Listening on http://127.0.0.1:43231

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-03-01 15:40:18.053409 | timeMax: 2024-04-30 16:40:18.054087 | timeDiff: 5184000.00067854
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1552
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-03-01 14:40:18.053 | timeMax: 2024-04-30 14:40:18.054 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1552
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1616
using 'ggh4x' package ...
Warning: Removed 50 rows containing missing values (`geom_point()`).
Warning: Removed 7 rows containing missing values (`geom_line()`).
p35019/Proteomics/QEXACTIVE_1/analytic_20240424/20240425_C35019_008_autoQC01.raw
NA
p34926/Proteomics/QEXACTIVE_1/analytic_20240426/20240426_C34926_004_autoQC01_20240426170929.raw
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 338
using 'ggh4x' package ...
p3000/Proteomics/QEXACTIVE_1/analytic_20240429/20240430_C3000_003_autoQC03dda.raw
NA
fn has changed to NA
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fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-03-01 16:08:17.259699 | timeMax: 2024-04-30 17:08:17.261425 | timeDiff: 5184000.00172615
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 0
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DDA-ui
   1: runApp
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$autoQC03-DIA-ui
   1: runApp
nFacets: 1
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2024-03-01 15:08:17.2597 | timeMax: 2024-04-30 15:08:17.26143 | timeDiff: 5184000.00172997
nFacets: 1
nFacets: 1
input timeRange: 7776000 | timeMin: 2024-03-01 15:08:17.26 | timeMax: 2024-04-30 15:08:17.261 | timeDiff: 5184000.00099993
nFacets: 1
nFacets: 1
nrow dataFiltered(): 522
using 'ggh4x' package ...
nrow dataFiltered(): 325
using 'ggh4x' package ...
nFacets: 0
nrow dataFiltered(): 0
nFacets: 1
nrow dataFiltered(): 198
using 'ggh4x' package ...
Warning: Error in graphics::plot.new: figure margins too large
  104: graphics::plot.new
  101: startPNG
  100: plotPNG
   99: resizeSavedPlot
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$autoQC03-DDA-plot
    1: runApp
NA
p34965/Proteomics/TIMSTOFFLEX_1/rusdo_20240423_/zip/20240423_059_autoQC03dia.d.zip
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-03-01 17:02:39.295968 | timeMax: 2024-04-30 18:02:39.296543 | timeDiff: 5184000.00057435
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1632
using 'ggh4x' package ...
Warning: Removed 51 rows containing missing values (`geom_point()`).
Warning: Removed 8 rows containing missing values (`geom_line()`).
input timeRange: 7776000 | timeMin: 2024-03-01 16:02:39.296 | timeMax: 2024-04-30 16:02:39.297 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1632
using 'ggh4x' package ...
Warning: Removed 51 rows containing missing values (`geom_point()`).
Warning: Removed 8 rows containing missing values (`geom_line()`).
NA


Execution halted
Warning message:
agg could not write to the given file