Listening on http://127.0.0.1:36727

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-03-29 14:59:20.055484 | timeMax: 2024-05-28 15:59:20.056078 | timeDiff: 5184000.00059366
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 1456
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 3 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-03-29 13:59:20.055 | timeMax: 2024-05-28 13:59:20.056 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1456
using 'ggh4x' package ...
Warning: Removed 3 rows containing missing values (`geom_point()`).
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 4
nrow dataFiltered(): 1264
using 'ggh4x' package ...
Warning: Removed 2 rows containing missing values (`geom_point()`).
input timeRange: 7776000 | timeMin: 2024-03-29 13:59:20.055 | timeMax: 2024-05-03 13:59:21.943 | timeDiff: 3024001.88800001
nFacets: 4
nrow dataFiltered(): 672
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
p34944/Proteomics/LUMOS_2/analytic_20240423/20240423_C34944_008_autoQC01.raw
NA
p34958/Proteomics/LUMOS_2/analytic_20240424/20240424_C34958_001_autoQC01.raw
nFacets: 4
nrow dataFiltered(): 432
using 'ggh4x' package ...
Warning: Removed 1 rows containing missing values (`geom_point()`).
NA
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw
p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw
p3000/Proteomics/LUMOS_1/roschi_20240427_autoQC/20240427_005_autoQC01.raw
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_014_autoQC01.raw
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw
NA
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw
NA
p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw
plotClick: 
vals$rawrr: TRUE
Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw
p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw
NA
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw
Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw
NA
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw
NA
p34809/Proteomics/LUMOS_1/roschi_20240404_mouse_mod_DIA/20240404_005a_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p34809/Proteomics/LUMOS_1/roschi_20240404_mouse_mod_DIA/20240404_005a_autoQC01.raw
Reading raw file: /srv/www/htdocs//p34809/Proteomics/LUMOS_1/roschi_20240404_mouse_mod_DIA/20240404_005a_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
vals$rawrr: FALSE
vals$rawrr: TRUE
vals$rawrr: FALSE
vals$rawrr: TRUE
vals$rawrr: FALSE
vals$rawrr: TRUE
vals$rawrr: FALSE
vals$rawrr: TRUE
vals$rawrr: TRUE
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw
Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
vals$rawrr: FALSE
vals$rawrr: TRUE
p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240425_005_autoQC01.raw
NA
p3000/Proteomics/LUMOS_1/pgehrig_20240429_2PCA/20240429_034_autoQC01.raw
p3000/Proteomics/LUMOS_1/pgehrig_20240429_2PCA/20240429_028_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240429_2PCA/20240429_028_autoQC01.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_1/pgehrig_20240429_2PCA/20240429_028_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
NA
plotClick: 
fn has changed to /srv/www/htdocs//NA
Warning in renderUI() : raw file /srv/www/htdocs//NA does not exist.
Read 22032 items
Warning: Error in hist.default: 'x' must be numeric
  171: stop
  170: hist.default
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$__autoQC01__-rawrr-autoQC03-plotTools
    1: runApp
p3000/Proteomics/LUMOS_1/pgehrig_20240429_2PCA/20240429_028_autoQC01.raw
NA
p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw
plotClick: 
fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw
Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw
Plotting chromatograms ...
Read 22032 items
vals$rawrr: FALSE
vals$rawrr: TRUE
NA


Execution halted