Listening on http://127.0.0.1:37323 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-18 12:58:44.722741 | timeMax: 2024-04-18 13:58:44.723947 | timeDiff: 5184000.00120544 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 0 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 648 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-18 11:58:44.72274 | timeMax: 2024-04-18 11:58:44.72395 | timeDiff: 5184000.00120997 nFacets: 0 nFacets: 1 nrow dataFiltered(): 648 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-18 11:58:44.723 | timeMax: 2024-04-18 11:58:44.724 | timeDiff: 5184000.00099993 nFacets: 0 nFacets: 1 nrow dataFiltered(): 648 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip NA p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip plotClick: plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-18 12:59:09.595687 | timeMax: 2024-04-18 13:59:09.596587 | timeDiff: 5184000.00089979 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-18 11:59:09.59569 | timeMax: 2024-04-18 11:59:09.59659 | timeDiff: 5184000.00090003 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-18 11:59:09.596 | timeMax: 2024-04-18 11:59:09.597 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 648 using 'ggh4x' package ... plotClick: p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip p34328/Proteomics/TIMSTOF_1/analytic_20240417/zip/20240417_001_autoQC03dia.d.zip nrow dataFiltered(): 540 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-19 11:37:00.357347 | timeMax: 2024-04-19 12:37:00.357916 | timeDiff: 5184000.00056934 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 299 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-19 10:37:00.35735 | timeMax: 2024-04-19 10:37:00.35792 | timeDiff: 5184000.00056982 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-19 10:37:00.357 | timeMax: 2024-04-19 10:37:00.358 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 299 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... NA p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_020_autoQC03dia.raw nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-22 08:01:06.088384 | timeMax: 2024-04-22 09:01:06.08895 | timeDiff: 5184000.00056624 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 520 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-22 07:01:06.08838 | timeMax: 2024-04-22 07:01:06.08895 | timeDiff: 5184000.00057006 nFacets: 4 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-22 07:01:06.088 | timeMax: 2024-04-22 07:01:06.089 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 520 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-22 10:40:33.276942 | timeMax: 2024-04-22 11:40:33.277534 | timeDiff: 5184000.00059175 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-02-22 09:40:33.277 | timeMax: 2024-04-22 09:40:33.278 | timeDiff: 5184000.00100017 nFacets: 4 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-22 10:40:37.651946 | timeMax: 2024-04-22 11:40:37.652508 | timeDiff: 5184000.00056219 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-02-22 09:40:37.652 | timeMax: 2024-04-22 09:40:37.653 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 0 Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file 3: agg could not write to the given file