Listening on http://127.0.0.1:43531

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-03-25 10:45:15.586885 | timeMax: 2024-05-24 11:45:15.587479 | timeDiff: 5184000.0005939
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 912
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 2 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-03-25 09:45:15.587 | timeMax: 2024-05-24 09:45:15.587 | timeDiff: 5184000
nFacets: 4
nrow dataFiltered(): 912
using 'ggh4x' package ...
Warning: Removed 2 rows containing missing values (`geom_point()`).
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-03-25 12:45:34.368966 | timeMax: 2024-05-24 13:45:34.369534 | timeDiff: 5184000.00056791
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 944
using 'ggh4x' package ...
Warning: Removed 2 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-03-25 11:45:34.369 | timeMax: 2024-05-24 11:45:34.37 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 944
using 'ggh4x' package ...
Warning: Removed 2 rows containing missing values (`geom_point()`).
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 832
using 'ggh4x' package ...
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-03-25 13:05:37.398952 | timeMax: 2024-05-24 14:05:37.399517 | timeDiff: 5184000.00056529
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 944
using 'ggh4x' package ...
Warning: Removed 2 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-03-25 12:05:37.399 | timeMax: 2024-05-24 12:05:37.4 | timeDiff: 5184000.00100017
nFacets: 4
nrow dataFiltered(): 944
using 'ggh4x' package ...
Warning: Removed 2 rows containing missing values (`geom_point()`).
fn has changed to NA
fn has changed to NA
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nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-03-25 13:16:09.913435 | timeMax: 2024-05-24 14:16:09.913996 | timeDiff: 5184000.00056124
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1472
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-03-25 12:16:09.913 | timeMax: 2024-05-24 12:16:09.914 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1472
using 'ggh4x' package ...
Warning: Removed 4 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1472
using 'ggh4x' package ...
Warning: Removed 80 rows containing missing values (`geom_point()`).
Warning: Removed 14 rows containing missing values (`geom_line()`).
nrow dataFiltered(): 1472
using 'ggh4x' package ...
Warning: Removed 160 rows containing missing values (`geom_point()`).
Warning: Removed 14 rows containing missing values (`geom_line()`).
NA
p34808/Proteomics/QEXACTIVE_1/analytic_20240523/20240523_C34808_001_autoQC01.raw
p35065/Proteomics/QEXACTIVE_1/analytic_20240522/20240522_C35065_001_autoQC01.raw
p34808/Proteomics/QEXACTIVE_1/analytic_20240523/20240523_C34808_001_autoQC01.raw
p35065/Proteomics/QEXACTIVE_1/analytic_20240522/20240522_C35065_004_autoQC01.raw
NA
p34808/Proteomics/QEXACTIVE_1/analytic_20240523/20240523_C34808_001_autoQC01.raw
p34851/Proteomics/QEXACTIVE_1/analytic_20240409/20240409_C34851_001_autoQC01.raw
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 325
using 'ggh4x' package ...
p35065/Proteomics/QEXACTIVE_1/analytic_20240522/20240522_C35065_005_autoQC03dda.raw
p35195/Proteomics/QEXACTIVE_1/analytic_20240515/20240515_C35195_007_autoQC03dda.raw
NA
p3000/Proteomics/QEXACTIVE_1/analytic_20240515/20240515_C3000_003_autoQC03dda.raw
p35238/Proteomics/QEXACTIVE_1/analytic_20240521/20240521_C35238_005_autoQC03dda.raw
NA
p34808/Proteomics/QEXACTIVE_1/analytic_20240523/20240523_C34808_001_autoQC01.raw
p3000/Proteomics/QEXACTIVE_1/analytic_20240521/20240521_C3000_002_autoQC01.raw
p35238/Proteomics/QEXACTIVE_1/analytic_20240521/20240521_C35238_001_autoQC01.raw
p35238/Proteomics/QEXACTIVE_1/analytic_20240521/20240521_C35238_004_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//NA
p35238/Proteomics/QEXACTIVE_1/analytic_20240521/20240521_C35238_001_autoQC01.raw
p35238/Proteomics/QEXACTIVE_1/analytic_20240521/20240521_C35238_004_autoQC01.raw
p35238/Proteomics/QEXACTIVE_1/analytic_20240521/20240521_C35238_001_autoQC01.raw
p35238/Proteomics/QEXACTIVE_1/analytic_20240521/20240521_C35238_004_autoQC01.raw
NA
p35065/Proteomics/QEXACTIVE_1/analytic_20240522/20240522_C35065_004_autoQC01.raw
p35065/Proteomics/QEXACTIVE_1/analytic_20240522/20240522_C35065_004_autoQC01.raw
NA
nrow dataFiltered(): 325
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 52
using 'ggh4x' package ...
nFacets: 1
nrow dataFiltered(): 414
using 'ggh4x' package ...
nrow dataFiltered(): 52
using 'ggh4x' package ...
p35267/Proteomics/TIMSTOF_1/analytic_20240523_/zip/20240523_001_autoQC03dda.d.zip
NA
nrow dataFiltered(): 52
using 'ggh4x' package ...
p35267/Proteomics/TIMSTOF_1/analytic_20240523_/zip/20240523_001_autoQC03dda.d.zip
NA
p34808/Proteomics/TIMSTOF_1/analytic_20240523/zip/20240523_001_autoQC03dia.d.zip
p35074/Proteomics/FUSION_2/fabiac_20240503/20240503_001_autoQC01.raw
p35074/Proteomics/FUSION_2/fabiac_20240503/20240503_006_autoQC01.raw
NA
nFacets: 4
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 144
using 'ggh4x' package ...
nrow dataFiltered(): 832
using 'ggh4x' package ...
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
autoQC01 module APEX wide nrow: 269148
autoQC01 module APEX long nrow: 708
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 2 rows containing missing values (`geom_point()`).
NA


Execution halted