Listening on http://127.0.0.1:35781

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-14 13:42:11.486843 | timeMax: 2024-03-14 13:42:11.48743 | timeDiff: 5184000.00058746
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710420127693764000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-14 13:49:16.670802 | timeMax: 2024-03-14 13:49:16.671386 | timeDiff: 5184000.00058413
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 486
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
nrow dataFiltered(): 260
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-14 12:49:16.6708 | timeMax: 2024-03-14 12:49:16.67139 | timeDiff: 5184000.00058985
nFacets: 1
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 486
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-14 12:49:16.671 | timeMax: 2024-03-14 12:49:16.671 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 486
using 'ggh4x' package ...
nFacets: 4
nrow dataFiltered(): 780
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 162
using 'ggh4x' package ...
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1360
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
NA
p34176/Proteomics/FUSION_2/chiawei_20240313/20240313_005_autoQC01.raw
NA
p34176/Proteomics/FUSION_2/chiawei_20240313/20240313_005_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p34176/Proteomics/FUSION_2/chiawei_20240313/20240313_005_autoQC01.raw
NA