Listening on http://127.0.0.1:45085

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-13 13:25:52.397577 | timeMax: 2024-03-13 13:25:52.398162 | timeDiff: 5184000.00058532
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2024-01-13 12:25:52.398 | timeMax: 2024-03-13 12:25:52.398 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1168
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 45 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-13 13:26:10.207152 | timeMax: 2024-03-13 13:26:10.207739 | timeDiff: 5184000.00058699
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 45 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
input timeRange: 7776000 | timeMin: 2024-01-13 12:26:10.207 | timeMax: 2024-03-13 12:26:10.208 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 45 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 455
using 'ggh4x' package ...
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-13 13:30:15.837034 | timeMax: 2024-03-13 13:30:15.837674 | timeDiff: 5184000.00064015
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 45 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
input timeRange: 7776000 | timeMin: 2024-01-13 12:30:15.837 | timeMax: 2024-03-13 12:30:15.838 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 45 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
nFacets: 4
nrow dataFiltered(): 1168
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-13 13:31:41.978381 | timeMax: 2024-03-13 13:31:41.978965 | timeDiff: 5184000.00058365
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2024-01-13 12:31:41.978 | timeMax: 2024-03-13 12:31:41.979 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1168
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-13 13:38:25.248415 | timeMax: 2024-03-13 13:38:25.249017 | timeDiff: 5184000.00060201
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 800
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-13 12:38:25.248 | timeMax: 2024-03-13 12:38:25.249 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 800
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1168
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-13 13:39:42.024017 | timeMax: 2024-03-13 13:39:42.024626 | timeDiff: 5184000.00060916
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1264
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-13 12:39:42.024 | timeMax: 2024-03-13 12:39:42.025 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1264
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1680
using 'ggh4x' package ...
Warning: Removed 6 rows containing missing values (`geom_point()`).
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 4
nrow dataFiltered(): 1776
using 'ggh4x' package ...
Warning: Removed 45 rows containing missing values (`geom_point()`).
Warning: Removed 2 rows containing missing values (`geom_line()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710333012487503000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710333098603033000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-13 13:41:22.216047 | timeMax: 2024-03-13 13:41:22.21667 | timeDiff: 5184000.00062323
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1600
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-13 12:41:22.216 | timeMax: 2024-03-13 12:41:22.217 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1600
using 'ggh4x' package ...
Warning: Removed 13 rows containing missing values (`geom_point()`).
nFacets: 2
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 252
using 'ggh4x' package ...
nrow dataFiltered(): 546
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710332748629780000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710332766724077000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710333502168390000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710333578867524000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710333679030258000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp


Execution halted