Listening on http://127.0.0.1:35595 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-12 21:47:36.820675 | timeMax: 2024-05-11 22:47:36.82168 | timeDiff: 5184000.00100493 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 576 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-12 20:47:36.82068 | timeMax: 2024-05-11 20:47:36.82168 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 576 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-12 20:47:36.821 | timeMax: 2024-05-11 20:47:36.822 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 576 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-11 20:47:42.27754 | timeMax: 2024-05-11 20:47:36.822 | timeDiff: 7775994.54446006 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 864 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-11 22:47:50.426803 | timeMax: 2024-05-11 20:47:36.822 | timeDiff: 7772386.39519691 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 864 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-11 21:47:50.427 | timeMax: 2024-05-11 20:47:36.822 | timeDiff: 7772386.39499998 plotClick: fn has changed to /srv/www/htdocs//p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip NA plotClick: fn has changed to /srv/www/htdocs//p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_010_autoQC03dda.d.zip p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_010_autoQC03dda.d.zip p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-14 08:34:16.729253 | timeMax: 2024-05-13 09:34:16.730027 | timeDiff: 5184000.00077438 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-14 07:34:16.72925 | timeMax: 2024-05-13 07:34:16.73003 | timeDiff: 5184000.00078011 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-14 07:34:16.729 | timeMax: 2024-05-13 07:34:16.73 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 198 using 'ggh4x' package ... NA NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw plotClick: fn has changed to /srv/www/htdocs//p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw NA p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw plotClick: NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-14 08:59:03.969459 | timeMax: 2024-05-13 09:59:03.970023 | timeDiff: 5184000.00056386 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 52 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-14 07:59:03.96946 | timeMax: 2024-05-13 07:59:03.97002 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-14 07:59:03.969 | timeMax: 2024-05-13 07:59:03.97 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_010_autoQC03dda.d.zip p35148/Proteomics/TIMSTOF_1/analytic_20240507_/zip/20240507_024_autoQC03dia.d.zip NA p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip NA p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip p34997/Proteomics/TIMSTOF_1/analytic_20240507/zip/20240507_012_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p34997/Proteomics/TIMSTOF_1/analytic_20240507/zip/20240507_012_autoQC03dda.d.zip p34997/Proteomics/TIMSTOF_1/analytic_20240507/zip/20240507_001_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p34997/Proteomics/TIMSTOF_1/analytic_20240507/zip/20240507_001_autoQC03dda.d.zip NA p34997/Proteomics/TIMSTOF_1/analytic_20240507/zip/20240507_012_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p34997/Proteomics/TIMSTOF_1/analytic_20240507/zip/20240507_012_autoQC03dda.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-14 09:52:10.288127 | timeMax: 2024-05-13 10:52:10.288692 | timeDiff: 5184000.00056481 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 522 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-14 08:52:10.28813 | timeMax: 2024-05-13 08:52:10.28869 | timeDiff: 5184000.00056005 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-14 08:52:10.288 | timeMax: 2024-05-13 08:52:10.289 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... NA nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 522 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-14 15:19:15.493369 | timeMax: 2024-05-13 16:19:15.493932 | timeDiff: 5184000.00056314 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-14 14:19:15.493 | timeMax: 2024-05-13 14:19:15.494 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1504 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1584 using 'ggh4x' package ... Warning: Removed 69 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). NA p35039/Proteomics/QEXACTIVE_1/analytic_20240513/20240513_C35039_001_autoQC01.raw NA p35039/Proteomics/QEXACTIVE_1/analytic_20240513/20240513_C35039_001_autoQC01.raw