Listening on http://127.0.0.1:39207 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawDiag Loading required package: rawrr Loading required package: ggnewscale fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 09:07:22.770187 | timeMax: 2024-06-04 09:07:22.770772 | timeDiff: 5184000.0005846 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 0 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DDA-ui 1: runApp reading /scratch/DIAQC/qc/dump/autoQC03-diann.txt Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.: dat <- vroom(...) problems(dat) nFacets: 1 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$autoQC03-DIA-ui 1: runApp nFacets: 1 nFacets: 1 vals$rawrr: FALSE vals$rawDiag: FALSE vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 234 Loading required package: ggh4x Loading required package: ggplot2 using 'ggh4x' package ... nrow dataFiltered(): 351 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-05 07:07:22.77019 | timeMax: 2024-06-04 07:07:22.77077 | timeDiff: 5184000.00058007 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-05 07:07:22.77 | timeMax: 2024-06-04 07:07:22.771 | timeDiff: 5184000.00099993 nFacets: 1 nrow dataFiltered(): 351 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 234 using 'ggh4x' package ... p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_004_autoQC03dda.raw p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_006_autoQC03dda_IW1.raw p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_007_autoQC03dda.raw plotClick: fn has changed to /srv/www/htdocs//NA NA input timeRange: 7776000 | timeMin: 2024-05-31 07:07:25.174 | timeMax: 2024-06-04 07:07:22.771 | timeDiff: 345597.596999884 nFacets: 1 nrow dataFiltered(): 52 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_007_autoQC03dda.raw nrow dataFiltered(): 52 using 'ggh4x' package ... NA NA p3000/Proteomics/EXPLORIS_1/antdit_20240603/20240603_005_autoQC03dia.raw nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 18 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-05-24 07:07:42.594 | timeMax: 2024-06-04 07:07:22.771 | timeDiff: 950380.176999807 nFacets: 1 nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? nFacets: 1 nrow dataFiltered(): 36 using 'ggh4x' package ... nrow dataFiltered(): 13 using 'ggh4x' package ... `geom_line()`: Each group consists of only one observation. ℹ Do you need to adjust the group aesthetic? input timeRange: 7776000 | timeMin: 2024-05-15 07:15:48.325 | timeMax: 2024-06-04 07:07:22.771 | timeDiff: 1727494.44599986 nFacets: 1 nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 09:57:03.310386 | timeMax: 2024-06-04 09:57:03.311548 | timeDiff: 5184000.00116134 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE input timeRange: 7776000 | timeMin: 2024-04-05 07:57:03.31 | timeMax: 2024-06-04 07:57:03.312 | timeDiff: 5184000.00200009 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-05 07:57:03.31 | timeMax: 2024-05-07 07:57:04.465 | timeDiff: 2764801.15499997 nFacets: 4 nrow dataFiltered(): 336 using 'ggh4x' package ... p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_014_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items p34902/Proteomics/LUMOS_1/huberjasmin_20240524/20240524_016_autoQC01.raw NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 10:00:26.878646 | timeMax: 2024-06-04 10:00:26.879261 | timeDiff: 5184000.00061584 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-05 08:00:26.879 | timeMax: 2024-06-04 08:00:26.879 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw NA p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw NA p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_014_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw p3000/Proteomics/LUMOS_1/roschi_20240425_autoQC/20240426_008_autoQC01.raw NA fn has changed to NA fn has changed to NA fn has changed to NA fn has changed to NA nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp input timeRange: 7776000 | timeMin: 2024-04-05 11:56:02.929626 | timeMax: 2024-06-04 11:56:02.930198 | timeDiff: 5184000.00057197 nFacets: 4 Warning: Error in if: argument is of length zero 97: renderUI 96: func 83: renderFunc 82: output$__autoQC01__-ui 1: runApp nFacets: 4 vals$rawrr: FALSE vals$rawDiag: FALSE nrow dataFiltered(): 976 using 'ggh4x' package ... input timeRange: 7776000 | timeMin: 2024-04-05 09:56:02.93 | timeMax: 2024-06-04 09:56:02.93 | timeDiff: 5184000 nFacets: 4 nrow dataFiltered(): 976 using 'ggh4x' package ... NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_007_autoQC01.raw NA p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw plotClick: fn has changed to /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw vals$rawrr: TRUE Reading raw file: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/mesche_20240426_OperatorTraining_M3_Yeast/20240426_001_autoQC01.raw Plotting chromatograms ... Read 22032 items nrow dataFiltered(): 90 using 'ggh4x' package ... nrow dataFiltered(): 26 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 104 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 104 using 'ggh4x' package ... NA nrow dataFiltered(): 72 using 'ggh4x' package ... nrow dataFiltered(): 104 using 'ggh4x' package ... nrow dataFiltered(): 72 using 'ggh4x' package ... nFacets: 4 nrow dataFiltered(): 364 using 'ggh4x' package ... nFacets: 1 nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 54 using 'ggh4x' package ... nrow dataFiltered(): 364 using 'ggh4x' package ... p3000/Proteomics/LUMOS_1/pgehrig_20240422_autoQC/20240517_19_autoQC03dda.raw NA Execution halted