Listening on http://127.0.0.1:43159 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 09:56:22.042958 | timeMax: 2024-06-03 09:56:22.044041 | timeDiff: 5184000.00108218 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-04 07:56:22.043 | timeMax: 2024-06-03 07:56:22.044 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE p35243/Proteomics/EXPLORIS_2/analytic_20240531/20240531_C35243_001_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 11:06:34.686284 | timeMax: 2024-06-03 11:06:34.686863 | timeDiff: 5184000.00057912 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-04 09:06:34.686 | timeMax: 2024-06-03 09:06:34.687 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 944 using 'ggh4x' package ... nFacets: 4 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 162 using 'ggh4x' package ... nrow dataFiltered(): 624 using 'ggh4x' package ... NA p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_005_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240530_autoQC/20240530_002_autoQC03dda.raw p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw NA p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_006_autoQC03dia.raw p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240516_13_autoQC03dia.raw p35135/Proteomics/LUMOS_1/analytic_20240530/20240530_C35135_006_autoQC03dda.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 14:05:38.519841 | timeMax: 2024-06-03 14:05:38.520424 | timeDiff: 5184000.00058365 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-04 12:05:38.52 | timeMax: 2024-06-03 12:05:38.52 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 1440 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_006_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_003_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 1: runApp input timeRange: 1209600 | timeMin: 2024-05-27 14:23:22.815677 | timeMax: 2024-06-03 14:23:22.815728 | timeDiff: 604800.000050783 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 14:48:03.661316 | timeMax: 2024-06-03 14:48:03.661884 | timeDiff: 5184000.00056815 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). input timeRange: 7776000 | timeMin: 2024-04-04 12:48:03.661 | timeMax: 2024-06-03 12:48:03.662 | timeDiff: 5184000.00099993 nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). NA p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_002_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_002_autoQC01.raw NA vals$rawrr: TRUE vals$rawrr: FALSE p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_035_autoQC01.raw p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_002_autoQC01.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_002_autoQC01.raw NA nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 221 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_006_autoQC03dda.raw NA NA p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_003_autoQC03dia.raw NA nrow dataFiltered(): 414 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_006_autoQC03dda.raw NA p3000/Proteomics/EXPLORIS_2/analytic_20240513/20240513_004_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_006_autoQC03dda.raw p3000/Proteomics/EXPLORIS_2/analytic_20240603/20240603_002_autoQC01.raw nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 2 rows containing missing values (`geom_point()`). NA nFacets: 4 nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values (`geom_point()`). nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_002_autoQC01.raw NA p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_090_autoQC01.raw NA p35171/Proteomics/EXPLORIS_2/analytic_20240522/20240522_C35171_090_autoQC01.raw nFacets: 4 nrow dataFiltered(): 960 using 'ggh4x' package ... NA p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_16_autoQC01.raw p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_005_autoQC01.raw NA p35189/Proteomics/LUMOS_1/analytic_20240530/20240530_C35189_005_autoQC01.raw p35189/Proteomics/LUMOS_1/analytic_20240529/20240529_C35189_001_autoQC01.raw p35272/Proteomics/LUMOS_1/analytic_20240528/20240528_C35272_001_autoQC01.raw NA p35261/Proteomics/LUMOS_1/analytic_20240522/20240522_C35261_001_autoQC01.raw p35261/Proteomics/LUMOS_1/analytic_20240522/20240522_C35261_001a_autoQC01.raw NA nFacets: 4 nrow dataFiltered(): 624 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 144 using 'ggh4x' package ... nrow dataFiltered(): 144 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 221 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_2/analytic_20240521/20240521_006_autoQC03dda.raw nFacets: 4 nrow dataFiltered(): 1424 using 'ggh4x' package ... Warning: Removed 3 rows containing missing values (`geom_point()`). fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 16:28:44.850775 | timeMax: 2024-06-03 16:28:44.851349 | timeDiff: 5184000.00057411 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 414 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-04 14:28:44.85078 | timeMax: 2024-06-03 14:28:44.85135 | timeDiff: 5184000.00057006 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-04 14:28:44.851 | timeMax: 2024-06-03 14:28:44.851 | timeDiff: 5184000 nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 414 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_005_autoQC03dia.raw fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 16:34:31.281955 | timeMax: 2024-06-03 16:34:31.282686 | timeDiff: 5184000.00073099 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 216 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-04 14:34:31.28195 | timeMax: 2024-06-03 14:34:31.28269 | timeDiff: 5184000.00074005 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-04 14:34:31.282 | timeMax: 2024-06-03 14:34:31.283 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 325 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 216 using 'ggh4x' package ... NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 16:37:14.967327 | timeMax: 2024-06-03 16:37:14.968097 | timeDiff: 5184000.00077009 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-04 16:39:44.75227 | timeMax: 2024-06-03 16:39:44.754173 | timeDiff: 5184000.00190234 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 input timeRange: 7776000 | timeMin: 2024-04-04 14:39:44.752 | timeMax: 2024-06-03 14:39:44.754 | timeDiff: 5184000.00199986 nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 1568 using 'ggh4x' package ... Warning: Removed 15 rows containing missing values (`geom_point()`). nFacets: 1 reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 325 using 'ggh4x' package ... NA NA p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_005_autoQC03dia.raw nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... NA p3000/Proteomics/EXPLORIS_1/antdit_20240527/20240527_005_autoQC03dia.raw NA p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_005_autoQC03dia.raw NA nrow dataFiltered(): 325 using 'ggh4x' package ... nrow dataFiltered(): 234 using 'ggh4x' package ... Execution halted