p35039/Proteomics/QEXACTIVE_1/analytic_20240513/20240513_C35039_001_autoQC01.raw NA input timeRange: 7776000 | timeMin: 2024-03-20 14:19:16.639 | timeMax: 2024-05-13 14:19:15.494 | timeDiff: 4665598.85500002 nFacets: 4 nrow dataFiltered(): 1408 using 'ggh4x' package ... Warning: Removed 68 rows containing missing values (`geom_point()`). Warning: Removed 6 rows containing missing values (`geom_line()`). p35067/Proteomics/QEXACTIVE_1/analytic_20240501/20240501_C35067_006_autoQC01.raw p35067/Proteomics/QEXACTIVE_1/analytic_20240501/20240501_C35067_006_autoQC01.raw NA p35067/Proteomics/QEXACTIVE_1/analytic_20240502/20240502_C35067_021_autoQC01.raw p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_006_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 21:33:31.184016 | timeMax: 2024-05-14 22:33:31.185558 | timeDiff: 5184000.00154185 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-15 21:33:37.25268 | timeMax: 2024-05-14 22:33:37.254253 | timeDiff: 5184000.00157332 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 4 nFacets: 1 nFacets: 1 input timeRange: 7776000 | timeMin: 2024-03-15 20:33:31.184 | timeMax: 2024-05-14 20:33:31.186 | timeDiff: 5184000.00200009 nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-15 20:33:37.25268 | timeMax: 2024-05-14 20:33:37.25425 | timeDiff: 5184000.00157022 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-03-15 20:33:37.253 | timeMax: 2024-05-14 20:33:37.254 | timeDiff: 5184000.00099993 nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). nrow dataFiltered(): 504 using 'ggh4x' package ... nrow dataFiltered(): 312 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 504 using 'ggh4x' package ... NA plotClick: fn has changed to /srv/www/htdocs//p3000/Proteomics/TIMSTOF_1/spfammatter_20240514/zip/20240514_001_autoQC03dda.d.zip p3000/Proteomics/TIMSTOF_1/spfammatter_20240514/zip/20240514_001_autoQC03dda.d.zip NA plotClick: fn has changed to /srv/www/htdocs//p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_010_autoQC03dda.d.zip p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_010_autoQC03dda.d.zip NA p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p34997/Proteomics/TIMSTOF_1/analytic_20240507/zip/20240507_012_autoQC03dda.d.zip p34997/Proteomics/TIMSTOF_1/analytic_20240507/zip/20240507_012_autoQC03dda.d.zip input timeRange: 7776000 | timeMin: 2024-02-14 20:33:40.30778 | timeMax: 2024-05-14 20:33:37.254 | timeDiff: 7775996.94621992 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 828 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-14 22:34:07.429245 | timeMax: 2024-05-14 20:33:37.254 | timeDiff: 7772369.82475519 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 828 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-02-14 21:34:07.429 | timeMax: 2024-05-14 20:33:37.254 | timeDiff: 7772369.82500005 NA NA nrow dataFiltered(): 52 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nrow dataFiltered(): 52 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). plotClick: fn has changed to /srv/www/htdocs//p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_010_autoQC03dda.d.zip p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_010_autoQC03dda.d.zip plotClick: plotClick: fn has changed to /srv/www/htdocs//p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_010_autoQC03dda.d.zip p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_010_autoQC03dda.d.zip p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip plotClick: fn has changed to /srv/www/htdocs//p35096/Proteomics/TIMSTOF_1/analytic_20240510_/zip/20240510_001_autoQC03dda.d.zip nrow dataFiltered(): 52 using 'ggh4x' package ... Warning: Removed 4 rows containing missing values (`geom_point()`). Warning: Removed 4 rows containing missing values (`geom_line()`). nrow dataFiltered(): 52 using 'ggh4x' package ... p35148/Proteomics/TIMSTOF_1/analytic_20240507_/zip/20240507_024_autoQC03dia.d.zip plotClick: fn has changed to /srv/www/htdocs//p35148/Proteomics/TIMSTOF_1/analytic_20240507_/zip/20240507_024_autoQC03dia.d.zip NA nFacets: 1 nrow dataFiltered(): 455 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 774 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw NA nrow dataFiltered(): 455 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 442 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 342 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... nrow dataFiltered(): 442 using 'ggh4x' package ... p3000/Proteomics/QEXACTIVE_1/analytic_20240507/20240507_C3000_006_autoQC01.raw NA p35039/Proteomics/QEXACTIVE_1/analytic_20240513/20240513_C35039_001_autoQC01.raw Execution halted