Listening on http://127.0.0.1:43167

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-01-21 12:00:30.718193 | timeMax: 2024-03-21 12:00:30.718778 | timeDiff: 5184000.00058556
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1184
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-01-21 11:00:30.718 | timeMax: 2024-03-21 11:00:30.719 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1184
using 'ggh4x' package ...
Warning: Removed 10 rows containing missing values (`geom_point()`).
NA
nFacets: 4
nrow dataFiltered(): 1824
using 'ggh4x' package ...
Warning: Removed 34 rows containing missing values (`geom_point()`).
Warning: Removed 3 rows containing missing values (`geom_line()`).
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
autoQC01 module APEX wide nrow: 263703
autoQC01 module APEX long nrow: 1368
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 58 rows containing missing values (`geom_point()`).
Warning: Removed 3 rows containing missing values (`geom_line()`).
NA
p34608/Proteomics/QEXACTIVE_1/analytic_20240320/20240320_C34608_001_autoQC01.raw
p34701/Proteomics/QEXACTIVE_1/analytic_20240320/20240320_C34701_004_autoQC01.raw
NA
p34701/Proteomics/QEXACTIVE_1/analytic_20240320/20240320_C34701_004_autoQC01.raw
p34608/Proteomics/QEXACTIVE_1/analytic_20240320/20240320_C34608_001_autoQC01.raw
NA
p34132/Proteomics/QEXACTIVE_1/analytic_20240201/20240201_C34132_001_autoQC01.raw
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 455
using 'ggh4x' package ...
NA
NA
vals$rawrr: TRUE
vals$rawrr: FALSE
vals$rawDiag: TRUE
vals$rawDiag: FALSE


Execution halted