Listening on http://127.0.0.1:37963

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-11-21 17:00:40.782635 | timeMax: 2024-01-20 17:00:40.783219 | timeDiff: 5184000.00058413
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1296
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
input timeRange: 7776000 | timeMin: 2023-11-21 16:00:40.783 | timeMax: 2024-01-20 16:00:40.783 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1296
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning: Removed 4 rows containing missing values (`geom_line()`).
nFacets: 4
nrow dataFiltered(): 1120
using 'ggh4x' package ...
Warning: Removed 27 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 286
using 'ggh4x' package ...
p33947/Proteomics/QEXACTIVE_1/analytic_20240119/20240119_C33947_005_autoQC03dda.raw
autoQC01 module APEX wide nrow: 257785
autoQC01 module APEX long nrow: 840
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 52 rows containing missing values (`geom_point()`).
Warning: Removed 3 rows containing missing values (`geom_line()`).
p33876/Proteomics/QEXACTIVE_1/analytic_20240105/20240105_C33876_010_autoQC01.raw
NA
p33876/Proteomics/QEXACTIVE_1/analytic_20240105/20240105_C33876_010_autoQC01.raw
p33933/Proteomics/QEXACTIVE_1/analytic_20240112/20240112_C33933_001_autoQC01.raw
p33961/Proteomics/QEXACTIVE_1/analytic_20240115/20240115_C33961_001_autoQC01.raw
p33950/Proteomics/QEXACTIVE_1/analytic_20240116/20240116_C33950_002_autoQC01.raw
NA
p33960/Proteomics/QEXACTIVE_1/analytic_20240116/20240116_C33960_004_autoQC01.raw
p33950/Proteomics/QEXACTIVE_1/analytic_20240116/20240116_C33950_010re02_autoQC01.raw
p33947/Proteomics/QEXACTIVE_1/analytic_20240119/20240119_C33947_004_autoQC01.raw
p34008/Proteomics/QEXACTIVE_1/analytic_20240119/20240119_C34008_004_autoQC01.raw
p33950/Proteomics/QEXACTIVE_1/analytic_20240116/20240116_C33950_010r_autoQC01.raw
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1705766437114375000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted