Listening on http://127.0.0.1:34717 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-04 12:43:23.879235 | timeMax: 2024-03-04 12:43:23.879878 | timeDiff: 5184000.00064325 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-01-04 11:43:23.879 | timeMax: 2024-03-04 11:43:23.88 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1104 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... NA Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-04 12:50:32.268085 | timeMax: 2024-03-04 12:50:32.268836 | timeDiff: 5184000.00075078 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-04 11:50:32.268 | timeMax: 2024-03-04 11:50:32.269 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1392 using 'ggh4x' package ... Warning: Removed 7 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 252 using 'ggh4x' package ... nrow dataFiltered(): 988 using 'ggh4x' package ... Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-04 13:47:34.315058 | timeMax: 2024-03-04 13:47:34.315679 | timeDiff: 5184000.00062037 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-04 12:47:34.315 | timeMax: 2024-03-04 12:47:34.316 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1360 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709553028303359000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-04 14:15:10.56146 | timeMax: 2024-03-04 14:15:10.562059 | timeDiff: 5184000.00059962 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-04 13:15:10.561 | timeMax: 2024-03-04 13:15:10.562 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709552599040940000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-05 10:04:10.794702 | timeMax: 2024-03-05 10:04:10.79529 | timeDiff: 5184000.00058794 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-05 09:04:10.7947 | timeMax: 2024-03-05 09:04:10.79529 | timeDiff: 5184000.00059009 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-05 09:04:10.795 | timeMax: 2024-03-05 09:04:10.795 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709629447690820000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-05 11:27:21.919949 | timeMax: 2024-03-05 11:27:21.920553 | timeDiff: 5184000.00060439 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-01-05 10:27:21.92 | timeMax: 2024-03-05 10:27:21.921 | timeDiff: 5184000.00099993 nFacets: 1 nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 954 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA p34355/Proteomics/TIMSTOF_1/jpelisek_20240301_/zip/20240301_001_autoQC03dia.d.zip NA Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-07 07:37:22.306509 | timeMax: 2024-03-07 07:37:22.307081 | timeDiff: 5184000.00057149 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-07 06:37:22.307 | timeMax: 2024-03-07 06:37:22.307 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 44 rows containing missing values (`geom_point()`). NA autoQC01 module APEX wide nrow: 262185 autoQC01 module APEX long nrow: 1188 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 56 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 442 using 'ggh4x' package ... NA p34389/Proteomics/QEXACTIVE_1/analytic_20240305/20240305_C34389_009_autoQC03dda.raw NA NA p34477/Proteomics/QEXACTIVE_1/analytic_20240306/20240306_C34477_001_autoQC01.raw NA p34477/Proteomics/QEXACTIVE_1/analytic_20240306/20240306_C34477_001_autoQC01.raw NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709793439256231000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-07 14:18:09.017318 | timeMax: 2024-03-07 14:18:09.017905 | timeDiff: 5184000.00058675 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-07 13:18:09.017 | timeMax: 2024-03-07 13:18:09.018 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240306/20240306_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/spfammatter_20240306/20240306_002_autoQC01.raw NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709817485915393000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-08 09:10:57.178293 | timeMax: 2024-03-08 09:10:57.178877 | timeDiff: 5184000.00058436 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 1 nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-08 08:10:57.17829 | timeMax: 2024-03-08 08:10:57.17888 | timeDiff: 5184000.00058985 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-08 08:10:57.178 | timeMax: 2024-03-08 08:10:57.179 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/lkunz_20240307/20240307_004_autoQC03dda.raw NA nFacets: 4 nrow dataFiltered(): 784 using 'ggh4x' package ... Warning: Removed 11 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 360 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/lkunz_20230530/20230530_006_autoQC4L_2ul.raw plotClick: fn has changed to /srv/www/htdocs//NA NA nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709885454135150000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-08 11:49:14.41711 | timeMax: 2024-03-08 11:49:14.417691 | timeDiff: 5184000.00058126 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1152 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-08 10:49:14.417 | timeMax: 2024-03-08 10:49:14.418 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1728 using 'ggh4x' package ... Warning: Removed 45 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 262361 autoQC01 module APEX long nrow: 1296 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 64 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 442 using 'ggh4x' package ... NA p34389/Proteomics/QEXACTIVE_1/analytic_20240305/20240305_C34389_009_autoQC03dda.raw Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709894951332338000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-11 09:07:35.597673 | timeMax: 2024-03-11 09:07:35.598261 | timeDiff: 5184000.00058794 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-11 08:07:35.598 | timeMax: 2024-03-11 08:07:35.598 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 