Listening on http://127.0.0.1:43769 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-22 20:43:33.556846 | timeMax: 2024-04-22 21:43:33.557518 | timeDiff: 5184000.0006721 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-22 19:43:33.55685 | timeMax: 2024-04-22 19:43:33.55752 | timeDiff: 5184000.00066972 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-22 19:43:33.557 | timeMax: 2024-04-22 19:43:33.558 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA p34614/Proteomics/TIMSTOFFLEX_1/rusdo_20240314/zip/S1-B3_20240314_015_autoQC03dia_123_3-14-2024_20-20-38.d.zip input timeRange: 7776000 | timeMin: 2024-01-23 19:43:36.16716 | timeMax: 2024-04-22 19:43:33.558 | timeDiff: 7775997.39084029 nFacets: 0 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-23 21:43:51.261896 | timeMax: 2024-04-22 19:43:33.558 | timeDiff: 7772382.29610395 nFacets: 0 nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-23 20:43:51.262 | timeMax: 2024-04-22 19:43:33.558 | timeDiff: 7772382.296 NA p33915/Proteomics/TIMSTOFFLEX_1/analytic_20240212/zip/S1-A4_20240212_013_autoQC03dia_60spd_1_2-13-2024_00-00-43_32.d.zip p33915/Proteomics/TIMSTOFFLEX_1/analytic_20240212/zip/S1-A2_20240212_002_autoQC03dia_60spd_1_2-12-2024_18-52-28_19.d.zip NA nrow dataFiltered(): 90 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-22 20:44:44.178102 | timeMax: 2024-04-22 21:44:44.179063 | timeDiff: 5184000.00096035 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-22 19:44:44.178 | timeMax: 2024-04-22 19:44:44.179 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 07:26:32.272016 | timeMax: 2024-04-23 08:26:32.272576 | timeDiff: 5184000.00056052 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-23 06:26:32.272 | timeMax: 2024-04-23 06:26:32.273 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... vals$rawDiag: TRUE vals$rawrr: TRUE NA p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw plotChargeState Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240307/20240307_003_autoQC03dda.raw Plotting chromatograms ... Read 22032 items Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-rawDiag-autoQC03-plot 1: runApp reading index for 20240307_003_autoQC03dda.raw... reading took36.395seconds plotInjectionTime fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 08:05:42.061142 | timeMax: 2024-04-23 09:05:42.061715 | timeDiff: 5184000.00057364 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-23 07:05:42.061 | timeMax: 2024-04-23 07:05:42.062 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw plotClick: fn has changed to /srv/www/htdocs//p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw NA NA nrow dataFiltered(): 486 using 'ggh4x' package ... p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_020_autoQC03dia.raw NA p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_020_autoQC03dia.raw NA nrow dataFiltered(): 486 using 'ggh4x' package ... p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda.raw NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw NA p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw NA p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw input timeRange: 7776000 | timeMin: 2024-03-29 07:05:43.437 | timeMax: 2024-04-23 07:05:42.062 | timeDiff: 2159998.625 nFacets: 4 nrow dataFiltered(): 640 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_001_autoQC01.raw NA p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_010_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_010_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_010_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw NA p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_010_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_001_autoQC01.raw p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_009_autoQC01_X01.raw p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_001_autoQC01_X02.raw NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_001_autoQC01_X02.raw NA p34858/Proteomics/EXPLORIS_2/analytic_20240410/20240410_C34858_009_autoQC01.raw p34858/Proteomics/EXPLORIS_2/analytic_20240410/20240410_C34858_001_autoQC01_20240411014057.raw p34858/Proteomics/EXPLORIS_2/analytic_20240410/20240410_C34858_009_autoQC01.raw p23078/Proteomics/EXPLORIS_2/analytic_20240411/20240411_C23078_008_autoQC01.raw vals$rawDiag: TRUE nFacets: 1 nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw NA p23078/Proteomics/EXPLORIS_2/analytic_20240411/20240411_C23078_015_autoQC03dda.raw p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda.raw NA input timeRange: 7776000 | timeMin: 2024-02-25 07:19:04.067 | timeMax: 2024-03-21 07:19:04.067 | timeDiff: 2160000 nFacets: 1 nrow dataFiltered(): 130 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 288 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-29 07:22:03.612 | timeMax: 2024-04-23 07:22:03.6122 | timeDiff: 2160000.00020003 nFacets: 1 nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-29 07:22:03.612 | timeMax: 2024-04-23 07:22:03.612 | timeDiff: 2160000 nFacets: 1 nrow dataFiltered(): 91 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 07:22:14.341 | timeMax: 2024-04-23 07:22:03.612 | timeDiff: 4665589.27099991 nFacets: 1 nrow dataFiltered(): 273 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 08:26:12.126216 | timeMax: 2024-04-23 09:26:12.126841 | timeDiff: 5184000.00062537 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-23 07:26:12.126 | timeMax: 2024-04-23 07:26:12.127 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1344 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw NA p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_019_autoQC01.