Listening on http://127.0.0.1:40523

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-02-11 06:44:24.284271 | timeMax: 2024-04-11 07:44:24.285382 | timeDiff: 5184000.00111032
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2024-02-11 05:44:24.284 | timeMax: 2024-04-11 05:44:24.285 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1232
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 25 rows containing missing values (`geom_point()`).
Warning: Removed 8 rows containing missing values (`geom_line()`).
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 416
using 'ggh4x' package ...
NA
p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240409_C34851_009_autoQC03dda.raw
p34842/Proteomics/QEXACTIVE_1/analytic_20240409/20240409_C34842_007_autoQC03dda.raw
p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240410_C34851_005_autoQC03dda.raw
NA
p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240410_C34851_005_autoQC03dda.raw
NA
NA
p34477/Proteomics/QEXACTIVE_1/analytic_20240306/20240306_C34477_001_autoQC01.raw
autoQC01 module APEX wide nrow: 265111
autoQC01 module APEX long nrow: 1284
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 56 rows containing missing values (`geom_point()`).
Warning: Removed 1 row containing missing values (`geom_line()`).
NA
NA
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 50 rows containing missing values (`geom_point()`).
Warning: Removed 8 rows containing missing values (`geom_line()`).
nrow dataFiltered(): 1712
using 'ggh4x' package ...
Warning: Removed 75 rows containing missing values (`geom_point()`).
Warning: Removed 8 rows containing missing values (`geom_line()`).
nrow dataFiltered(): 0
nrow dataFiltered(): 0
NA
nrow dataFiltered(): 416
using 'ggh4x' package ...
nrow dataFiltered(): 416
using 'ggh4x' package ...
nrow dataFiltered(): 416
using 'ggh4x' package ...
p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240409_C34851_009_autoQC03dda.raw
NA
p34230/Proteomics/QEXACTIVE_1/analytic_20240220/20240220_C34230_011_autoQC03dda.raw
NA
nrow dataFiltered(): 416
using 'ggh4x' package ...


Execution halted