5 rows containing missing values (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 832 using 'ggh4x' package ... NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710144451922608000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-11 09:33:11.790819 | timeMax: 2024-03-11 09:33:11.791397 | timeDiff: 5184000.00057864 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-11 08:33:11.791 | timeMax: 2024-03-11 08:33:11.791 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... NA p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_014_autoQC03dda.raw NA nrow dataFiltered(): 208 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240227/20240227_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240219/20240219_003_autoQC03dda.raw NA p34241/Proteomics/EXPLORIS_2/analytic_20240215/20240215_C34241_012_autoQC03dda.raw p34255/Proteomics/EXPLORIS_2/analytic_20240214/20240213_C34255_007_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240219/20240219_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240227/20240227_003_autoQC03dda.raw NA p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_014_autoQC03dda.raw NA NA nrow dataFiltered(): 396 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240229/20240229_004_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240227/20240227_004_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240229/20240229_004_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240229/20240229_004_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240229/20240229_004_autoQC03dia.raw NA plotClick: NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_008_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240219/20240219_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240227/20240227_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240229/20240229_003_autoQC03dda.raw NA p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_014_autoQC03dda.raw input timeRange: 7776000 | timeMin: 2024-01-11 08:33:11.791 | timeMax: 2024-03-11 08:33:13.73027 | timeDiff: 5184001.93927002 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 396 using 'ggh4x' package ... nrow dataFiltered(): 208 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-11 08:33:11.791 | timeMax: 2024-03-11 08:33:13.73 | timeDiff: 5184001.93900013 nFacets: 1 nrow dataFiltered(): 208 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_014_autoQC03dda.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240229/20240229_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240229/20240229_004_autoQC03dia.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710145988697856000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-11 10:44:37.840065 | timeMax: 2024-03-11 10:44:37.840775 | timeDiff: 5184000.0007093 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-11 09:44:37.84 | timeMax: 2024-03-11 09:44:37.841 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_002_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... NA NA p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_014_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240229/20240229_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240219/20240219_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240227/20240227_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240229/20240229_003_autoQC03dda.raw NA p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_014_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw NA nrow dataFiltered(): 221 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw NA nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw NA nrow dataFiltered(): 221 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240227/20240227_004_autoQC03dia.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw NA nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA nrow dataFiltered(): 414 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw input timeRange: 7776000 | timeMin: 2024-02-04 09:44:58.442 | timeMax: 2024-03-11 09:44:37.841 | timeDiff: 3110379.39900017 nFacets: 1 nrow dataFiltered(): 130 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... nrow dataFiltered(): 306 using 'ggh4x' package ... NA nrow dataFiltered(): 306 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710150274795461000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-11 12:07:51.769246 | timeMax: 2024-03-11 12:07:51.769847 | timeDiff: 5184000.00060105 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-11 11:07:51.76925 | timeMax: 2024-03-11 11:07:51.76985 | timeDiff: 5184000.0006001 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-11 11:07:51.769 | timeMax: 2024-03-11 11:07:51.77 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710155268626199000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-11 12:24:13.721666 | timeMax: 2024-03-11 12:24:13.722287 | timeDiff: 5184000.00062037 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-11 11:24:13.72167 | timeMax: 2024-03-11 11:24:13.72229 | timeDiff: 5184000.00062013 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-11 11:24:13.722 | timeMax: 2024-03-11 11:24:13.722 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw nrow dataFiltered(): 221 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_016_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240229/20240229_004_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/lkunz_20240214/20240214_004rep_autoQC03dia.raw nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... NA p34526/Proteomics/EXPLORIS_2/analytic_20240307/20240307_C34526_021_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710156250660022000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-11 16:43:41.434374 | timeMax: 2024-03-11 16:43:41.435022 | timeDiff: 5184000.00064778 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-11 15:43:41.43437 | timeMax: 2024-03-11 