Listening on http://127.0.0.1:40577 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-25 17:39:27.522159 | timeMax: 2024-04-25 18:39:27.523638 | timeDiff: 5184000.00147891 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-25 16:39:27.52216 | timeMax: 2024-04-25 16:39:27.52364 | timeDiff: 5184000.0014801 nFacets: 1 nFacets: 1 input timeRange: 7776000 | timeMin: 2024-02-25 16:39:27.522 | timeMax: 2024-04-25 16:39:27.524 | timeDiff: 5184000.00199986 nFacets: 1 nFacets: 1 nrow dataFiltered(): 504 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... NA p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip NA plotClick: fn has changed to /srv/www/htdocs//NA p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip NA p34855/Proteomics/TIMSTOF_1/kroganowicz_20240412_/zip/20240412_013_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p34855/Proteomics/TIMSTOF_1/kroganowicz_20240412_/zip/20240412_013_autoQC03dia.d.zip NA p34855/Proteomics/TIMSTOF_1/kroganowicz_20240412_/zip/20240412_002_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p34855/Proteomics/TIMSTOF_1/kroganowicz_20240412_/zip/20240412_002_autoQC03dia.d.zip p34855/Proteomics/TIMSTOF_1/kroganowicz_20240412_/zip/20240412_013_autoQC03dia.d.zip p34328/Proteomics/TIMSTOF_1/analytic_20240417/zip/20240417_001_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p34328/Proteomics/TIMSTOF_1/analytic_20240417/zip/20240417_001_autoQC03dia.d.zip p34855/Proteomics/TIMSTOF_1/kroganowicz_20240410_/zip/20240410_004_autoQC03dia.d.zip NA plotClick: fn has changed to /srv/www/htdocs//NA p34855/Proteomics/TIMSTOF_1/kroganowicz_20240410_/zip/20240410_004_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p34855/Proteomics/TIMSTOF_1/kroganowicz_20240410_/zip/20240410_004_autoQC03dia.d.zip NA p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip NA plotClick: fn has changed to /srv/www/htdocs//NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-25 20:25:32.765377 | timeMax: 2024-04-25 21:25:32.76605 | timeDiff: 5184000.00067377 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-25 19:25:32.76538 | timeMax: 2024-04-25 19:25:32.76605 | timeDiff: 5184000.00067019 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-25 19:25:32.765 | timeMax: 2024-04-25 19:25:32.766 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip NA plotClick: p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip plotClick: plotClick: p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip NA plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip NA p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip NA nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-12 19:25:34.414 | timeMax: 2024-04-25 19:25:32.766 | timeDiff: 1123198.352 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 72 using 'ggh4x' package ... plotClick: p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip NA plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip plotClick: fn has changed to /srv/www/htdocs//NA NA plotClick: plotClick: fn has changed to /srv/www/htdocs//p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 72 using 'ggh4x' package ... NA p34196/Proteomics/TIMSTOF_1/spfammatter_20240416/zip/20240417_007_autoQC03dia_25pg_AuroraRAPID.d.zip plotClick: NA p34328/Proteomics/TIMSTOF_1/analytic_20240417/zip/20240417_001_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p34328/Proteomics/TIMSTOF_1/analytic_20240417/zip/20240417_001_autoQC03dia.d.zip NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-26 07:52:00.274037 | timeMax: 2024-04-26 08:52:00.274906 | timeDiff: 5184000.00086904 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-26 06:52:00.274 | timeMax: 2024-04-26 06:52:00.275 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1296 using 'ggh4x' package ... Warning: Removed 10 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). NA p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw p25334/Proteomics/LUMOS_1/dlesli_20240229_DLP236/20240229_028_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw plotClick: vals$rawrr: FALSE NA vals$rawrr: TRUE fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-26 11:52:54.128736 | timeMax: 2024-04-26 12:52:54.129885 | timeDiff: 5184000.0011487 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-26 10:52:54.12874 | timeMax: 2024-04-26 10:52:54.12989 | timeDiff: 5184000.00114989 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-26 10:52:54.129 | timeMax: 2024-04-26 10:52:54.13 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... NA NA plotClick: fn has changed to /srv/www/htdocs//NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240423_004_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240423_004_autoQC03dia.raw NA plotClick: p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240423_004_autoQC03dia.raw NA input timeRange: 7776000 | timeMin: 2024-01-27 10:52:55.79758 | timeMax: 2024-04-26 10:52:54.13 | timeDiff: 7775998.33242011 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 792 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-27 12:57:52.171575 | timeMax: 2024-04-26 10:52:54.13 | timeDiff: 7772101.95842528 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 792 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-27 11:57:52.172 | timeMax: 2024-04-26 10:52:54.13 | timeDiff: 7772101.95800018 p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240423_004_autoQC03dia.raw plotClick: plotClick: NA plotClick: fn has changed to /srv/www/htdocs//NA nrow dataFiltered(): 792 using 'ggh4x' package ... p34891/Proteomics/EXPLORIS_2/analytic_20240412/20240412_C34891_008_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-26 11:59:23.480025 | timeMax: 2024-04-26 12:59:23.480663 | timeDiff: 5184000.00063848 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-26 10:59:23.48 | timeMax: 2024-04-26 10:59:23.481 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_2/spfammatter_20240408/20240408_006_autoQC01.raw nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-26 12:49:07.653471 | timeMax: 2024-04-26 13:49:07.654158 | timeDiff: 5184000.00068665 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-26 11:49:07.65347 | timeMax: 2024-04-26 11:49:07.65416 | timeDiff: 5184000.00068998 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-26 11:49:07.653 | timeMax: 2024-04-26 11:49:07.654 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... nrow dataFiltered(): 180 using 'ggh4x' package ... NA nrow dataFiltered(): 325 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-26 12:51:32.873681 | timeMax: 2024-04-26 13:51:32.874594 | timeDiff: 5184000.00091386 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-26 11:51:32.874 | timeMax: 2024-04-26 11:51:32.875 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA input timeRange: 7776000 | timeMin: 2024-03-02 11:51:33.678 | timeMax: 2024-04-26 11:51:32.875 | timeDiff: 4751999.19700003 nFacets: 4 nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-26 12:52:34.39405 | timeMax: 2024-04-26 13:52:34.394711 | timeDiff: 5184000.00066042 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-26 11:52:34.39405 | timeMax: 2024-04-26 11:52:34.39471 | timeDiff: 5184000.00065994 nFacets: 4 nFacets: 1 input timeRange: 7776000 | timeMin: 2024-02-26 11:52:34.394 | timeMax: 2024-04-26 11:52:34.395 | timeDiff: 5184000.00099993 nFacets: 4 nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 624 using 'ggh4x' package ... nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 266783 autoQC01 module APEX long nrow: 984 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 16 rows containing missing values (`geom_point()`). nrow dataFiltered(): 144 using 'ggh4x' package ... NA NA autoQC01 module APEX long nrow: 984 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2FWHM Warning: Removed 24 rows containing missing values (`geom_point()`). plot_click: fn has changed to /srv/www/htdocs//NA plot_click: plot_click: p3000/Proteomics/EXPLORIS_2/analytic_20240325/20240325_003_autoQC01.raw p34441/Proteomics/EXPLORIS_2/analytic_20240319/20240319_C34441_001_autoQC01.raw NA nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nrow dataFiltered(): 1312 using 'ggh4x' package ... Warning: Removed 8 rows containing missing values (`geom_point()`). NA plotClick: fn has changed to /srv/www/htdocs//NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... NA nrow dataFiltered(): 540 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-04-21 10:50:34.792646 | timeMax: 2024-04-28 10:50:34.792688 | timeDiff: 604800.000041962 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-04-21 10:50:39.092927 | timeMax: 2024-04-28 10:50:39.092962 | timeDiff: 604800.000034809 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-28 09:50:46.132783 | timeMax: 2024-04-28 10:50:46.133345 | timeDiff: 5184000.00056171 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-28 08:50:46.133 | timeMax: 2024-04-28 08:50:46.133 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). autoQC01 module APEX wide nrow: 266981 autoQC01 module APEX long nrow: 1116 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 16 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-29 08:51:00.84361 | timeMax: 2024-04-28 08:50:46.133 | timeDiff: 7775985.28938985 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 810 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-29 10:51:08.23723 | timeMax: 2024-04-28 08:50:46.133 | timeDiff: 7772377.89577007 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 810 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-29 09:51:08.237 | timeMax: 2024-04-28 08:50:46.133 | timeDiff: 7772377.89599991 nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 810 using 'ggh4x' package ... nrow dataFiltered(): 810 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 09:24:57.96437 | timeMax: 2024-04-29 10:24:57.965047 | timeDiff: 5184000.00067711 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 624 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 08:24:57.96437 | timeMax: 2024-04-29 08:24:57.96505 | timeDiff: 5184000.00067997 nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 08:24:57.964 | timeMax: 2024-04-29 08:24:57.965 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 992 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA NA NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 11:37:16.528127 | timeMax: 2024-04-29 12:37:16.52885 | timeDiff: 5184000.00072265 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) input timeRange: 7776000 | timeMin: 2024-02-29 10:37:16.528 | timeMax: 2024-04-29 10:37:16.529 | timeDiff: 5184000.00099993 autoQC01 module APEX wide nrow: 267025 autoQC01 module APEX long nrow: 1152 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 16 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 11:37:52.847686 | timeMax: 2024-04-29 12:37:52.84859 | timeDiff: 5184000.00090408 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-02-29 10:37:52.848 | timeMax: 2024-04-29 10:37:52.849 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 13:19:49.026019 | timeMax: 2024-04-29 14:19:49.026587 | timeDiff: 5184000.0005672 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 12:19:49.02602 | timeMax: 2024-04-29 12:19:49.02659 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 12:19:49.026 | timeMax: 2024-04-29 12:19:49.027 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... NA p33994/Proteomics/EXPLORIS_1/analytic_20240426/20240426_C33994_005_autoQC03dda.raw NA nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 13:46:00.658495 | timeMax: 2024-04-29 14:46:00.65907 | timeDiff: 5184000.00057507 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-02-29 12:46:00.659 | timeMax: 2024-04-29 12:46:00.659 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1232 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... NA nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 13:52:48.406676 | timeMax: 2024-04-29 14:52:48.407529 | timeDiff: 5184000.00085354 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 12:52:48.40668 | timeMax: 2024-04-29 12:52:48.40753 | timeDiff: 5184000.0008502 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 12:52:48.407 | timeMax: 2024-04-29 12:52:48.408 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... p33994/Proteomics/EXPLORIS_1/analytic_20240426/20240426_C33994_005_autoQC03dda.raw NA nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 14:23:05.544077 | timeMax: 2024-04-29 15:23:05.544653 | timeDiff: 5184000.00057554 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 13:23:05.54408 | timeMax: 2024-04-29 13:23:05.54465 | timeDiff: 5184000.00056982 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 13:23:05.544 | timeMax: 2024-04-29 13:23:05.545 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p33994/Proteomics/EXPLORIS_1/analytic_20240426/20240426_C33994_005_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 14:27:47.016615 | timeMax: 2024-04-29 15:27:47.017257 | timeDiff: 5184000.00064254 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1088 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-02-29 13:27:47.017 | timeMax: 2024-04-29 13:27:47.017 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1088 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p33994/Proteomics/EXPLORIS_1/analytic_20240426/20240426_C33994_002_autoQC01.raw nrow dataFiltered(): 624 using 'ggh4x' package ... nrow dataFiltered(): 162 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 15:45:02.412452 | timeMax: 2024-04-29 16:45:02.4131 | timeDiff: 5184000.00064754 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 14:45:02.41245 | timeMax: 2024-04-29 14:45:02.4131 | timeDiff: 5184000.00065017 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 14:45:02.412 | timeMax: 2024-04-29 14:45:02.413 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... NA p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_011_autoQC03dda.raw nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 16:33:03.97222 | timeMax: 2024-04-29 17:33:03.972894 | timeDiff: 5184000.00067377 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 