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_010_autoQC01.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-03-09 07:26:29.869 | timeMax: 2024-04-23 07:26:12.127 | timeDiff: 3887982.25800014 nFacets: 1 nrow dataFiltered(): 247 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 396 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 08:30:24.032852 | timeMax: 2024-04-23 09:30:24.033476 | timeDiff: 5184000.0006237 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-23 07:30:24.033 | timeMax: 2024-04-23 07:30:24.033 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw NA p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_020_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240417/20240417_003_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240417/20240417_003_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240417/20240417_003_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240417/20240417_003_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240417/20240417_003_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw input timeRange: 7776000 | timeMin: 2024-03-09 07:30:25.337 | timeMax: 2024-04-23 07:30:24.033 | timeDiff: 3887998.6960001 nFacets: 4 nrow dataFiltered(): 1104 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 08:32:06.165572 | timeMax: 2024-04-23 09:32:06.166237 | timeDiff: 5184000.00066447 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-23 07:32:06.166 | timeMax: 2024-04-23 07:32:06.166 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_2/analytic_20240417/20240417_003_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_002_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 08:58:16.195972 | timeMax: 2024-04-23 09:58:16.19661 | timeDiff: 5184000.00063777 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 286 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-23 07:58:16.19597 | timeMax: 2024-04-23 07:58:16.19661 | timeDiff: 5184000.00064015 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-23 07:58:16.196 | timeMax: 2024-04-23 07:58:16.197 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 286 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw plotClick: fn has changed to /srv/www/htdocs//p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw NA plotClick: fn has changed to /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_020_autoQC03dia.raw p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_020_autoQC03dia.raw NA NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p34814/Proteomics/EXPLORIS_2/analytic_20240405/20240405_C34814_024_autoQC03dda.raw p34814/Proteomics/EXPLORIS_2/analytic_20240405/20240405_C34814_024_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_003_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p34858/Proteomics/EXPLORIS_2/analytic_20240410/20240410_C34858_010_autoQC03dda.raw p34858/Proteomics/EXPLORIS_2/analytic_20240410/20240410_C34858_010_autoQC03dda.raw NA plotClick: p34858/Proteomics/EXPLORIS_2/analytic_20240410/20240410_C34858_010_autoQC03dda.raw p23078/Proteomics/EXPLORIS_2/analytic_20240411/20240411_C23078_015_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p23078/Proteomics/EXPLORIS_2/analytic_20240411/20240411_C23078_015_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/spfammatter_20240402/20240402_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/spfammatter_20240402/20240402_003_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240325/20240325_006_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240325/20240325_006_autoQC03dda.raw NA plotClick: fn has changed to /srv/www/htdocs//p34814/Proteomics/EXPLORIS_2/analytic_20240405/20240405_C34814_024_autoQC03dda.raw p34814/Proteomics/EXPLORIS_2/analytic_20240405/20240405_C34814_024_autoQC03dda.raw nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p34627/Proteomics/EXPLORIS_2/analytic_20240326/20240326_C34627_011_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//NA NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_002_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_006_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_006_autoQC01.raw NA p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_001_autoQC01.raw p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_006_autoQC01.raw p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_007_autoQC01.raw p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_001_autoQC01.raw p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_002_autoQC01.raw p34858/Proteomics/EXPLORIS_2/analytic_20240410/20240410_C34858_009_autoQC01.raw