15:43:41.43502 | timeDiff: 5184000.00064993 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-11 15:43:41.434 | timeMax: 2024-03-11 15:43:41.435 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_202403011/20240311_001_autoQC03dda.raw NA NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA nrow dataFiltered(): 234 using 'ggh4x' package ... p34347/Proteomics/EXPLORIS_2/analytic_20240229/20240229_C34347_014_autoQC03dda.raw nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_004_autoQC03dia.raw NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710171818378635000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-12 09:34:55.379811 | timeMax: 2024-03-12 09:34:55.380395 | timeDiff: 5184000.00058436 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-12 08:34:55.38 | timeMax: 2024-03-12 08:34:55.38 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1709558107147153000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp autoQC01 module APEX wide nrow: 262625 autoQC01 module APEX long nrow: 840 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 24 rows containing missing values (`geom_point()`). nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710232492334874000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-12 16:23:51.387594 | timeMax: 2024-03-12 16:23:51.388249 | timeDiff: 5184000.00065541 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-12 15:23:51.388 | timeMax: 2024-03-12 15:23:51.388 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1120 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1792 using 'ggh4x' package ... Warning: Removed 45 rows containing missing values (`geom_point()`). p34515/Proteomics/QEXACTIVE_1/analytic_20240306/20240306_C34515_001_autoQC01.raw autoQC01 module APEX wide nrow: 262647 autoQC01 module APEX long nrow: 1344 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 64 rows containing missing values (`geom_point()`). NA p3000/Proteomics/QEXACTIVE_1/analytic_20240312/20240312_C3000_001_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 455 using 'ggh4x' package ... NA NA Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710257028303888000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-12 17:27:11.514339 | timeMax: 2024-03-12 17:27:11.51492 | timeDiff: 5184000.00058103 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-12 16:27:11.51434 | timeMax: 2024-03-12 16:27:11.51492 | timeDiff: 5184000.00057983 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-12 16:27:11.514 | timeMax: 2024-03-12 16:27:11.515 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... plotClick: fn has changed to /srv/www/htdocs//NA NA nrow dataFiltered(): 468 using 'ggh4x' package ... nrow dataFiltered(): 468 using 'ggh4x' package ... plotClick: p3000/Proteomics/EXPLORIS_2/analytic_202403011/20240311_005_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_202403011/20240311_004_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_202403011/20240311_004_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_202403011/20240311_005_autoQC03dia.raw Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710260828446354000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-13 09:04:24.689058 | timeMax: 2024-03-13 09:04:24.689636 | timeDiff: 5184000.00057817 nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-01-13 08:04:24.68906 | timeMax: 2024-03-13 08:04:24.68964 | timeDiff: 5184000.00057983 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-13 08:04:24.689 | timeMax: 2024-03-13 08:04:24.69 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-01-13 08:04:24.689 | timeMax: 2024-03-13 09:06:37.774055 | timeDiff: 5184133.08505559 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2024-01-13 08:04:24.689 | timeMax: 2024-03-13 08:06:37.774 | timeDiff: 5184133.08500004 nFacets: 1 nrow dataFiltered(): 260 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 31536000 | timeMin: 2023-06-04 08:06:39.09 | timeMax: 2024-03-13 08:06:37.774 | timeDiff: 24451198.684 nFacets: 1 nrow dataFiltered(): 1209 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 720 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 1144 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1209 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 720 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710317061367875000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-13 10:18:41.742153 | timeMax: 2024-03-13 10:18:41.742742 | timeDiff: 5184000.00058913 nFacets: 4 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-13 09:18:41.74215 | timeMax: 2024-03-13 09:18:41.74274 | timeDiff: 5184000.00059009 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-13 09:18:41.742 | timeMax: 2024-03-13 09:18:41.743 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710321518683574000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning in dir.create(path) : cannot create dir 'logs-qc', reason 'Permission denied' fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-01-13 11:43:03.656947 | timeMax: 2024-03-13 11:43:03.657647 | timeDiff: 5184000.00070071 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1152 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-01-13 10:43:03.657 | timeMax: 2024-03-13 10:43:03.658 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1152 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 260 using 'ggh4x' package ... NA NA nFacets: 1 nrow dataFiltered(): 468 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 Warning in file(con, "w") : cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710326580538018000.json': No such file or directory Warning: Error in file: cannot open the connection 34: file 33: writeLines 32: jsonlite::write_json 31: write_logs_json 30: write_logs 29: callback 1: runApp Warning: Error in basename: a character vector argument expected 63: basename 62: use_tracking 1: runApp