15:33:03.97222 | timeMax: 2024-04-29 15:33:03.97289 | timeDiff: 5184000.00066996 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 15:33:03.972 | timeMax: 2024-04-29 15:33:03.973 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 16:38:50.213547 | timeMax: 2024-04-29 17:38:50.214188 | timeDiff: 5184000.00064087 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 15:38:50.21355 | timeMax: 2024-04-29 15:38:50.21419 | timeDiff: 5184000.00063992 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 15:38:50.214 | timeMax: 2024-04-29 15:38:50.214 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... NA p33994/Proteomics/EXPLORIS_1/analytic_20240426/20240426_C33994_005_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-04-22 18:11:59.7699 | timeMax: 2024-04-29 18:11:59.769934 | timeDiff: 604800.000033379 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-02-29 21:49:13.541371 | timeMax: 2024-04-29 22:49:13.542247 | timeDiff: 5184000.00087667 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 65 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 20:49:13.54137 | timeMax: 2024-04-29 20:49:13.54225 | timeDiff: 5184000.00087976 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 20:49:13.541 | timeMax: 2024-04-29 20:49:13.542 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... p34976/Proteomics/TIMSTOF_1/wente_20240429_/zip/20240429_001_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p34976/Proteomics/TIMSTOF_1/wente_20240429_/zip/20240429_001_autoQC03dda.d.zip NA input timeRange: 7776000 | timeMin: 2024-01-30 20:49:15.8161 | timeMax: 2024-03-30 20:49:15.816 | timeDiff: 5183999.99989986 nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 774 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-30 22:49:51.981383 | timeMax: 2024-03-30 20:49:15.816 | timeDiff: 5180363.8346169 Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 0 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 774 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-30 21:49:51.981 | timeMax: 2024-03-30 20:49:15.816 | timeDiff: 5180363.83500004 nFacets: 1 nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 20:49:53.375 | timeMax: 2024-04-29 20:49:53.37491 | timeDiff: 5183999.99990988 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 65 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-29 20:49:53.375 | timeMax: 2024-04-29 20:49:53.375 | timeDiff: 5184000 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 07:50:26.708876 | timeMax: 2024-04-30 08:50:26.709573 | timeDiff: 5184000.00069714 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 06:50:26.70888 | timeMax: 2024-04-30 06:50:26.70957 | timeDiff: 5184000.00069022 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 06:50:26.709 | timeMax: 2024-04-30 06:50:26.71 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... p33994/Proteomics/EXPLORIS_1/analytic_20240429/20240429_C33994_005_autoQC03dda.raw NA p33994/Proteomics/EXPLORIS_1/analytic_20240429/20240429_C33994_005_autoQC03dda.raw NA NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 08:13:48.790863 | timeMax: 2024-04-30 09:13:48.791447 | timeDiff: 5184000.00058365 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-01 07:13:48.791 | timeMax: 2024-04-30 07:13:48.791 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-04-23 09:16:53.721245 | timeMax: 2024-04-30 09:16:53.721267 | timeDiff: 604800.000022173 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 08:35:50.041106 | timeMax: 2024-04-30 09:35:50.041942 | timeDiff: 5184000.00083613 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-01 07:35:50.041 | timeMax: 2024-04-30 07:35:50.042 | timeDiff: 5184000.00100017 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1264 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 09:49:58.775196 | timeMax: 2024-04-30 10:49:58.775855 | timeDiff: 5184000.00065923 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-01 08:49:58.775 | timeMax: 2024-04-30 08:49:58.776 | timeDiff: 5184000.00099993 nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 09:52:58.767352 | timeMax: 2024-04-30 10:52:58.768689 | timeDiff: 5184000.00133681 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-01 08:52:58.767 | timeMax: 2024-04-30 08:52:58.769 | timeDiff: 5184000.00200009 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 09:53:41.468615 | timeMax: 2024-04-30 10:53:41.469691 | timeDiff: 5184000.00107598 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-01 08:53:41.469 | timeMax: 2024-04-30 08:53:41.47 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1488 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 10:56:15.822191 | timeMax: 2024-04-30 11:56:15.82284 | timeDiff: 