p34858/Proteomics/EXPLORIS_2/analytic_20240410/20240410_C34858_001_autoQC01_20240411014057.raw p23078/Proteomics/EXPLORIS_2/analytic_20240411/20240411_C23078_001_autoQC01.raw p34715/Proteomics/EXPLORIS_2/analytic_20240411/20240411_C34715_001_autoQC01.raw p23078/Proteomics/EXPLORIS_2/analytic_20240411/20240411_C23078_004_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 09:08:03.284761 | timeMax: 2024-04-23 10:08:03.2854 | timeDiff: 5184000.00063896 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-23 08:08:03.28476 | timeMax: 2024-04-23 08:08:03.2854 | timeDiff: 5184000.00063992 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-23 08:08:03.285 | timeMax: 2024-04-23 08:08:03.285 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_004_autoQC03dia.raw nrow dataFiltered(): 522 using 'ggh4x' package ... NA p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_020_autoQC03dia.raw NA nrow dataFiltered(): 522 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 09:52:29.54957 | timeMax: 2024-04-23 10:52:29.550218 | timeDiff: 5184000.00064874 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-23 08:52:29.54957 | timeMax: 2024-04-23 08:52:29.55022 | timeDiff: 5184000.00064993 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-23 08:52:29.55 | timeMax: 2024-04-23 08:52:29.55 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda.raw NA p34858/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34858_010_autoQC03dda_X01.raw nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp NA nFacets: 0 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-23 19:44:46.89119 | timeMax: 2024-04-22 19:44:44.179 | timeDiff: 7775997.28780985 nFacets: 0 nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-24 11:04:45.086987 | timeMax: 2024-04-22 19:44:44.179 | timeDiff: 7724399.09201312 nFacets: 0 nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-24 10:04:45.087 | timeMax: 2024-04-22 19:44:44.179 | timeDiff: 7724399.09200001 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 10:05:23.444361 | timeMax: 2024-04-23 11:05:23.445067 | timeDiff: 5184000.0007062 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 0 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 72 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-23 09:05:23.44436 | timeMax: 2024-04-23 09:05:23.44507 | timeDiff: 5184000.00071001 nFacets: 0 nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-23 09:05:23.444 | timeMax: 2024-04-23 09:05:23.445 | timeDiff: 5184000.00099993 nFacets: 0 nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-01-24 09:05:24.99457 | timeMax: 2024-04-23 09:05:23.445 | timeDiff: 7775998.45042992 nFacets: 0 nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-24 11:05:32.810497 | timeMax: 2024-04-23 09:05:23.445 | timeDiff: 7772390.63450289 nFacets: 0 nFacets: 1 nrow dataFiltered(): 126 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-24 10:05:32.811 | timeMax: 2024-04-23 09:05:23.445 | timeDiff: 7772390.63399982 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 10:52:27.61563 | timeMax: 2024-04-23 11:52:27.616291 | timeDiff: 5184000.00066113 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-23 09:52:27.616 | timeMax: 2024-04-23 09:52:27.616 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_003_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_004_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 11:10:50.881743 | timeMax: 2024-04-23 12:10:50.882412 | timeDiff: 5184000.00066924 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-23 10:10:50.882 | timeMax: 2024-04-23 10:10:50.882 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 266211 autoQC01 module APEX long nrow: 1032 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 16 rows containing missing values (`geom_point()`). NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_004_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 11:39:04.835417 | timeMax: 2024-04-23 12:39:04.836069 | timeDiff: 5184000.00065231 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-23 10:39:04.83542 | timeMax: 2024-04-23 10:39:04.83607 | timeDiff: 5184000.00065017 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-23 10:39:04.835 | timeMax: 2024-04-23 10:39:04.836 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240422/20240422_003_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240423_003_autoQC03dda.raw NA NA p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240423_004_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-23 11:40:49.223585 | timeMax: 2024-04-23 12:40:49.224223 | timeDiff: 5184000.00063777 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-23 10:40:49.224 | timeMax: 2024-04-23 10:40:49.224 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1376 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file 3: agg could not write to the given file 4: agg could not write to the given file 5: agg could not write to the given file 6: agg could not write to the given file 7: agg could not write to the given file 8: agg could not write to the given file 9: agg could not write to the given file