5184000.00060058 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 06:38:32.563 | timeMax: 2024-01-19 06:38:32.563 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 630 using 'ggh4x' package ... nrow dataFiltered(): 39 using 'ggh4x' package ... Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 07:56:54.820824 | timeMax: 2024-01-19 07:56:54.821725 | timeDiff: 5184000.00090027 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 06:56:54.821 | timeMax: 2024-01-19 06:56:54.822 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705646309517224000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 08:00:46.769504 | timeMax: 2024-01-19 08:00:46.77041 | timeDiff: 5184000.00090528 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-20 07:00:46.7695 | timeMax: 2024-01-19 07:00:46.77041 | timeDiff: 5184000.00090981 nFacets: 1 nFacets: 1 input timeRange: 7776000 | timeMin: 2023-11-20 07:00:46.77 | timeMax: 2024-01-19 07:00:46.77 | timeDiff: 5184000 nFacets: 1 nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 08:01:24.010355 | timeMax: 2024-01-19 08:01:24.011209 | timeDiff: 5184000.00085402 nFacets: 4 Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705647679690330000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 08:27:39.628236 | timeMax: 2024-01-19 08:27:39.628809 | timeDiff: 5184000.00057292 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 630 using 'ggh4x' package ... nrow dataFiltered(): 39 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 07:27:39.62824 | timeMax: 2024-01-19 07:27:39.62881 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 07:27:39.628 | timeMax: 2024-01-19 07:27:39.629 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705590547026898000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 08:54:14.227672 | timeMax: 2024-01-19 08:54:14.228566 | timeDiff: 5184000.00089431 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 07:54:14.228 | timeMax: 2024-01-19 07:54:14.229 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 08:57:39.599893 | timeMax: 2024-01-19 08:57:39.600776 | timeDiff: 5184000.00088358 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 07:57:39.6 | timeMax: 2024-01-19 07:57:39.601 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 09:00:56.125482 | timeMax: 2024-01-19 09:00:56.126087 | timeDiff: 5184000.00060511 nFacets: 4 Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705651251468513000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 09:07:38.101453 | timeMax: 2024-01-19 09:07:38.102532 | timeDiff: 5184000.00107932 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 08:07:38.10145 | timeMax: 2024-01-19 08:07:38.10253 | timeDiff: 5184000.00108004 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 08:07:38.101 | timeMax: 2024-01-19 08:07:38.103 | timeDiff: 5184000.00199986 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... NA nrow dataFiltered(): 208 using 'ggh4x' package ... p33969/Proteomics/EXPLORIS_1/analytic_20240117/20240117_C33969_033a_autoQC03dda.raw NA p33969/Proteomics/EXPLORIS_1/analytic_20240117/20240117_C33969_033a_autoQC03dda.raw p32853/Proteomics/EXPLORIS_1/analytic_20240111_m1_m2_prot/20240111_C32853_077_autoQC03dda.raw nrow dataFiltered(): 208 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... NA p32853/Proteomics/EXPLORIS_1/analytic_20240111_m1_m2_phos/20240111_C32853_077_autoQC03dda.raw Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 09:08:56.8524 | timeMax: 2024-01-19 09:08:56.852973 | timeDiff: 5184000.00057244 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 08:08:56.8524 | timeMax: 2024-01-19 08:08:56.85297 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 08:08:56.852 | timeMax: 2024-01-19 08:08:56.853 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705651653008029000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp nrow dataFiltered(): 208 using 'ggh4x' package ... NA nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... p32853/Proteomics/EXPLORIS_1/analytic_20240111/20240111_C32853_002_autoQC03dda.raw NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705650850720307000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705651733707348000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 09:12:19.74966 | timeMax: 2024-01-19 09:12:19.7503 | timeDiff: 5184000.00064015 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 08:12:19.75 | timeMax: 2024-01-19 08:12:19.75 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 09:20:16.319135 | timeMax: 2024-01-19 09:20:16.319828 | timeDiff: 5184000.00069237 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-20 08:20:16.31914 | timeMax: 2024-01-19 08:20:16.31983 | timeDiff: 5184000.00069022 Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705651056360672000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705652413098155000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 09:21:15.389968 | timeMax: 2024-01-19 09:21:15.391298 | timeDiff: 5184000.00132966 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 08:21:15.39 | timeMax: 2024-01-19 08:21:15.391 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705652469903100000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 09:23:50.491337 | timeMax: 2024-01-19 09:23:50.492271 | timeDiff: 5184000.00093484 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-20 08:23:50.491 | timeMax: 2024-01-19 08:23:50.492 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705652626519718000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705651936698722000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 11:28:53.393607 | timeMax: 2024-01-19 11:28:53.394541 | timeDiff: 5184000.0009346 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 10:28:53.394 | timeMax: 2024-01-19 10:28:53.395 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). NA nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 18 rows containing missing values (`geom_point()`). Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 11:29:30.299911 | timeMax: 2024-01-19 11:29:30.300822 | timeDiff: 5184000.00091052 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2023-11-20 10:29:30.3 | timeMax: 2024-01-19 10:29:30.301 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1776 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1776 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 126 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... nrow dataFiltered(): 1776 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-23 10:29:49.867 | timeMax: 2024-01-19 10:29:30.301 | timeDiff: 2332780.43400002 nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 18 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 9 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 18 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-01 10:30:04.841 | timeMax: 2024-01-19 10:29:30.301 | timeDiff: 1555165.46000004 nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-08 10:30:12.955 | timeMax: 2024-01-19 10:29:30.301 | timeDiff: 950357.346000195 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 65 using 'ggh4x' package ... NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 1040 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 780 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705660166733360000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705660129971721000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 11:40:16.287127 | timeMax: 2024-01-19 11:40:16.28839 | timeDiff: 5184000.00126243 nFacets: 4 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2023-11-20 10:40:16.287 | timeMax: 2024-01-19 10:40:16.288 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 630 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705649255631923000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 12:15:38.389874 | timeMax: 2024-01-19 12:15:38.390453 | timeDiff: 5184000.0005796 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 11:15:38.38987 | timeMax: 2024-01-19 11:15:38.39045 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 11:15:38.39 | timeMax: 2024-01-19 11:15:38.39 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... NA NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705660812116518000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp p33640/Proteomics/TIMSTOF_1/analytic_20240115/zip/20240115_004_autoQC03dia.d.zip NA p33868/Proteomics/TIMSTOF_1/analytic_20240116/zip/20240112_001_autoQC03dia.d.zip NA Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 13:35:18.21852 | timeMax: 2024-01-19 13:35:18.219167 | timeDiff: 5184000.00064754 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-20 12:35:18.21852 | timeMax: 2024-01-19 12:35:18.21917 | timeDiff: 5184000.00064993 Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705667715205342000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 13:42:30.998565 | timeMax: 2024-01-19 13:42:30.999143 | timeDiff: 5184000.00057864 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 1 nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 12:42:30.99856 | timeMax: 2024-01-19 12:42:30.99914 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 12:42:30.999 | timeMax: 2024-01-19 12:42:30.999 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705662934977446000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 15:06:20.858011 | timeMax: 2024-01-19 15:06:20.858604 | timeDiff: 5184000.00059342 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-20 14:06:20.85801 | timeMax: 2024-01-19 14:06:20.8586 | timeDiff: 5184000.00059009 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 14:06:20.858 | timeMax: 2024-01-19 14:06:20.859 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... NA p33599/Proteomics/EXPLORIS_2/analytic_20231212/20231212_C33599_019_autoQC03dda.raw input timeRange: 220752000 | timeMin: 2023-11-20 14:06:20.858 | timeMax: 2024-01-19 15:15:38.598542 | timeDiff: 5184557.74054217 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 220752000 | timeMin: 2023-11-20 14:06:20.858 | timeMax: 2024-01-19 14:15:38.599 | timeDiff: 5184557.74099994 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 220752000 | timeMin: 2018-06-01 14:15:39.924 | timeMax: 2024-01-19 14:15:38.599 | timeDiff: 177811198.675 nFacets: 1 nrow dataFiltered(): 3016 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... NA nFacets: 4 nrow dataFiltered(): 15504 using 'ggh4x' package ... Warning: Removed 83 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p29694/Proteomics/EXPLORIS_2/analytic_20221019_SQ_PQ500_meth/20221018_C29694_006_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20230918/20230918_002_autoQC01.raw p33212/Proteomics/EXPLORIS_2/tobiasko_20231020/20231020_006_autoQC01.raw p33164/Proteomics/EXPLORIS_2/analytic_20231026/20231026_C33164_001_autoQC01.raw p33356/Proteomics/EXPLORIS_2/analytic_20231113/20231113_C33356_012_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20231113/20231113_002_autoQC01.raw p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_012_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p33875/Proteomics/EXPLORIS_2/spfammatter_20240108/20240108_012_autoQC01.raw p32503/Proteomics/EXPLORIS_2/analytic_20230824/20230824_C32503_001_autoQC01.raw p32787/Proteomics/EXPLORIS_2/analytic_20230913/20230913_C32787_013_autoQC01.raw NA nFacets: 5 nrow dataFiltered(): 19380 using 'ggh4x' package ... Warning: Removed 112 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 6 nrow dataFiltered(): 23256 using 'ggh4x' package ... Warning: Removed 140 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 7 nrow dataFiltered(): 27132 using 'ggh4x' package ... Warning: Removed 159 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 8 nrow dataFiltered(): 31008 using 'ggh4x' package ... Warning: Removed 215 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 9 nrow dataFiltered(): 34884 using 'ggh4x' package ... Warning: Removed 238 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 10 nrow dataFiltered(): 38760 using 'ggh4x' package ... Warning: Removed 246 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 11 nrow dataFiltered(): 42636 using 'ggh4x' package ... Warning: Removed 270 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). p31025/Proteomics/EXPLORIS_2/analytic_20230306/20230306_C31025_007_autoQC01.raw Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705673177833984000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-20 18:41:43.671994 | timeMax: 2024-01-19 18:41:43.672568 | timeDiff: 5184000.00057459 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 195 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 17:41:43.67199 | timeMax: 2024-01-19 17:41:43.67257 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-20 17:41:43.672 | timeMax: 2024-01-19 17:41:43.673 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 195 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 630 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705668148012047000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp NA p33868/Proteomics/TIMSTOF_1/galliserena_20240117_/zip/20240117_001_autoQC03dia.d.zip NA plotClick: fn has changed to /srv/www/htdocs//NA p33868/Proteomics/TIMSTOF_1/galliserena_20240117_/zip/20240117_001_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p33868/Proteomics/TIMSTOF_1/galliserena_20240117_/zip/20240117_001_autoQC03dia.d.zip NA plotClick: fn has changed to /srv/www/htdocs//NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705645979222725000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705647411337164000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705686100726063000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705647643182575000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Execution halted Warning message: agg could not write to the given file