Listening on http://127.0.0.1:41737 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-30 11:10:29.942824 | timeMax: 2024-05-29 12:10:29.943408 | timeDiff: 5184000.00058484 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 324 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 104 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-30 10:10:29.94282 | timeMax: 2024-05-29 10:10:29.94341 | timeDiff: 5184000.00058985 nFacets: 1 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-03-30 10:10:29.943 | timeMax: 2024-05-29 10:10:29.943 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 324 using 'ggh4x' package ... NA NA plotClick: fn has changed to /srv/www/htdocs//p35157/Proteomics/TIMSTOF_1/analytic_20240527/zip/20240527_024_autoQC03dda.d.zip p35157/Proteomics/TIMSTOF_1/analytic_20240527/zip/20240527_024_autoQC03dda.d.zip fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-30 15:51:58.971639 | timeMax: 2024-05-29 16:51:58.972201 | timeDiff: 5184000.00056195 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-30 14:51:58.972 | timeMax: 2024-05-29 14:51:58.972 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 884 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-22 16:54:00.124368 | timeMax: 2024-05-29 16:54:00.124411 | timeDiff: 604800.000042915 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-30 16:45:39.919744 | timeMax: 2024-05-29 17:45:39.920305 | timeDiff: 5184000.00056171 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-30 15:45:39.92 | timeMax: 2024-05-29 15:45:39.92 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw NA p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw NA reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 4 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 572 using 'ggh4x' package ... p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-30 16:49:37.283633 | timeMax: 2024-05-29 17:49:37.284204 | timeDiff: 5184000.00057077 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-30 15:49:37.284 | timeMax: 2024-05-29 15:49:37.284 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1456 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_101_autoQC01.raw NA p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_101_autoQC01.raw NA p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_101_autoQC01.raw nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw NA p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-30 16:58:19.28109 | timeMax: 2024-05-29 17:58:19.281675 | timeDiff: 5184000.0005846 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-30 15:58:19.281 | timeMax: 2024-05-29 15:58:19.282 | timeDiff: 5184000.00100017 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-30 17:05:15.068376 | timeMax: 2024-05-29 18:05:15.068942 | timeDiff: 5184000.00056553 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-30 16:05:15.068 | timeMax: 2024-05-29 16:05:15.069 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 928 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw NA p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw NA p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-23 08:26:28.963485 | timeMax: 2024-05-30 08:26:28.96353 | timeDiff: 604800.000044107 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-31 09:12:26.366972 | timeMax: 2024-05-30 09:12:26.367543 | timeDiff: 5184000.00057173 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-31 07:12:26.367 | timeMax: 2024-05-30 07:12:26.368 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-31 09:12:36.777884 | timeMax: 2024-05-30 09:12:36.778445 | timeDiff: 5184000.000561 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-03-31 07:12:36.778 | timeMax: 2024-05-30 07:12:36.778 | timeDiff: 5184000 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 432 using 'ggh4x' package ... nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-03-31 09:15:47.414546 | timeMax: 2024-05-30 09:15:47.415118 | timeDiff: 5184000.00057149 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-03-31 07:15:47.415 | timeMax: 2024-05-30 07:15:47.415 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1472 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... Warning: Removed 1 rows containing missing values (`geom_point()`). NA p35189/Proteomics/LUMOS_1/analytic_20240529/20240529_C35189_001_autoQC01.raw NA p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw NA p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw NA p35189/Proteomics/LUMOS_1/analytic_20240529/20240529_C35189_001_autoQC01.raw p35189/Proteomics/LUMOS_1/analytic_20240529/20240529_C35189_001_autoQC01.raw NA p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw p35189/Proteomics/LUMOS_1/analytic_20240529/20240529_C35189_001_autoQC01.raw Execution halted