Listening on http://127.0.0.1:44903 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-29 11:46:28.401607 | timeMax: 2024-05-28 12:46:28.402186 | timeDiff: 5184000.00057912 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-29 10:46:28.402 | timeMax: 2024-05-28 10:46:28.402 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) autoQC01 module APEX wide nrow: 269654 autoQC01 module APEX long nrow: 1104 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 8 rows containing missing values (`geom_point()`). Warning: Removed 1 row containing missing values (`geom_line()`). autoQC01 module APEX long nrow: 732 LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK APEXAUC.lg2 Warning: Removed 2 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 936 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 162 using 'ggh4x' package ... NA Execution halted