Listening on http://127.0.0.1:39275 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-09 10:13:44.359821 | timeMax: 2024-05-08 11:13:44.360431 | timeDiff: 5184000.00061011 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-09 09:13:44.36 | timeMax: 2024-05-08 09:13:44.36 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1632 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 64 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1648 using 'ggh4x' package ... Warning: Removed 128 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p35067/Proteomics/QEXACTIVE_1/analytic_20240501/20240501_C35067_011_autoQC01.raw NA p35067/Proteomics/QEXACTIVE_1/analytic_20240502/20240502_C35067_021_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_006_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_005_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_005_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_006_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_007_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_006_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_007_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_006_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-09 10:46:02.681482 | timeMax: 2024-05-08 11:46:02.682457 | timeDiff: 5184000.00097513 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-09 09:46:02.681 | timeMax: 2024-05-08 09:46:02.682 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1040 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-09 11:32:42.248811 | timeMax: 2024-05-08 12:32:42.249401 | timeDiff: 5184000.00059056 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 576 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-09 10:32:42.24881 | timeMax: 2024-05-08 10:32:42.2494 | timeDiff: 5184000.00058985 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 576 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-09 10:32:42.249 | timeMax: 2024-05-08 10:32:42.249 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 576 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_006_autoQC03dda.raw NA nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). NA p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_011_autoQC03dda.raw p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_009_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_003_autoQC03dia.raw input timeRange: 7776000 | timeMin: 2024-04-11 10:32:44.075 | timeMax: 2024-05-08 10:32:42.249 | timeDiff: 2332798.17400002 nFacets: 1 nrow dataFiltered(): 143 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_006_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_007_autoQC03dia_newAliquot.raw p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_003_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_005_autoQC03dia.raw p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_003_autoQC03dia.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-09 13:24:40.243329 | timeMax: 2024-05-08 14:24:40.244004 | timeDiff: 5184000.00067472 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 64 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). input timeRange: 7776000 | timeMin: 2024-03-09 12:24:40.243 | timeMax: 2024-05-08 12:24:40.244 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 64 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 128 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). NA p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_007_autoQC01.raw NA p34728/Proteomics/QEXACTIVE_1/analytic_20240326/20240326_C34728_004_autoQC01.raw p34704/Proteomics/QEXACTIVE_1/analytic_20240322/20240322_C34704_013_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-09 14:00:19.6599 | timeMax: 2024-05-08 15:00:19.660566 | timeDiff: 5184000.00066662 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-09 13:00:19.66 | timeMax: 2024-05-08 13:00:19.661 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1056 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p34176/Proteomics/FUSION_2/chiawei_20240507/20240507_019_autoQC01.raw NA p34176/Proteomics/FUSION_2/chiawei_20240507/20240507_019_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p34176/Proteomics/FUSION_2/chiawei_20240507/20240507_019_autoQC01.raw nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 180 using 'ggh4x' package ... nrow dataFiltered(): 780 using 'ggh4x' package ... p35121/Proteomics/FUSION_2/limingqin_20240507/20240506_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//p35121/Proteomics/FUSION_2/limingqin_20240507/20240506_007_autoQC03dda.raw NA p35121/Proteomics/FUSION_2/limingqin_20240507/20240506_007_autoQC03dda.raw plotClick: NA p35121/Proteomics/FUSION_2/limingqin_20240507/20240506_008_autoQC03dia.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 0 nrow dataFiltered(): 338 using 'ggh4x' package ... p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_002_autoQC03dda.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_002_autoQC03dda.raw nrow dataFiltered(): 338 using 'ggh4x' package ... NA p34922/Proteomics/QEXACTIVE_1/analytic_20240417/20240417_C34922_005_autoQC03dda.raw NA p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_015_autoQC03dda.raw NA p34926/Proteomics/QEXACTIVE_1/analytic_20240426/20240426_C34926_010_autoQC03dda.raw p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_015_autoQC03dda.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240429/20240430_C3000_003_autoQC03dda.raw p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_015_autoQC03dda.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240429/20240430_C3000_003_autoQC03dda.raw p34926/Proteomics/QEXACTIVE_1/analytic_20240426/20240426_C34926_010_autoQC03dda.raw NA p35067/Proteomics/QEXACTIVE_1/analytic_20240502/20240502_C35067_021_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_005_autoQC01.raw p35067/Proteomics/QEXACTIVE_1/analytic_20240502/20240502_C35067_021_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240429/20240430_C3000_002_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_005_autoQC01.raw NA p35067/Proteomics/QEXACTIVE_1/analytic_20240502/20240502_C35067_011_autoQC01.raw p35067/Proteomics/QEXACTIVE_1/analytic_20240502/20240502_C35067_001_autoQC01.raw NA p3000/Proteomics/QEXACTIVE_1/analytic_20240429/20240430_C3000_002_autoQC01.raw p35038/Proteomics/QEXACTIVE_1/analytic_20240430/20240430_C35038_001_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240429/20240430_C3000_002_autoQC01.raw p35067/Proteomics/QEXACTIVE_1/analytic_20240501/20240501_C35067_001_autoQC01.raw p35038/Proteomics/QEXACTIVE_1/analytic_20240430/20240430_C35038_006_autoQC01.raw p35038/Proteomics/QEXACTIVE_1/analytic_20240430/20240430_C35038_001_autoQC01.raw NA p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw NA p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw NA p34756/Proteomics/QEXACTIVE_1/analytic_20240327/20240327_C34756_001_autoQC01.raw p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-09 14:10:55.518966 | timeMax: 2024-05-08 15:10:55.520226 | timeDiff: 5184000.00125933 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_001_autoQC01.raw NA p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_014_autoQC01.raw NA nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-09 13:10:55.519 | timeMax: 2024-05-08 13:10:55.52 | timeDiff: 5184000.00099993 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1632 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). p34926/Proteomics/QEXACTIVE_1/analytic_20240426/20240426_C34926_009_autoQC01.raw p35029/Proteomics/QEXACTIVE_1/analytic_20240429/20240429_C35029_001_autoQC01.raw NA p34558/Proteomics/QEXACTIVE_1/analytic_20240313/20240313_C34558_015_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 576 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... nrow dataFiltered(): 576 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... NA Execution halted