Listening on http://127.0.0.1:35485

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawDiag
Loading required package: rawrr
Loading required package: ggnewscale
fn has changed to NA
fn has changed to NA
fn has changed to NA
fn has changed to NA
nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
input timeRange: 7776000 | timeMin: 2024-04-01 15:43:18.884248 | timeMax: 2024-05-31 15:43:18.885301 | timeDiff: 5184000.00105286
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

nFacets: 4
Warning: Error in if: argument is of length zero
  97: renderUI
  96: func
  83: renderFunc
  82: output$__autoQC01__-ui
   1: runApp
nFacets: 4
vals$rawrr: FALSE
vals$rawDiag: FALSE
input timeRange: 7776000 | timeMin: 2024-04-01 13:43:18.884 | timeMax: 2024-05-31 13:43:18.885 | timeDiff: 5184000.00099993
nFacets: 4
nrow dataFiltered(): 1488
Loading required package: ggh4x
Loading required package: ggplot2
using 'ggh4x' package ...
Warning: Removed 3 rows containing missing values (`geom_point()`).
nFacets: 4
nrow dataFiltered(): 1536
using 'ggh4x' package ...
Warning: Removed 85 rows containing missing values (`geom_point()`).
Warning: Removed 30 rows containing missing values (`geom_line()`).
NA
nrow dataFiltered(): 1536
using 'ggh4x' package ...
Warning: Removed 170 rows containing missing values (`geom_point()`).
Warning: Removed 30 rows containing missing values (`geom_line()`).
p35376/Proteomics/QEXACTIVE_1/analytic_20240531/20240531_C35376_004_autoQC01.raw
nFacets: 1
reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
nFacets: 1
vals$rawrr: FALSE
vals$rawDiag: FALSE
vals$rawrr: FALSE
vals$rawDiag: FALSE
nrow dataFiltered(): 0
nrow dataFiltered(): 299
using 'ggh4x' package ...
p35326/Proteomics/QEXACTIVE_1/analytic_20240529/20240529_C35326_011_autoQC03dda.raw
NA
nFacets: 3
nrow dataFiltered(): 377
using 'ggh4x' package ...
`geom_line()`: Each group consists of only one observation.
ℹ Do you need to adjust the group aesthetic?
nFacets: 1
nrow dataFiltered(): 270
using 'ggh4x' package ...
NA
p3000/Proteomics/LUMOS_2/analytics_20240527/20240527_002_autoQC03dda.raw
p3000/Proteomics/LUMOS_2/analytics_20240527/20240527_002_autoQC03dda.raw
NA
Warning: One or more parsing issues, call `problems()` on your data frame for
details, e.g.:
  dat <- vroom(...)
  problems(dat)
autoQC01 module APEX wide nrow: 269995
autoQC01 module APEX long nrow: 1008
LGGNEQVTR, TPVISGGPYEYR, LFLQFGAQGSPFLK
APEXAUC.lg2
Warning: Removed 2 rows containing missing values (`geom_point()`).
NA
p35289/Proteomics/LUMOS_2/analytic_20240527/20240527_C35289_046_autoQC01.raw
p35289/Proteomics/LUMOS_2/analytic_20240527/20240527_C35289_046_autoQC01.raw


Execution halted