Listening on http://127.0.0.1:36547

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-03-23 15:11:26.951929 | timeMax: 2024-05-22 16:11:26.952511 | timeDiff: 5184000.00058174
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1488
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-03-23 14:11:26.952 | timeMax: 2024-05-22 14:11:26.953 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 1488
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 864
using 'ggh4x' package ...
Warning: Removed 3 rows containing missing values (`geom_point()`).
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 572
using 'ggh4x' package ...
p3000/Proteomics/LUMOS_1/pgehrig_20240417_HUNTER/20240417_027_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_1/pgehrig_20240417_HUNTER/20240417_027_autoQC03dda.raw
NA
p3000/Proteomics/LUMOS_1/pgehrig_20240417_HUNTER/20240417_027_autoQC03dda.raw
NA
NA
p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw
NA
p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw
NA
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_015_autoQC03dia.raw
NA
p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw
p35114/Proteomics/LUMOS_1/analytic_20240508/20240508_C35114_005_autoQC03dia.raw
plotClick: 
fn has changed to /srv/www/htdocs//p35114/Proteomics/LUMOS_1/analytic_20240508/20240508_C35114_005_autoQC03dia.raw
NA
p35114/Proteomics/LUMOS_1/analytic_20240508/20240508_C35114_005_autoQC03dia.raw
p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw
NA
p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw
NA
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 144
using 'ggh4x' package ...
p35114/Proteomics/LUMOS_1/analytic_20240508/20240508_C35114_005_autoQC03dia.raw
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 144
using 'ggh4x' package ...
NA
p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw
p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw
NA
p35113/Proteomics/LUMOS_1/analytic_20240508/20240508_C35113_032_autoQC03dia.raw
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
autoQC01 module APEX wide nrow: 268983
autoQC01 module APEX long nrow: 648
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
autoQC01 module APEX long nrow: 1116
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 10 rows containing missing values (`geom_point()`).
nFacets: 1
nrow dataFiltered(): 273
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 486
using 'ggh4x' package ...
nrow dataFiltered(): 486
using 'ggh4x' package ...
plotClick: 
fn has changed to /srv/www/htdocs//NA


Execution halted