Listening on http://127.0.0.1:42379

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-20 08:56:49.147618 | timeMax: 2024-03-20 08:56:49.148204 | timeDiff: 5184000.00058532
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2024-01-20 07:56:49.148 | timeMax: 2024-03-20 07:56:49.148 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 1344
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 5 rows containing missing values (`geom_point()`).
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 180
using 'ggh4x' package ...
nrow dataFiltered(): 832
using 'ggh4x' package ...
NA
NA
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-20 08:57:06.516647 | timeMax: 2024-03-20 08:57:06.517228 | timeDiff: 5184000.00058126
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 576
using 'ggh4x' package ...
nrow dataFiltered(): 260
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-20 07:57:06.51665 | timeMax: 2024-03-20 07:57:06.51723 | timeDiff: 5184000.00058007
nFacets: 1
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 576
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-20 07:57:06.517 | timeMax: 2024-03-20 07:57:06.517 | timeDiff: 5184000
nFacets: 1
nrow dataFiltered(): 260
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 576
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 52
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 810
using 'ggh4x' package ...
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-20 09:18:50.182522 | timeMax: 2024-03-20 09:18:50.183105 | timeDiff: 5184000.00058365
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 736
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-20 08:18:50.183 | timeMax: 2024-03-20 08:18:50.183 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 736
using 'ggh4x' package ...
Warning: Removed 11 rows containing missing values (`geom_point()`).
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710922726818737000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
Warning in dir.create(path) :
  cannot create dir 'logs-qc', reason 'Permission denied'
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-20 09:54:18.153217 | timeMax: 2024-03-20 09:54:18.153802 | timeDiff: 5184000.00058532
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 4
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 180
using 'ggh4x' package ...
nrow dataFiltered(): 832
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-20 08:54:18.15322 | timeMax: 2024-03-20 08:54:18.1538 | timeDiff: 5184000.00058007
nFacets: 4
nrow dataFiltered(): 832
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 180
using 'ggh4x' package ...
input timeRange: 7776000 | timeMin: 2024-01-20 08:54:18.153 | timeMax: 2024-03-20 08:54:18.154 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 832
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 180
using 'ggh4x' package ...
Warning in file(con, "w") :
  cannot open file 'logs-qc//shinylogs_fgczqcms-dashboard_1710921405365603000.json': No such file or directory
Warning: Error in file: cannot open the connection
  34: file
  33: writeLines
  32: jsonlite::write_json
  31: write_logs_json
  30: write_logs
  29: callback
   1: runApp
NA
p3000/Proteomics/FUSION_2/chiawei_20240318/20240318_008_autoQC03dia.raw
p34595/Proteomics/FUSION_2/rhweldon_20240318/20240318_018_autoQC03dda.raw
NA
p34595/Proteomics/FUSION_2/rhweldon_20240318/20240318_018_autoQC03dda.raw
plotClick: 
fn has changed to /srv/www/htdocs//p34595/Proteomics/FUSION_2/rhweldon_20240318/20240318_018_autoQC03dda.raw
plotClick: 
p34595/Proteomics/FUSION_2/rhweldon_20240318/20240318_018_autoQC03dda.raw
plotClick: 
plotClick: 
plotClick: 
NA
nrow dataFiltered(): 832
using 'ggh4x' package ...
nrow dataFiltered(): 180
using 'ggh4x' package ...