Listening on http://127.0.0.1:40791 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 14:26:37.095331 | timeMax: 2024-04-30 15:26:37.095917 | timeDiff: 5184000.00058603 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 13:26:37.09533 | timeMax: 2024-04-30 13:26:37.09592 | timeDiff: 5184000.00058985 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-01 13:26:37.095 | timeMax: 2024-04-30 13:26:37.096 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... NA input timeRange: 7776000 | timeMin: 2024-04-17 13:26:39.407 | timeMax: 2024-04-30 13:26:37.096 | timeDiff: 1123197.68899989 nFacets: 1 nrow dataFiltered(): 130 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 130 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-29 13:27:17.909 | timeMax: 2024-04-30 13:26:37.096 | timeDiff: 86359.1870000362 nFacets: 1 nrow dataFiltered(): 39 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-04-30 13:26:37.096 | timeMax: 2024-04-30 13:26:37.096 | timeDiff: 0 nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 0 Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-04-30 13:26:37.096 | timeMax: 2024-04-30 13:27:27.15964 | timeDiff: 50.0636398792267 nFacets: 0 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-04-30 13:26:37.096 | timeMax: 2024-04-30 13:27:27.16 | timeDiff: 50.0640001296997 nFacets: 0 nFacets: 1 nrow dataFiltered(): 0 input timeRange: 7776000 | timeMin: 2024-04-30 13:26:37.096 | timeMax: 2024-04-30 13:26:37.096 | timeDiff: 0 nFacets: 0 nFacets: 1 nrow dataFiltered(): 0 fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-01 14:27:42.570402 | timeMax: 2024-04-30 15:27:42.570987 | timeDiff: 5184000.0005846 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 5 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-01 13:27:42.57 | timeMax: 2024-04-30 13:27:42.571 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 1136 using 'ggh4x' package ... Warning: Removed 5 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-21 13:27:46.114 | timeMax: 2024-04-30 13:27:42.571 | timeDiff: 777596.457000017 nFacets: 1 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 0 nrow dataFiltered(): 104 using 'ggh4x' package ... nrow dataFiltered(): 104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-02 13:27:58.645 | timeMax: 2024-04-30 13:27:42.571 | timeDiff: 2419183.92600012 nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 169 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-22 13:28:20.52 | timeMax: 2024-04-30 13:27:42.571 | timeDiff: 691162.051000118 nFacets: 1 nrow dataFiltered(): 78 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 78 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240423/20240430_003_autoQC03dda.raw nFacets: 0 nrow dataFiltered(): 0 nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 0 Warning: Error in graphics::plot.new: figure margins too large 104: graphics::plot.new 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp input timeRange: 7776000 | timeMin: 2024-04-15 13:28:27.496 | timeMax: 2024-04-30 13:27:42.571 | timeDiff: 1295955.07500005 nFacets: 0 Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$autoQC03-DDA-plot 1: runApp nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA p34965/Proteomics/TIMSTOFFLEX_1/rusdo_20240423_/zip/20240423_059_autoQC03dia.d.zip Execution halted Warning messages: 1: agg could not write to the given file 2: agg could not write to the given file 3: agg could not write to the given file 4: agg could not write to the given file