5184000.00064874 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-01 09:56:15.822 | timeMax: 2024-04-30 09:56:15.823 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-14 09:56:17.512 | timeMax: 2024-04-30 09:56:15.823 | timeDiff: 1382398.31099987 nFacets: 4 nrow dataFiltered(): 496 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_005_autoQC01.raw NA p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_005_autoQC01.raw NA p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_005_autoQC01.raw nrow dataFiltered(): 496 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw NA p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_010_autoQC01.raw p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_005_autoQC01.raw nrow dataFiltered(): 496 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). nrow dataFiltered(): 496 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nrow dataFiltered(): 496 using 'ggh4x' package ... Warning: Removed 6 rows containing missing values (`geom_point()`). nrow dataFiltered(): 496 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw vals$rawrr: TRUE NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw Reading raw file: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw Plotting chromatograms ... Read 22032 items p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 11:06:59.888052 | timeMax: 2024-04-30 12:06:59.888815 | timeDiff: 5184000.00076294 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-01 10:06:59.888 | timeMax: 2024-04-30 10:06:59.889 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_010_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_011_autoQC03dda.raw NA p35020/Proteomics/EXPLORIS_2/analytic_20240426/20240426_C35020_020_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 12:10:24.864305 | timeMax: 2024-04-30 13:10:24.865271 | timeDiff: 5184000.00096583 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-01 11:10:24.864 | timeMax: 2024-04-30 11:10:24.865 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01_20240430120542.raw nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 12:24:54.08352 | timeMax: 2024-04-30 13:24:54.084168 | timeDiff: 5184000.00064754 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-01 11:24:54.084 | timeMax: 2024-04-30 11:24:54.084 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 12:41:56.044182 | timeMax: 2024-04-30 13:41:56.044851 | timeDiff: 5184000.00066924 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 11:41:56.04418 | timeMax: 2024-04-30 11:41:56.04485 | timeDiff: 5184000.00067019 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 11:41:56.044 | timeMax: 2024-04-30 11:41:56.045 | timeDiff: 5184000.00100017 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_011_autoQC03dda.raw NA p35020/Proteomics/EXPLORIS_2/analytic_20240426/20240426_C35020_020_autoQC03dia.raw NA nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). plotClick: fn has changed to /srv/www/htdocs//NA NA p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01_20240430120542.raw p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_002_autoQC01.raw NA p35011/Proteomics/EXPLORIS_2/analytic_20240428/20240428_C35011_011_autoQC03dda.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:09:58.691407 | timeMax: 2024-04-30 14:09:58.691971 | timeDiff: 5184000.00056314 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:09:58.69141 | timeMax: 2024-04-30 12:09:58.69197 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:09:58.691 | timeMax: 2024-04-30 12:09:58.692 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp p34965/Proteomics/TIMSTOFFLEX_1/rusdo_20240423_/zip/20240423_059_autoQC03dia.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:15:20.729756 | timeMax: 2024-04-30 14:15:20.730936 | timeDiff: 5184000.00117993 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-01 12:15:20.73 | timeMax: 2024-04-30 12:15:20.731 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1536 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 0 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-31 12:16:21.93382 | timeMax: 2024-04-30 12:15:20.731 | timeDiff: 7775938.79717994 nFacets: 0 nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-31 14:17:20.875101 | timeMax: 2024-04-30 12:15:20.731 | timeDiff: 7772279.8558991 nFacets: 0 nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-01-31 13:17:20.875 | timeMax: 2024-04-30 12:15:20.731 | timeDiff: 7772279.85599995 nFacets: 0 nFacets: 1 nrow dataFiltered(): 252 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:18:10.217338 | timeMax: 2024-04-30 14:18:10.217985 | timeDiff: 5184000.00064707 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 0 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:18:10.21734 | timeMax: 2024-04-30 12:18:10.21799 | timeDiff: 5184000.00064993 nFacets: 0 nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:18:10.217 | timeMax: 2024-04-30 12:18:10.218 | timeDiff: 5184000.00099993 nFacets: 0 nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:21:23.90666 | timeMax: 2024-04-30 14:21:23.907234 | timeDiff: 5184000.00057459 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:21:23.90666 | timeMax: 2024-04-30 12:21:23.90723 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:21:23.907 | timeMax: 2024-04-30 12:21:23.907 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:21:39.05901 | timeMax: 2024-04-30 14:21:39.05961 | timeDiff: 5184000.00059986 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-03-01 12:21:39.059 | timeMax: 2024-04-30 12:21:39.06 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:23:06.006946 | timeMax: 2024-04-30 14:23:06.007635 | timeDiff: 5184000.00068879 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 486 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:23:06.00695 | timeMax: 2024-04-30 12:23:06.00763 | timeDiff: 5184000.00067997 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:23:06.007 | timeMax: 2024-04-30 12:23:06.008 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 486 using 'ggh4x' package ... NA p34196/Proteomics/TIMSTOF_1/spfammatter_20240425/zip/20240425_000_autoQC03dia_Aurora.d.zip nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-04-10 12:23:07.547 | timeMax: 2024-04-30 12:23:06.008 | timeDiff: 1727998.46099997 nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `new_geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-04-10 12:24:18.778 | timeMax: 2024-04-30 12:23:06.008 | timeDiff: 1727927.22999978 nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nrow dataFiltered(): 18 using 'ggh4x' package ... `new_geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 plotClick: fn has changed to /srv/www/htdocs//NA plotClick: plotClick: nFacets: 0 nrow dataFiltered(): 0 nrow dataFiltered(): 162 using 'ggh4x' package ... nFacets: 1 Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-01-31 12:24:43.95104 | timeMax: 2024-04-30 12:23:06.008 | timeDiff: 7775902.05695987 nFacets: 0 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 1 input timeRange: 7776000 | timeMin: 2024-01-31 14:25:10.858126 | timeMax: 2024-04-30 12:23:06.008 | timeDiff: 7772275.14987373 nFacets: 0 nrow dataFiltered(): 252 using 'ggh4x' package ... nFacets: 1 input timeRange: 7776000 | timeMin: 2024-01-31 13:25:10.858 | timeMax: 2024-04-30 12:23:06.008 | timeDiff: 7772275.14999986 nrow dataFiltered(): 252 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:34:48.382919 | timeMax: 2024-04-30 14:34:48.383658 | timeDiff: 5184000.00073886 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 0 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nrow dataFiltered(): 198 using 'ggh4x' package ... Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 12:34:48.38292 | timeMax: 2024-04-30 12:34:48.38366 | timeDiff: 5184000.00073981 nFacets: 0 nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:34:48.383 | timeMax: 2024-04-30 12:34:48.384 | timeDiff: 5184000.00100017 nFacets: 0 nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:53:24.167022 | timeMax: 2024-04-30 14:53:24.167706 | timeDiff: 5184000.00068378 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:53:24.16702 | timeMax: 2024-04-30 12:53:24.16771 | timeDiff: 5184000.00068998 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:53:24.167 | timeMax: 2024-04-30 12:53:24.168 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_003_autoQC03dda.raw nrow dataFiltered(): 325 using 'ggh4x' package ... NA nFacets: 1 nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... nrow dataFiltered(): 0 Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:55:10.388214 | timeMax: 2024-04-30 14:55:10.389366 | timeDiff: 5184000.00115156 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:55:10.38821 | timeMax: 2024-04-30 12:55:10.38937 | timeDiff: 5184000.00116014 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:55:10.388 | timeMax: 2024-04-30 12:55:10.389 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 13:56:14.526677 | timeMax: 2024-04-30 14:56:14.527347 | timeDiff: 5184000.00067043 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:56:14.52668 | timeMax: 2024-04-30 12:56:14.52735 | timeDiff: 5184000.00067019 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 12:56:14.527 | timeMax: 2024-04-30 12:56:14.527 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... Execution halted There were 12 warnings (use warnings() to see them)