Listening on http://127.0.0.1:39741 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-27 10:10:09.926044 | timeMax: 2024-01-26 10:10:09.92663 | timeDiff: 5184000.00058627 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-27 09:10:09.92604 | timeMax: 2024-01-26 09:10:09.92663 | timeDiff: 5184000.00058985 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-27 09:10:09.926 | timeMax: 2024-01-26 09:10:09.927 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240125/20240125_003_autoQC03dda.raw nrow dataFiltered(): 208 using 'ggh4x' package ... NA nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 1168 using 'ggh4x' package ... Warning: Removed 19 rows containing missing values (`geom_point()`). NA Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-27 15:00:34.09902 | timeMax: 2024-01-26 15:00:34.099609 | timeDiff: 5184000.00058913 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-27 14:00:34.09902 | timeMax: 2024-01-26 14:00:34.09961 | timeDiff: 5184000.00059009 Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706277630811102000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-27 15:42:47.981869 | timeMax: 2024-01-26 15:42:47.982454 | timeDiff: 5184000.00058508 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-27 14:42:47.982 | timeMax: 2024-01-26 14:42:47.982 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706260206163341000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 169 using 'ggh4x' package ... Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-27 17:55:01.818536 | timeMax: 2024-01-26 17:55:01.819145 | timeDiff: 5184000.00060916 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-27 16:55:01.819 | timeMax: 2024-01-26 16:55:01.819 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706280164672356000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-28 11:53:48.144151 | timeMax: 2024-01-27 11:53:48.144739 | timeDiff: 5184000.00058866 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1184 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-28 10:53:48.144 | timeMax: 2024-01-27 10:53:48.145 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1184 using 'ggh4x' package ... NA nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... nrow dataFiltered(): 1184 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706352824743143000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 09:31:24.991499 | timeMax: 2024-01-29 09:31:24.992068 | timeDiff: 5184000.00056839 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-11-30 08:31:24.9915 | timeMax: 2024-01-29 08:31:24.99207 | timeDiff: 5184000.00057006 Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706517081918806000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 10:06:14.612331 | timeMax: 2024-01-29 10:06:14.6129 | timeDiff: 5184000.00056958 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 09:06:14.61233 | timeMax: 2024-01-29 09:06:14.6129 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 09:06:14.612 | timeMax: 2024-01-29 09:06:14.613 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/lkunz_20240125/20240125_004_autoQC03dia.raw NA nrow dataFiltered(): 221 using 'ggh4x' package ... p33994/Proteomics/EXPLORIS_1/analytic_20240126/20240126_C33994_029_autoQC03dda.raw NA nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-25 09:06:16.328 | timeMax: 2024-01-29 09:06:14.613 | timeDiff: 345598.284999847 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 26 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 0 Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-01-14 09:07:38.494 | timeMax: 2024-01-29 09:06:14.613 | timeDiff: 1295916.11899996 nFacets: 1 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-12-24 09:08:06.765 | timeMax: 2024-01-29 09:06:14.613 | timeDiff: 3110287.84799981 nFacets: 1 nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 108 using 'ggh4x' package ... nrow dataFiltered(): 91 using 'ggh4x' package ... nrow dataFiltered(): 108 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706519171538869000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 13:38:14.395 | timeMax: 2024-01-29 13:38:14.395668 | timeDiff: 5184000.00066876 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 12:38:14.395 | timeMax: 2024-01-29 12:38:14.396 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 13:47:30.941001 | timeMax: 2024-01-29 13:47:30.941566 | timeDiff: 5184000.00056505 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 12:47:30.941 | timeMax: 2024-01-29 12:47:30.942 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1216 using 'ggh4x' package ... nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706531891361089000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706532447924768000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 14:11:45.741923 | timeMax: 2024-01-29 14:11:45.742499 | timeDiff: 5184000.00057554 nFacets: 4 Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706533902476744000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 16:22:18.820315 | timeMax: 2024-01-29 16:22:18.820885 | timeDiff: 5184000.00056982 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 15:22:18.82031 | timeMax: 2024-01-29 15:22:18.82088 | timeDiff: 5184000.00056982 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 15:22:18.82 | timeMax: 2024-01-29 15:22:18.821 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... p33969/Proteomics/EXPLORIS_2/analytic_20240122/20240122_C33969_033_autoQC03dda.raw NA p34034/Proteomics/EXPLORIS_2/shigup_20240126/20240126_012_autoQC03dia.raw NA p33914/Proteomics/EXPLORIS_2/analytic_20240117/20240117_C33914_040_autoQC03dia.raw NA nrow dataFiltered(): 234 using 'ggh4x' package ... p34034/Proteomics/EXPLORIS_2/shigup_20240126/20240126_012_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... NA nrow dataFiltered(): 221 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706541735746038000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 16:54:39.960949 | timeMax: 2024-01-29 16:54:39.961519 | timeDiff: 5184000.0005703 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 15:54:39.96095 | timeMax: 2024-01-29 15:54:39.96152 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 15:54:39.961 | timeMax: 2024-01-29 15:54:39.962 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... NA nrow dataFiltered(): 156 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706543676974634000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-11-30 16:57:11.984053 | timeMax: 2024-01-29 16:57:11.98463 | timeDiff: 5184000.00057769 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 15:57:11.98405 | timeMax: 2024-01-29 15:57:11.98463 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2023-11-30 15:57:11.984 | timeMax: 2024-01-29 15:57:11.985 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 156 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 156 using 'ggh4x' package ... NA p34034/Proteomics/EXPLORIS_2/shigup_20240126/20240126_012_autoQC03dia.raw Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706543828995725000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2023-12-01 08:03:45.931429 | timeMax: 2024-01-30 08:03:45.932001 | timeDiff: 5184000.00057244 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2023-12-01 07:03:45.93143 | timeMax: 2024-01-30 07:03:45.932 | timeDiff: 5184000.00057006 Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706288098580798000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1706598222915135000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file