Listening on http://127.0.0.1:46461

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2023-12-01 13:59:08.067374 | timeMax: 2024-01-30 13:59:08.067956 | timeDiff: 5184000.0005815
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 32 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2023-12-01 12:59:08.067 | timeMax: 2024-01-30 12:59:08.068 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Removed 32 rows containing missing values (`geom_point()`).
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 325
using 'ggh4x' package ...
NA
p34084/Proteomics/QEXACTIVE_1/analytic_20240130/20240130_C34084_001_autoQC03dda.raw
NA
p34084/Proteomics/QEXACTIVE_1/analytic_20240130/20240130_C34084_001_autoQC03dda.raw
NA
autoQC01 module APEX wide nrow: 258885
autoQC01 module APEX long nrow: 888
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 64 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
Warning in file(con, "w") :
  cannot open file '/usr/local/lib/R/site-library/fgczqcms/shiny/fgczqcms-dashboard/logs-qc/shinylogs_fgczqcms-dashboard_1706619544293691000.json': Permission denied
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted