Listening on http://127.0.0.1:36375 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 09:38:16.039573 | timeMax: 2024-05-07 10:38:16.040221 | timeDiff: 5184000.00064802 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1008 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-08 08:38:16.04 | timeMax: 2024-05-07 08:38:16.04 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1008 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 728 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 10:30:40.226997 | timeMax: 2024-05-07 11:30:40.227584 | timeDiff: 5184000.00058722 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-08 09:30:40.227 | timeMax: 2024-05-07 09:30:40.228 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 0 nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nrow dataFiltered(): 216 using 'ggh4x' package ... NA nrow dataFiltered(): 26 using 'ggh4x' package ... NA nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-06 09:30:43.478 | timeMax: 2024-05-07 09:30:40.228 | timeDiff: 2678396.75 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... p35069/Proteomics/TIMSTOF_1/analytic_20240430_/zip/20240503_005_autoQC03dia.d.zip nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nrow dataFiltered(): 180 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 10:32:47.21433 | timeMax: 2024-05-07 11:32:47.215216 | timeDiff: 5184000.00088525 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 540 using 'ggh4x' package ... nrow dataFiltered(): 338 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-08 09:32:47.21433 | timeMax: 2024-05-07 09:32:47.21522 | timeDiff: 5184000.00088978 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... nFacets: 1 input timeRange: 7776000 | timeMin: 2024-03-08 09:32:47.214 | timeMax: 2024-05-07 09:32:47.215 | timeDiff: 5184000.00099993 nrow dataFiltered(): 338 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 540 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... nFacets: 1 input timeRange: 7776000 | timeMin: 2024-02-07 09:32:49.81951 | timeMax: 2024-05-07 09:32:47.215 | timeDiff: 7775997.39548993 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 1 input timeRange: 7776000 | timeMin: 2024-02-07 11:32:55.543619 | timeMax: 2024-05-07 09:32:47.215 | timeDiff: 7772391.67138124 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 1 input timeRange: 7776000 | timeMin: 2024-02-07 10:32:55.544 | timeMax: 2024-05-07 09:32:47.215 | timeDiff: 7772391.671 NA input timeRange: 15552000 | timeMin: 2024-02-07 10:32:55.544 | timeMax: 2024-05-07 11:33:12.684922 | timeDiff: 7772417.14092207 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 1 input timeRange: 15552000 | timeMin: 2024-02-07 10:32:55.544 | timeMax: 2024-05-07 09:33:12.685 | timeDiff: 7772417.14100003 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 1 input timeRange: 31536000 | timeMin: 2024-02-07 10:32:55.544 | timeMax: 2024-05-07 11:33:19.596892 | timeDiff: 7772424.05289197 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 1 input timeRange: 31536000 | timeMin: 2024-02-07 10:32:55.544 | timeMax: 2024-05-07 09:33:19.597 | timeDiff: 7772424.05299997 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 270 using 'ggh4x' package ... nFacets: 1 input timeRange: 31536000 | timeMin: 2023-11-28 09:33:21.207 | timeMax: 2024-05-07 09:33:19.597 | timeDiff: 13910398.3899999 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 306 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 104 using 'ggh4x' package ... nrow dataFiltered(): 306 using 'ggh4x' package ... p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231206/zip/20231106_001a_autoQC03dda_25ng.d.zip NA p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231206/zip/20231106_002_autoQC03dda_25ng.d.zip p3000/Proteomics/TIMSTOFFLEX_1/antdit_20231219/zip/20231219_002_autoQC03dda_25ng_stdPASEF.d.zip NA nFacets: 1 nrow dataFiltered(): 806 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 450 using 'ggh4x' package ... nrow dataFiltered(): 806 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-08 12:18:22.806626 | timeMax: 2024-05-07 13:18:22.807273 | timeDiff: 5184000.00064731 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-08 11:18:22.807 | timeMax: 2024-05-07 11:18:22.807 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Execution halted